>input_sequence_81969
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ATGGCCATGGGGACTAGGCGCGCTGCTCTCTGCTTTCTTCTGCTAGTCTCCATCTTCTTACAAGGCAACCCTACATTGGT
TTCAGCGGACGGTTCGTT-------TCTCCCCCTCTGCGCCATTCTTGAGCTGGTTTTAAATTGGAATTTAATGTGATGA
GAAAGATTATACTG------CAAGTTACTTACTGAT---CTAGTACGTATCATCTGTGAACTTCAGAGGAGTGCAAGTAT
AGGATTCCGTATGTACCCTTCTGCAAGGGGTGGAGCTGCAAGGTGGAGTGCTGGCTGGAGGCCAAGCTCTTCCGCGCCCG
TCT-----------------------------------------------------------------------------
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-----------ACAGGAGCACAA---------------GTGCATCAGGGGCGGCATCAAGGGCGCCTGCTACTGCCTCTT
CT------------------------GCGGGAAGCACCTCCAATGA----------------------------------
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>chr4B_1_TraesCS4B01G144400
ACGCCGCCCGCGCTCAGCCTCCACGCCTCCGGCACGCGCATGTCAGGGGGCGCCGGGTACTCGGCCTCGTAGAGGAGGCG
CGCCTCCGGCTCTTGGCCATCTTTGCTTCGCTCGCCGTGCCACCATCGCCTGATGGCCTCCGCCCGCCGTGCCACCATCG
TCTGGGAACCTCTCGGCCATCTTTGCTTCGCTCGTTGGCGGGAAGGGGGGGGGGATGGCTTTCGCGAGATGGGGAGGGTG
TGGCGTTCACCGGCGGGGAGTGGGTGCATTTAATAGCCCAAGTGGGGCGGCCGGGAGGCAGCATGTCGGGCGATGCG---
TGGCGGGAGCGGGCAG--------------------GAGGCATCAATGGAGGCTGACCGGCGCGGCAGCGCGACAACCTT
GGCTTTGATTACCGCGGGAACCGAGGCGATAAGGGCGACGAAGCGGCGTCTCGCTGACTAGGCCCCCCATTCGCGTCAAA
ACCGCTCGCCCCGGCGCCCCCCAGCGCGCCGGGTTCGGCCTGGGTCCACCGGCACTAACTTCGACCCAAACCGACGAAAA
ACGGACTCTTGGGGGCGTGACTGGACCGTTTTTTCGGCGCCAGCGCAAAAAAACCGCCTTGGGGCGCCGTGTTGGGGGCG
CGACTGGAGATGCTTTTGGTACCGCACGCGGCAGACGCCGGCCTTTCAGTACTAGTCATAGTTCTCTCTTCTCA--AAAA
AAAAAAACTAGTCGTAGTTCTCATATTTTGTTGTTAATTTGACTAGTCGTACCTTTGATCTAGC-----GATAGATTCCC
GGCCGCGATTCGATTCTTTATTCTCTTGTGATCTTCTCCCGCTCCGGCAGGTAGTTGACAGTTGAGTAGAGTAGTTGCAA
CAGGTAGTTAAAACTAGATAGATCCCTGATTCTCTCGCAGGTTGGTTGCAAGAGGAGCCACTATAAGTAGAGCCTACGTC
CTACCACATCTTCTGAGA----------AACCCAACCCAACGAGAGCTAATATCCATCCTTGCAGCTAACCGATCAGATC
ATGGCCATGGGGACTAGGCGCGCTGCTCTCTGCTTTCTTCTGCTAGTCTCCATCTTCTTACAAGGCAACCCTACATTGGT
TTCAGCGGACGGTTCGTT-------TCTCCCCCTCTGCGCCATTCTTGAGCTGGTTTTAAATTGGAATTTAATGTGATGA
GAAAGATTATACTG------CAAGTTACTTACTGAT---CTAGTACGTATCATCTGTGAACTTCAGAGGAGTGCAAGTAT
AGGATTCCGTATGTACCCTTCTGCAAGGGGTGGAGCTGCAAGGTGGAGTGCTGGCTGGAGGCCAAGCTCTTCCGCGCCCG
TCT-----------------------------------------------------------------------------
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-----------ACAGGAGCACAA---------------GTGCATCAGGGGCGGCATCAAGGGCGCCTGCTACTGCCTCTT
CT------------------------GCGGGAAGCACCTCCAATGAAACACATACATCATCCATCATTT--------GCT
CGCTCGTCCAGTAGGCATTACCACTA------------------------------------------------------
-----------------------------GTTATTTATCTCAAACATTCCTCATCCACGTTTGCTTATCCAGCTGAAGCC
AATAATTCCTTTTCTCATAAACGAATTGCGACTAGTTTATATTAAGGT-----AGCAGCAGCAGCTCTAGTACGTAGCAG
CTTCAGATGTAGTTAGTCCCAGTTTGGAGATTGAATTCTCTTTTT-----------------------------------
