>input_sequence_81974
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---------CTATT--AAAGAAACGTCAGA--------GAGCGGGCGTGCAAGAAGCCATCGGCCACCGGAGTTGCTGTA
GGAGTCAT---------CCCGTCTCAGTTAGAGTATGGAAAATGTGCTGGCCTTCTCGATCCTGAGCGCGTCGCCGGCGG
ACATCGCCCCCGGTG------------GGAGCTGGGCTTGGCTCTCCTG------GCAAGGGAGGAAGCTGCAGGAGGAC
GACCAGGATGGAGCAG---GGCAGCAAGGGAAGCAGGGCCATGTGCCGGCGGAGGCAGAGCTGTGGCCGGACAAGGGGAA
ATCACAGTCGCCATCGCTGCTGCAGCCACGGTTCGCGCCGGAGTTTGATGGGATCGACTGCTTTGAGACCCTCGTGTGCC
ATTATTCAGTTAATCTCAAGCCGTGGTTGTGA------------------------------------------------
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>chr7D_1_TraesCS7D01G067700
GGCCGGCTGACTGCCGCGTGTGCTAGCATCCGCAGTCGCGCTGATCCCACATGGGCACCAGCCTGCGAGGCCACCACGCG
TGCTTGCGTTCGCGGGTGCACTGATCGTGTGCGCGCGTGTCTGATGGCGGTAAGAGGAGGTTCGTGCCGGCGATGATGGG
TTTGGGGGTGTGGCAGCGCGCTGGAAAGGAGGGTGACCACGCGATTTCGATTTGTGGGAAAATGCAACTGTTTTTTAGAT
CCTTTTGGGGAAAACAGAGATGCCCCCTGTGTGGGTGGAGCAATGGTGGGCAAGGCTCTGCCCCCGCCACACCTAAATAC
CAATGCCAACTACCACACACAACTCAGTTTTTCCACATCATTTCCACTTCAAACTTTTTGAATTGCTTTGCTATTTATAA
AGCATTAACTGATTTTTCGGTCATTAAAAAGGACAAAAAAAACTCTTCGGTTCTACATCGCATGCAAACAAGTTCCGAAA
ATGATGAATCTTGGCATGTTGTCATCGTTGGACCGCTATAGAGTGTAGTAAATATTTGAGAGCATTACAGCAAAAAACTG
ACGGTTGTGTGTGATGGATGA-----------------------------------------------------------
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-----------------------TGGTTTTAAACATGAAAAAAGTTTGAAG---------------ATTGAGTTGTGTGT
GATGGACGATGGTTTTCATTTGAAACACTGATATTTGTGAAACAAGGACCGTGCGGACATGTCATGCCATGGGCACGTGG
AAACCCAATGACACGGGGCAGAGAAGGCAGCACAAGAAAAACTGACAGGAAAATAGAGCGAGGCCGCGAAACCGTGAGGC
GGTTGCAACT----TCCAACACGCCACCGCATGCGTCACGAGCTTGGCTCGCTGGTTCTCCCTTGCGGCTGCGTCCACGA
ATTTTCTGCACTCCTCCA--------GCGCAACAAACTGTCATGCCCAAA-------GCTTCCTCCATGACCATGACCAT
GCTCCGCCGTATATAAGCCAGGTCGCGTCCCCTCTTTTCATTCACC-------------AAACCGAGCAAGCAAGCAAAG
CCAATTTGTCTATT--AAAGAAACGTCAGA--------GAGCGGGCGTGCAAGAAGCCATCGGCCACCGGAGTTGCTGTA
GGAGTCAT---------CCCGTCTCAGTTAGAGTATGGAAAATGTGCTGGCCTTCTCGATCCTGAGCGCGTCGCCGGCGG
ACATCGCCCCCGGTG------------GGAGCTGGGCTTGGCTCTCCTG------GCAAGGGAGGAAGCTGCAGGAGGAC
GACCAGGATGGAGCAG---GGCAGCAAGGGAAGCAGGGCCATGTGCCGGCGGAGGCAGAGCTGTGGCCGGACAAGGGGAA
ATCACAGTCGCCATCGCTGCTGCAGCCACGGTTCGCGCCGGAGTTTGATGGGATCGACTGCTTTGAGACCCTCGTGTGCC
ATTATTCAGTTAATCTCAAGCCGTGGTTGTGACTGCTAATTCTTTCTCTTCATTTCGTGTTCATTCGTTGGTGACTTGTG
CTTCTAACTGCAGGAAGCCACAGGGTACAGAGTAAATTGTAACCAAGTTCTTTTCTTTTCTGATCTGTATAATCAAACGG
ACTTGTGTCCGTCATGTTCATACCGGAGTTGTACCCATTTGGCCGTGATTCCTTGGATAAACTTTTGCTATCTGCATAGT
