>input_sequence_81959
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---------------------------------------------------------ATG----------GCGAGCATGG
AGGTTGAGGCTGCGAGGTGCGAGTGCTGCGGCTTCACGGAGGAGTGCACGCCGGAGTACATCGCGGCGGTGCGGGCCGAG
TACATGGGCCGCTGGGTCTGCGGGCTCTGCGCGGCGGCCGTGGGCGACGAGATCCGCCGCGCGGGCGCCCGGGGCCAGCG
CGCCATCACCACGGCCGAGGCGCTCGACCGGCACGGCGCGTTCGCGCGGGAGGCGCCGCGCGCGCCCGGGAAGAAGGCGT
CCGAGGAGCTCGTGGCCGCCGTCTCGCGCCTGCTCCGGCGCTGCCTCGACTCGCCGCCGGCGTCCCCCGCCGCGCCGCAG
GGGCGCAAGGTGGCCGCGGGGCCCAGGTGCACGGACGCCGAGGATGATTGA-----------------------------
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>chr7D_1_TraesCS7D01G163800
AAAACCACGAACTTGCTGAATTAGCAAGTTGATTATCACTGATTAAAGCATTTAGTGTTCATTTCCAGTACACTTGGAGC
TATTATAATACTCCCTCTATCCATATATACAACGGCTAATACGATTTTCAAGGTTATCTTTGACCACAGCTTAAAGTAAT
AATATATGACATGCGTGTTGCACAAAGCATATCATCAAATTCGTAAAAGAGATGATTTTCTAATGATATTATTTTTATAC
CACATATCTTATATATTAATTTTTTTCATCAACAATCAAATACAACCTCAAAATACGTATTAGCCCATATATATATACTG
ATGGAGGGAGTAGTTTTTTATCACAACTACTAGTTTACTTGGGGAAAAAAATGTAGCCTTATGATTGGAGGCACCAACCC
AGCCCAG-----------------------GACAAAAACACTCCTGTCGCGATAAAAACCAAGAGAGCGACGTGTCAGGC
TCATGAAAACAGCA-GGTGGGCCCCAGCAACAGCGACGGCCCATCCGAACCCGC-ACCAAATCCACCCGACCCCTGGGCA
CGGCGAGCAGCCCGCGCGGCCCACCATCGCCAGCTGTCAGTACTCACAGACCACGCATTCAAAAGGCCCGGCGCCCGTCC
AGCTCAGCCCCCCGACGTGGACCTCCATCTAGCAGCCCCA----------------------------------------
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--------------------------------------------------------------------CGCTACGGGCCA
CGGCCCGTACAGGAG-----------------------------GCGGGGCCAGCTAGGCAAGACGTGGCCACATGCTCC
ACGGCGCTGGCCGTGCATAAATACCACCTGGCTGCCACCGCATGTCCCGGCGCGGAGAAGTCCAGGGCGGGAGGGGAGGC
GAGCCGAGGCGGAGGAGAGGGAAGCGCGAGGGAGACGTCGCCTGACTGCGATGACACCGGGCGCCGACGCCGTCATCATC
GCCGTAGCAGCAGCCAGCCGGAGCGAGCAGGCCAGGA---------------GCCGGAGAGCGGCCGAGGCGCCGTCCGT
CCCGTCGTCCTACGTCGTCTGGGAGAAGGAGCGGTAACTGGTTCGATATATTGGTCGATG----------GCGAGCATGG
AGGTTGAGGCTGCGAGGTGCGAGTGCTGCGGCTTCACGGAGGAGTGCACGCCGGAGTACATCGCGGCGGTGCGGGCCGAG
TACATGGGCCGCTGGGTCTGCGGGCTCTGCGCGGCGGCCGTGGGCGACGAGATCCGCCGCGCGGGCGCCCGGGGCCAGCG