----------------------------------------------------------TTGTTTTTGCCTTCCTAGATAG
CTGCCACGACCATGTAATGTCTTGCTTCAATTAATGTTATTATGGATTAATAAAGTTACATGATTGTCTCTGCGTAACTG
AAATGCTCAGAACTGTTTCAGAGATGTCAGTATGTCACGTCATAAAAAAAGGTTAATGTCAATTCTTGTATA--CGTAAC
TCGATTAACCATCCTACGTGTCACTTCGTCATAAAAAATTAAGACATTTCTGGAACTCAAAAAATATCTGGGTCCTAAGG
TAACTCATGCCCTTGGAATCCAACAGAAGAAAA-CGTTTCAAAATATCTTCAGCCATAGATTCCTCCCTTCATACTTCAG
AGCTTATTTTTAGCTCATCATGTCTTTGGAGATCGACCGTGCTACTTA--------------------------------
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----------------------------------------------------GTTACTGCTTGCTACTAGTATTCAGTTG
TCCACCACATACCACATGATTTTAACATAACATAAGGAAATTTTGCGCGCACACTACCAAGAAATAAGGGGTCTATGGTC
AGTTGTACACCTCTGCCATCACAACCTTAATACCGTAGTCCGGGAGGTACAAGATAG--CTGTAGCGACGGAGATCATGC
TGCGAGGTCACTCTCGGATTTCATCTCCTGAGCTGTTTGCCTGTTCAGTGACAAGTGAGCACAACACTTGTTCGAATGTG
GTGTAATCAAATTCAGAGTATGCAGTTGCTAGTTTACTCAATCTACACATTAACAATGCCACGCTAGTTTAGTTTTATCT
ATGTCCAGATCATTAATGTTAGCTACATGTACAAAATAAGCTCA
>chr7B_1
ACGCCGACCGCGCTCAGCCTCCACGCCCCCGGCACGCGCATGTCAGGAGGCGTCGGGTACTCGGCCTCGTAGAGGAGGCG
CGCCTCCGGCTCTTGGAGGTGTCGGCGGCCGAAG-------------------------CCGTCCGCCGCTGCGCCATCG
CCTGGGAACCTCTCGGCCATCTTTGCTTTGCTCGTCGGCGGGAAGG---GGGAGATGGCTTTTGCGAGAGGGGGAGGTTG
TGGCGTTCACCGGCGGGGAGTGGGCGCCTTTTATAACCCAAGTGGGGCGGCGGAGAGGCAGCATGTCGGGCGACAACACT
TGGCGGGAGCGGGCGGGACGCGCGTCGGCGGCGCCTGAGGCATCAATGGAGGCTGACCGGCGCGGCGGCGCGACAGCCTT
GGC-----------------------------------------------------------------------------
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------CAGCCTTGACATTGATTCCCGCGGGAACCGAGGCGA--------------------------------------
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--------------------------------------------TGGGGCAAC-GAAGCGGCGTCTCGCTGACTAGGCGG
ACCCGCCCCCCGTT----------------------CGCGCCCGGGCGCTTCCAGCGTGCCGGATTCGGCCTGGGTCCGC
CGGCACGAACTTCGGCCCAAACCAAC-AAAAACGGGCTTTTGTGGGCACGACTGG-CTGTTTTTTTGGCGACGGCGA---
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-------------------------AAAA-AA-TCGACTTGGAGGGCCTTGTTGGGGGCGCGG-----------------
-------------------------TTGGAGATGCT--------------------------------------------
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>chr5B_1
ACGCCGCCGGCGCTCAGCCTCCACGCCCCCGGCACGCGCATGTCAGGGGGACCCGGGTACTCGGCCTCGTAGAGGAGGCG
CGCCTCCGGCTCTTG-----------------------------------------------------------------
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-----------------------------------------------GAGGTGGCGGCAGCCGAAGCCGTTCGCCGCCGC
GCCGTCACCTAGAAACCTCTCGGCCATCTTTGCTCGTCGGCGGGAAGGGGGGAGAGGGCTGCTTTTGCGAGGCGGGTGCA
GGGGGAAGGTTGTGGCGTTCACCGGTGGGGAGCGGTAACCTTTTATAGCCCCAGCTGGGCGGCGGGGAGGCTGCATGCCG
GGCGACGCATGGCAGGAGCAGGCCGCGGCGCCTTCACTGTGCCGCCCGTGAGGCATCAATGGAGGCTGACCGGCATGGTA
GCGCGGCAGCCTTGGCATTGATTCCCGCGGGAACCGAGGCCA--------------------------------------