TAAGGAAATTATTTTCCAGGTAGTTAAGATTTGATGTGGTAAGGATATTGAGACAAACTAATCCGAAAAAAAGTGAAAGC
GTGTGAATTGCAACTCGTTAGATTTCCAAACTCCAAGTTCACACTAAACTATCTCGCTAATGCGATACATTCATAGTTGG
GGTAACATATAGTTACGGGTAAACTCAAACACTTAACATAGCATCCTTTTTCCTCTTGGAATTGTCACTCGAACCAGTTA
CAAGAAGGAAATCACAACAGCTACATGTAAGTTGAACGAATTTGCAATTTTTGCTGGTCGATTTTGTGGAAGGAAGAATG
GTTGCAGGAGGAAAAAGAAAGAAGAACATCCATTGGATCTTTAGTGTAATGGCCAAGAAAATCGACTCAATCAAAATAAA
TTTTCAGACGACATACATATAACCGCTCCCGAAGGAAATTGGTGCCAAGCTGTCTCGCTGAAGTAACTAAATGGAGACAG
CAAGGCATAGTTGAACGGACGACAAGTAGAGCATACATTTGCTGATAGTGGCACTAGCTTACATGGAGAAGCACAAAGAG
TGAAGGACGATTGCCCCTAAAGATACTTGGGCATGGTGTCACCACCGCAGGCCAGTTCCATACAGTTGCCGGACTCCTCG
GATTAGTAGAGACCATGGTGTTAGTTGCTGAAGTCCTCAGGCTTGTAGAGACCATGGTGTTAGCACTGGGCCAATGTATA
CATTCGGTAAATATTGCTTCTCTCCTGACGTCTCTGATTCCTACATGTTGCATCCATCTGATTCTTCTCTCA
>chr4A_372
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---------------------------------------------------AACTTTTGGAGTTGGTTTGCTATTTTTAA
AGCATTAACTGATTTTTCGGTCATTAAAAATGAGAAA--AAACTCTTCGGTTCTACATAGCATGCAAACGAGCTCCGAAA
GTGACACATCTTGGCATGTTGTCTTCATTGGACCTCTGTAGAGTGTCCTAAATATTTGAAAGCATTACGGCAAAAACTTG
ATGCACTTCGCGTACAAACCGAACATTCTCTGGTAAAATATCAGCGCTTTCAACGATACCATCGCCCACCACACACAACT
GAGTTTCTTAAACCATTTCCACTTCAAACTTTTTCCATATTTAAAACCATGCTTTCTAGCTCGGGTTTTTAACATGAAAA
ACTGCAACCATGCATTTGGGCTCTGGTTTTAAACATGAAAAAAATGAAGTGAAATGATGTAAAAAAATTGAGTTGTGTGT
GATGGACGATGGTTTTCGTTTCAAAAGCTCATATTTGTCAAACAAGGACCATGCGGACACATCATGCCATGCTCACGTGG
GAACCCACTGAAAGAG--------AGGCAGCACGAGAGAAACGA-----AAAATAGAGCGATGCCGCGAAACCGCGAGGA
GGTTGCAACT----TCCATCATGCCAACGCGTGCGTCACGAGCTC-GCTCGCTGGTTCTCCCTTGCGGCTGCATCCACAA
ATTGTCTGGACA---CCT--------GCGCAACAAACCGCCATGCCCAAA-------GCTTCCTCGAG------------
GCTCTGTCGTATATAAGCCGGGCCACGTCCC-TCTTTCCCTTCACC--------------AACCGAGCAAGCAAGCCAGG
CCAATTTATCCATTATAAAGCAAAGTCAAAGGAT--------GTGTGTGCAAGGAGGCATCGGCCACTGGAGCTGCTGCG
GTAGTCAT---------CCCATCTCCATTCGAGTATGGACAAGGTGCTGGCCTTCTCCATCCTGAGCGTGTCGCCGGCCA
ACATCGCCACTGGCG------------GGAGCTAGGATCGGTTCTCCTT------GCGGGGAAGGAAGTTGCATGAGGAC
GACCAGGTTGGAGCAG---GGCAACAGGGGAAGCAGGGCCATGTGCTGGTGAAGGCCGAGCAGCGGCCGGGCAAGGGGAA
ATCACAGTCGACGCCACCGCCGCTGCCGCAGTTCGCACCGAAGTTTGATGGGATTGACTGCTTTGAGAC-----------
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>chr7A_768
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----------------------------------------------------------------CGTGAAACAGTGAGAC
GGTTGCAACC----GCCACCACGCCACCGCGTGCGTCACCACCTC-C--------TTACCCCTCGCAGCCGCGTCCACCA