CGCCATCACCACGGCCGAGGCGCTCGACCGGCACGGCGCGTTCGCGCGGGAGGCGCCGCGCGCGCCCGGGAAGAAGGCGT
CCGAGGAGCTCGTGGCCGCCGTCTCGCGCCTGCTCCGGCGCTGCCTCGACTCGCCGCCGGCGTCCCCCGCCGCGCCGCAG
GGGCGCAAGGTGGCCGCGGGGCCCAGGTGCACGGACGCCGAGGATGATTGATCGAGGA----------------------
-TAGCTAGCTCGTGGTGGGT--TGTTGCTGTTGCCAATGATTGGGCAAAGGCGTCAAGAATAATAC----TTG----GGG
GGCATGTGCCTTGTGCGGCTTGCCTGCCGTCCTGAAGAATGAATAATTTGCGTCCTAGCTGATGATTGCTCGAGACAGGA
GCCATCAAGCTCCGTATGATCGAGCATGAAGTTATCACGTAATGTACTACGTAGCATTTGTAGTAGTATCCGGTTGTGTT
GAGTA-------TTAGCTCAGGCTTCGGCTACGCATTGTAGTCACTCTGTACAAAAGCATTGTACTGGGGTTATGCAGGC
TTCTTGTAAGGTTTTCAGACGGACATGTAA--AAAGTAGTATTCATTGCCTTAATCTATATACTATTAGATTATTACATA
ATTAAGGCAATGAATACTACTTTACTTGTCCGTCTGAAAGTTTAGTCCCACCTCGCTAGTTGAGAGGCGTTCGCAACAGT
TTATAAGCTCTGCCGCGGCTTCCGTTTCGAGCTCCTATCTAAAGCAGGCCTGTGTGGGCCTAACGAACCTCTGACTGCCC
TGTGGGGCCTACTTTTCCTGTGGGCTTGCATCCTGACCCAACTAGTAGTTGGGTTTCTACCCGTATGCAGGTCGTTGTGG
CCTAGTAGGCGGACATTTTTTTATT-----TTT--CTGTTATTTTAGTTTGCTATTAAAGTTTTTAACAAATAA-TACTT
TATGAAAATTCTTTTTGCTATTAAAGTTTTTAATAAAAAATATTTTGATAATTTTAGTTGCATAAATTTTATATAATTTT
AAGTTAATATTATTTTCATAATAACAAGAGGTTTATAAAAGTTTTTTAGTTGATTCTTTTTGCTATTGAAGAATATTATA
GTCTT-GTTTTAGTTGATCATAACATAATATTTTAATTGATTCTTTTTAGTTTATTCTTTTTGCTATTAGAGTTTTATAA
AAGCTTTTGCCTAGTAGGCGGGTA-TTTTTTATGTTATTTTAGTTTGCTATTAAAGTTTTGAA
>chr7A_365
AAAG----------------------------------------------------------------------------
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------------------------------------------------AAAAGTAGGCTTATGATTGGAGGCACCAACCC
AGCCCAAGACAAAGCCGAGGAGGCAGCGGCGACAAAAACACTCCTGTCGCGATAAACCGG-AGAGAGCGACGCGTCAGGC
GCATGAAAACAGCA-GC-GGGGCCCAGCAACAGCGACGGCCCATCCGAACCCGCCACCAAATCCACCCGACCCCTGGGCA
CGGCGAGCAGCCCGCGCGGCCCACCGTCGCCAGCTGTCAGTACTCGCAGACCACGCATTCAAAAGGCCGGGCGCCCGTCC
AGCTCAGCCCCCCGACGTGGACCTCCCCCTAGCAGCCCCA----------------------------------------
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--------------------------------------------------------------------CGCTACGGGCTA
CGGCCCGTACAGGAGCCACCACCTCCCACCGACG---------CGCGGGGCCAGCGGGGCAAGACGTGGCCACATGCTCC
ACGCCGCTGGCCGTGCATAAATACCACCTGGCTGCCACCGCATGCCCCGGCGCGGAGAAGTCCAGGGCGGGAGGGGAGGC