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--------------------------------------------TAAGGGCGATGAAGCAGCGTCTCGCTGAATAGGCAG
GCCCGCCCCCGTTCGCACCAAAATCGCTCGCCCCGGCGCCCCCGGGCGCCCCCAACGCGCCGGGTTCGGCCTGGGTCCGC
CGGCTCTAATTTCGGCCCAACCCGGCGAAAAACGGGCTCCTGTGGGCGCGAGTGGGCCGTTTTTTCGGTGCCGGCGC---
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-------------------------GAAG-AAATCGCCTGAGGGGTCCGTGATGGGGGCTCGG-----------------
-------------------------CTGGAGATGCT--------------------------------------------
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>chr4A_633
TTA-----------------------------------------------------------------------------
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------------------GTACCGCACGCGGCAGACGCCGGCCTTTTAGTACTAGTCGTAATTCTCTCCTCT-------A
AAAAAAACTAGTCGTAATTCTCATATTTTGTTTTTGATTTGACTAGTCGTACCTTTGATCTAGCAACTAGATAGATTCTT
GGCCG-----CGATTCTTTATTCTCTTGTGATCTTCTCCCGCTTCGGCAGGTAGTTGACAGTTGAGTAG-----TTGCAA
CAGGTAGTTAAAACTAGATAGATCCCTGATTCTCTCGCAGGTTGGTTGCAGGAGGAGCCACTATAAATAGAGCCTAC-TC
CTACCACATCTCCTGAGAAACCCAACCCAACCCAACCCAACGAGAGCTAATATCCATCCTTGGAGCTAACCGATCAGATC
ATGGCCATGGGGACTAGGCGCGCCGCTCTCTGCTTTCTTCTGCTAGTCGCCGTCTTCTTACAAGGCAATCCTACATTGGT
TTCAGCGGATGGTTCGTAATCTCCCTCTCTCTCTCTGCGCCATTCTTGCGCTGGTTTTAAATTGGAATTTAATGTGATGA
GAAAGATTATACTACTAC---AAGTTACTTACTGATCTACTAGTACGTATCGTCTGTGAACTTCAGAGGAGTACAAGTAT
AGGATTCCGTATGTACCCTTCTGCAAGGGGTGGAGCTGCAAGGTGGAGTGCTGGCTGGAGGCCAAGCTCTTCCGCACCCG
TCT-----------------------------------------------------------------------------
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-----------GCAGGAGCGCAA---------------GTGCATCAGGGGCGGCATCAAGGGCGCCTGCTACTGCCTCTT
CT------------------------GCGGGAAGCACCTCCAATGAAACACATACATCATCCATCCATTATTTGCTCGCT
CGCTCGTCTAGTAGGCATTACCACTACTCCCTCCGTTCCATAATATAAGAGCGTTTTTGGCACTACACTACTGTAAAAAA
CGTTCTTATATTATGGGACAGAGCGAGTAGTTATTTATCTCGAA-GTTCCTCATCCACGTTCGCTTATCCAGCTGAAGCC
AATAATTCCTTTTCTCATAAACGAATTGCGACTAGTTTATATTAAGGT-----AGCAGCAGCAGCTCTAGTACGTAGGAG
CTTCAGATGTAGTTAGTCTCAGTTTGGAGATTGAATTC---TTTCTC---------------------------------
--------------------------------------------------------CCTTTTTTTTGGCTTCCTAGATAG
CTTCTACGACCGTGTAATGTCTTGCTTCAATTAACGTTATTATGGATTAATAAAACTGTATGATGATCTTCGCGTAACTG
AAATGCTCAGAAATGTTTCAGAGATGTCAGTATGTCACGTCATAAAAAAAGGTTAATGTCAATTCTTGTATA--CGTAAC
TCAATTAACCATCCTACGTGTCACTTCATCATAAAAATCTAAGATATTTCTGGAACTCAAAAAATATCTGGGTCCTAAGG
TAACTCATGCCCTTGGAATCCAACAAAAG-AAA-CGTTTCAAAATATCTTCAGCCATAGATTCCTCCCTTCATACTTCAG
AGCTTATTTTTAGCTAATCATGTCTTCGGAGATCGACCATGCTACTTACTCCCTCCGTTTCTAAATATTTGTTTTTTTAG
AGATTTCAAATGACTGCCACATACGGATGTATATAGACATATTTTAGAGTGTAGATTCACTCATTTTGCTTCGGATGTGT
CACTTGTTGAAATTTCTAAAAAGACAAATATTTAAGAACGGAGGAAGTACTGGTTACTGCTTAC----------------
--CACCACATACAACA-GATGGTAACATAACTTAAGGAAATTTTGCACACACATTACCAAGAAATAAGGGGTCTATGGTC