ATATTCTGGTCT---CCTCCAGCGCAGCGCAGGAAACCGCCATGCCCAAA-------GCTTCCTCCTTGCCAATTGCCA-
-CCAAGCCGTATATAAGCCGGGTCGCGTGGCCTTTCTCCCTTCACCAACCCCAGCAAGAAACA-----ACCCAAGCAAAG
CCACCA-ATTGATT--GAAGCAAAGTCACAGAGC--------CTGCGTGCAAGAAAGCGTCGGCCACCTGAGCTGCTGCC
GGAATCAT--------CCCCGTCTCCTATCGAGTATGGACAAGGTGCTGGCCTTCTCCATCCTGAGTGCATCGCCGGCCG
ACATCGCCCTCGGCACCGGCGCCAGCGGCAGCTGGGCTCGGCTGTCCTG------GCGGGGAAGGAAGCTGCAGGTGGAC
GACCGGGCTGGAGCAG---AGCACCAAGGGAAGCAGGGCGGTCTGCCGCGGGAGGCAGAGCAGCGGCACGACAAAGGGAA
ATCGCAGTCGCCGTCGACGTTGCCGCCACGGTTTGCGCCCGAGTTTGATGGGATCGACTGCTTTGAGACCATCGTGTGCC
ATT-----------------------------------------------------------------------------
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>chr3D_769
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-----------------------------------------------------------------GCGAAACCGCGAGAC
GGTTGCAACCAACCTCCACCACGCCACCTCGTGCGTCACGAGCTC-GCTCGCTGTTTCTTCCCCGCGGCCGCGTCCACGA
ATATTCTGGGCT---TCTCCAGCGCTT-----GAAACCGCCATGCCCAAA-------ACTTAAACTTCCTCCATGACCAT
GCTCCGCCGTATATAAGCCGGGTCGCGTCCCCGCTCTCCCTTCACC-------------AAC-----CAAGCAAGCAAAA
CCAATTGATTGACT--GAAGCAAAGTCACAGAGCGAGCGAGCGAGCGTGCAAGAAAGCATCGGCCACCGGAGCTGCTGCA
GGAAGCCAGGAATCACCCCCGTCTCCAGTCGAGCATGGACAAGGTGCTGGCCTTCTCCATCCTGAGCGCGTCGCCGGCCG
ACGTCGTCCCCGGCGC---------------------TCGGTTCTCCTGGCAGCGGCAGGGGAGGAAGCTGCGGGACGAC
GGCCAGGCTAGAGCAG---GGCAAGACGGGAAGCAGGGCGGTCTGCCGGCGGAGGCGGAGCAGCAGCCGGACAAGGGGAA
ATCGC---------CGATGTTGCGGCCGCGGTTCGCGCCGGAGTTCGACGGGATCGACTGCTTCGGGACCATCGTGTGCC
A-------------------------------------------------------------------------------
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>chr4A_804
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------------------------CACCGCGTGCGTCATGAGCTC-CCTCGCTCCTTCCCCCTCGCTGCCGCGTCCATCA
ATATTCTGGTCT---CCTCCAGCGC-----AGGAAACCGCCATGCCTAAA-------GCTTCCTCCA-------TGCCA-
-CTAAGCCGTATATAAACCGGGTGGCGTGGCCTTTCTCCCTTCACCAACCCCAGCAAGAAAC-----GACCCAAGCAAAG
CCACCA-ATTGATT--GAAGCAAAGTCACAGAGC--------CTGCGTGCAAGAAAGCCTCGGCCACCGGAGCTGCTGCA
GGAATTAT--------CCCCGTCTCCTATCGAGTATGGACAAGGTGCTGGCCTTCTCCATCCTGAGCGCGTCGCCGGCAG
ACATCGCCCCCGGCGCC------GGCGGAAGCTGGGCTCGGCTGTCTTG------GTGGGGGAGGAAGCTGCAGGAGGAC
GACCGGACTGGATCAG---AGCACCAAGGGAAGCAGGGCGGTCTGCCGCGGGAGGCAGAGCAGCGGCCGGACAAAGGGAA
ATCGCAGTCACCGTCGACGTTGCCGCCACGGTTTGCGCCGGAGTTTGATGGGATCGACTGCTTCGAGACCATCGTGTGCC
ATT-----------------------------------------------------------------------------
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>chr7D_835