GAGCCGAGGCGGAGCAGAGGGAAGCGCGAGGGAGACGTCGCCCGACTGCGATGACACCAGGCGCCGACGCCGTCATCATC
GCCGTAGCAGAAGCGAGCCGGAGCGAGCAGGCCAGGA---------GCGGCGGCCGGAGCGCGGCCGAGGCGCCGTCCGT
CCCGTCGTCCTACGTCGTCTGGGAGAAGGAGCGGTAATTGGTTGGTTCGACCGAGCGA------------GCGAGCATGG
AGGTGGAGGCGGTGAGGTGCGAGTGCTGCGGCTTCACGGAGGAGTGCACGCCGGAGTACATCGCGGCGGTGCGGGCCGAG
TACATGGGCCGCTGGGTCTGCGGGCTCTGCGCGGAGGCCGTGGGCGACGAGATCCGCCGCGCGGGCGCCCGGGGCCAGCG
CGCCATCACCACGGCCGAGGCGCTCGACCGGCACGGCGCGTTCGCGCGGGAGGCGCCGCGCGCGCCCGGGAAGAAGGCGT
CCGAGGAGCTCGTGGCGGCCGTGTCGCGCCTGCTCCGGCGCTGCCTCGACTCGCCGCCGGCGTCCCCCGCCGCGCCGCAG
GGGCGCAAGGTGGCCGCGGGGCCCCGGTGCACGGACGCCGAGGATGCGTGATCGATCGCCCGGCCGGAGGCGAAGGATAG
CTAGCCAGCTCGTGGTGGTTGCTGTTGCTGTTGCCAATGATTGGGCAAAGGCGTCAAGAATAATACGTACTTCGGGCGGG
GGCATGTGCCTTGCGTGGCTTGGCTGCCGTCCTGAAGAATGAATAATTTGCGTCCTAGCTCATGATTGCTCGAGACAGGA
GCCGTCAAGCTCCGTATGATCCAGCATGAAGTTATTACGTAAT-------GTAGCATTTGTAGTAGTATCCGGTTGTGTT
GAGTAAGTAGTATTAGCTCAGGCTTCGGCTACGCATTGTAGTCACTCTGTACAAAAGTATTGTACTGGAGTTATGCAGGC
TTCTTGTGAGGTTTTTAGACGGGAGAGCATGTAAAGTAGTATT-------------------------------------
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>chr7B_408
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------------------------------GACAAAAACACTCCTGTCGCGATAAAATCGC-GAGAGCGACGTGTCAGGC
GCACGAAAACAGCAGGC-GGGGCCCAGCAACAGCGACGGCCCATCCGAACCCGC-ACCAAATCCACCCGACCCCTGGGCA
CGGCGAGCAGCCCGCGCGGCCCACCGTGGCCAGCTGTCAGTACTCACAGACCACGCATTCAAAAGGCCGGGCGCCCACCC
AGCTCAGCCCCCCGACGTGGACCTCCCTCTAGCATCCCCACGCTACTGGGGAACCGGCTCGTCTACCGTGCTGAAAGCAC
GGTAGGGGAGCTACACTAGCCTGCAGTGCCTCTGTGATTTTTCACTGCGCGCTACATGAACTCATGAACAGTGTGGTGCT
ACAGGGTGCCCGCTACAGTACATATTTATTACAGTAGATTCGCTACAGTGCATAGTGCTATAGGGCCCTGCAGTGCCTTC
TGCGATTCCCACTGCGTGGCTACTGTAGCTCCCTGCCGTGCCTTCAGCACGGTAGACGAGCCGGTTCCCGCTACTGGCTA
CGGCCCGTACAGGAGCTACCACCTCCCCCTGCCCCCACCGACACGCGGGGCCAGCGGGGCAAGACGTGGCCACATGCTCC
ACGGCGCTGGCGGTGCATAAATACCACCTGGCTGCCACCGCATGTCCCGGTGCGGAGAAGTTCAGGGCGGGAGGGGAGGC
GAGCCGAGGCGGAGGAGAGGGAAGCGCGAGGGAGACATCGCCCGACTGCGATGACACCAGGCGCCGACGCCGTCATCATC
GCCGTAGCAGAAGCCAGCCGGAGCGAGCAGGCCAGGAGCAGGAGGAGCGGCAGCCGGAGAGCAGCCGAGGCGCCGTCCGT