AGTTGTACACCTCTGCCATCACAACCTTAATACCGTAGTCCGGGAGGTACAAGAGATATCTGTAGCGACGGAGATCATGC
TGCGAGGTCACTCTCGGATTTCATCTCCTGAGTTGTTTGCCTATTCAGTGACAAGTGAGCACAACACTTGTTCGAATGTG
GTGTAATCAAATTCAGAGTATGTAGTTGCTAGTTTACTCAATCTACACATTTACAATGCCGCGCTAGTTTAGTTTTATCT
ATGCCCAGATCATTAACGTTAGCTACATGTACAAAATAAGCTCA
>chr4D_663
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---------------------------------------------TCAGTACTAGTCGTAATTCTTCCTCTCTCTCAAAA
AAAAAAACTAGTCGTAATTATCATATTCTGTTGTTGATTTGACTAGTCGTACCTTTGATCTAGC-----GATAGATTCCC
GGCCGCGATTCGATTCTTTATTCTCTTGTGATCTTCTCCCGCTCCGGCAGGTAGTTGACAGTTGAGTAGAGTAGTTGCAA
CAGGTAGTTAAAACTAGATAGATCCCTGATTCTCTCGCAGGTTGGTTGCAAGAGGAGCCACTATAAGTAGAGCCTACGTC
CTACCACATCTCCTGAGA-----AACCCAACCCAACCCAACGAGAGCTAATATCCATCCTTGCAGCTAACCGATCAGATC
ATGGCCATGGGGACTAGGCGCGCCGCTCTCTGCTTTCTTCTGCTAGTCGCCGTCTTCTTACAAGGCAACCCTACATTGGT
TTCAGCGGACGGTTCGTAATCTCTCCCTCTCTCTCTGCGCCATTCTTGCGCTGGTTTTAAATTGGAATTTAATGTGATGA
GAAAGATTATACTACTACTCCAAGTTACTCGCTGAT---CTAGTACGTATCATCTGTGAACTTCAGAGGAGTGCAAGTAC
AGGATTCCGTACGTACCCTTCTGCAAGGGGTGGAGCTGCAAGGTGGAGTGCTGGCTGGAGGCCAAGCTCTTCCGCGCCCG
TCT-----------------------------------------------------------------------------
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-----------ACAGGAGCACAA---------------GTGCATCAGGGGCGGCATCAAGGGCGCCTGCTACTGCCTCTT
CT------------------------GCGGGAAGCACCTCCAATGAAATACATACATCATCCATCCATCATTTGCTCGCT
CGCTCGTCCAGTAGGCATTACCACTA------------------------------------------------------
-----------------------------GTTATTTATCTCAAACGTTCCTCATCCACGTTCGCTTATCCAGCCGAAGCC
AATAATTCCTTTTCTCATAAACGAATTGCGACTAGTTTATATATTAAGGTAGCAGCAGCAGCAGCTCTAGCACGTAGGAG
CTTCAGATGTAGTTAGTCTCAGTTTGGAGATTGAATTC---TTTT-----------------------------------
----------------------------------------------------------TTTTTTTTGGCTTCCTAGATAG
CTGCTACGACCGTGTAATGTCTTGCTTCAATTAATGTTATTATGGATTAATAAAATTGTATGATGATCTCTGCGTAACTG
AAATGCTCAGAAATATTTCAGAGATGTCAGTATCTGACATCATAAAAAAAGGTTAATGTCAATTCTTGTATATACGCAAC
TCAATTAACCATCCTACGTGTCACTTCATAAAAAATATTTAAGACATTTCTGGAACTCAAAAAATATCTGGGTCCTAAGG
TAACTCATGCCCTTGGAATCCAACAGAAG-AAAACGTCTCAAAATATCTTCATCCATAGATTCCTCCGTTCATATTTCAG
AGCTTATTTTTAGCTCATCGTGTCATCGGAGATCGACCATGCTACTTACTCCATCCGTTCCAAAATAGTTGTGCTAACAT
TAATACAAAGCTGAGTTATC------------------------------------------------------------
----------------------------TATTTTAAAACGGAGGGAGTACTAGTTACTGCTTACTACTAGTATTCAGTTG
TCCACCACATACAACTTGATGTTAACATAACATAAGGAAATTCTGCACACACACCACCAAGAAATAAGGGGTCTATGGTC
AGTTGTACACCTCTGCCATCACAACCTTAATACCGTAGTCCGGGAGGTACAATATAGATGTAC--CGACGGAGATCATGC
TGCGAGGTCACTCTCGGATTTCATCTCCTGAGCTGTTTGCCTGTTCAGTGACAAGTGAGCACAGCTCTTGTTCGAATGTG
GTGTAATCAAATTCAGAGTATGCAGTTGCTAGTTTACTCAATCTACACATTAACAATGCCGCGCTAGTTTAGTTTTATCT
ATGCCCAGGTCATTAACGTTAGCTGCATGTACAAAATAAGCTCA
>SNPs
---------------------------S----------------------------------------------------