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-------------------------------------------------------TTCTCCCTCGCGGCCGCGTCCACCA
ATATTCTCGACT---GCTCCAGCGC-----AACAAACTGCCCAGGCCGGGGGGTCTTGCTTCCTCGAG------------
GCTTCGCCGTATATAAGCCGGGTCGCGTCCCCTCTCTCCCTTCACCAACCCGAGCAAGG--C-----CAAGCAAGCAAAA
CCAATTGATTGATT--GAAGAAAAGTCCGG--------GCGCGTGCGTGCAGGAAAGCATCGGCCACTTGAGCTGCTGCA
GGACG----------------------ATCGACTATGGACAAGGTGCTGTCCTTCTCCATCCTGAGCGCGTCGCCGGCAG
ACATCGCCCCCGGCGCCAGCAACGGCGGCAGCTGGGCTCGGCTCTCCTG------GCGGGGAAGGAAGCTGCAGGAGGAC
GACCGGGCTGGAGCAGCAGGGAAACAGGGGAAGTAGGGCGTTCTGCCGGCGGATGCAGAGCAGCAGCCATGCAAAGGGAA
ATCGCAGTCACCGC---------TGCCGCGGTTCGCGCCGGAGTTTGATGGGATCGACTGCTTCGAGACCATAGTGTGGC
ATTGATCGGTGAATCACGAGC-----------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S--S---S----------S---
------------------------------S--S---SS-------------------S----------S--S-------
S---SSS----------------S--S-------S--S--------SS-----------S--------S-------SS--
-S-SSSS-SSSSS-SSS-SSS-----------------------------------------------------------
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-------------------------------------------S-SSSSS------------------------------
-----------------S---S---SS--S--------S-----------S--------SS----------SS-------
S------S---S-SS-SSSSSSSS---------S---S----SSSSSSS------------S------------------
------------------S-----------S-------------SS----------------------------------
--------S---SSS--S---------------------S-----------------------------S----------
-------------------S-----------------S-S----------------------------------------
-------S--S------------S-------------------S------------S---------------S-----S-
-------------------------SS--S---------S--S--------------S--------------------S-
-------------S------------------------S-------------------S---------------------
-------S---------------S-------------------------------------S-S----------------
------------S----------S----------------------------------------------S---------
---SS--S--S----S-S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_271
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-----------AAACAGAGATGCCCCCTGTG-------------------------------------------------
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>reverse_2447
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----------------------------------------------GCAGGCCAGTTCCATACAGT--------------
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