----------------SSS-S-SS--SS-SSSS-SSSSSSSSSSSSSSSSSSSSSSSSS---S------SSS-S------
S---------------------------S------S----------SSS---S---------S------S-------S--
------------------------S--S---S---S---------------S-S-------------------SSSS---
--------------S---------------------------------------------------S--------S----
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS---------------------------------------S--S-----------SS------
----------------S------------------S--------------------------------------------
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-----------S--------------------------------------------------------------------
-----------------------S------------------------S--S----------------------------
-----------------S-----------S-S----------------S-------------------------------
-------------S------------------------------------------------------------------
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-----------------------------------------------------------------SS-------------
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---------------------------------------------S---------------S------------------
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--------------------------------------S-S---------------------------------------
------------------------------------------------------------S------S------------
----S------S------------------------------------------S--SS-----SS--------------
------------S-------------------------------------------------------------------
--S------------------------S---------S------------------------------------------
-----------------------------S--------------------------------------------------
--------------------------------------S-----------------------------------------
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--------------------------------------------------------------S-----------------
------------S-------S-------------------------S-S-------------------------------
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------------------------------------------------------------S-------------------
---S------------S---------------------------
>forward_658
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------------------------------------------------------------------------------CG
CGACTGGAGATGCTTTTG--------------------------------------------------------------
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>reverse_2068
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-------------------------------------------------------------------CCTTCCTAGATAG
CTGCCACG------------------------------------------------------------------------
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