CCCGTCGTCCTACGTCGTCTGGGAGAAGGAGCGGTAATTAAGTTCATCGAGAGAGAGCGGAGCGGACGTCGCGAGCATGG
AGGTGGAGGCCGCGAGGTGCGAGTGCTGCGGCTTCACGGAGGAGTGCACGCCGGAGTACATCGCGGCGGTGCGGGCCGAG
TACATGGGCCGCTGGGTCTGCGGGCTCTGCGCGGCTGCCGTGGGCGACGAGATCCGCCGCGCGGGCGCCCGGGGCCAGCG
CGCCATCACCACGGCCGAGGCGCTCGACCGGCACGGCGCTTTCGCGAGGGAGGCGCCGCGTGCGCCCGGGAAGAAGGCGT
CCGAGGAGCTCGTGGCCGCCGTGTCGCGCCTGCTCCGGCGCTGCCTCGACTCGCCGCCGGCGTCACCCGCCGCGCCGCAG
GGGCGCAAGGTGGCGGCAGGCCCCCGGTGCACGGACGCTGACGACGCCTGATCGATCGCCTAGCCGGAGGCGAAGGATAG
CTAGC----TCGTGGTGGGT--TGTTC-----GCCAATGATTGGGCAAAGACGTCAGGAATAATACGTACTTG----GGG
GGCATGTGCCTTGTGTGGCTTGCCTGCCGTCCTGAGGAATGAATAATTTGCGTCCTAGCTTATGATTGCTCGAGACAGGA
GCGATCAAGCTCCGTATGATCGAGCATGAAGTTATTACGTAATGTGCTTCGTAGCATTTGTAGTAGTATCCGGTTGTGTT
GAGTA-------TTAGCTCAGGCTTCGGCTACGCATTGTAGTCACTCTGTACAAAAGCATTGTACTGGAGTTATGCAGGC
TTCTTGTAAGTTACTCAGATGGAAGGACATGTAAAGTAGTGCTCATTGTAGTAATCTA----------------------
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>chr7D_1803
GTCGA---------------------------------------------------------------------------
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-------------------------------------AAGTTTAGTCCCACCTCGCTAGTTGAGAGGCGCTCGCACCAGT
TTATAAGCCCCGCCGCGGCTTCTGTTTCGAACTCCTCTCTTAAGCGGGCCTGTGTGGGCCCAATGAACCACTTACTGCCC
TATGGGGCCTACTTTCCCCGCGGGCCTGCATCCTGGCCCAACTAGTAGTTGGGTTTCTAGTTGTATGGAGGCCGTTGTGG
CCAAGTAGGCGGGCATTTTTTTATTTTTTATTT--CTTTTATTTTAGTTTGCTATTAAAGTTTTTAACAAA-AA-CACTT
AATGAAAATTCTTTTTGCTATTAAAGTTATTAACAAAAAATACTTTGATAATTTTAGTTCCATAAATTTTATATAATTTT
AATTTAATATGATTTTGATAATAAGTAGAGGTTTGTAAAAGCTTTTTAGTGGATTCTTTTTGCTATTGAAGTATGTTATA
GTTTT-CTTTTAGTTGATCATAACGAAATATTTTTATTGATTCTTTTTAGTTCATCCTTTTTGCTATTAGAGTTTTATAA
AAGCTTTTGCCTAGTAGGCGGGCATTTTTTAATGTTATTTTAGTTTGCTCTTAAAGTTTT---
>chr4D_1803
GTCGA---------------------------------------------------------------------------
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-------------------------------------AAGTTTAGTCCCACCTCGGTAGTTGAGAGGCGCCCACACTGGT
TTATAAGCCACGCTACGGCTGAGCTGTCGAGGTCCTCTCTATTGCAGGCAGTACATGCCTAACCTTTG---TCTCTGCCA
TGTTGGGCCTGCTGGGCCCACGGGCCTGCATCGTGGCCCATGGACAGA-TGGGTTTCTAGTCGTATGCAGGCCGTGGTGG
CCTAGTAGGCGG-CATTTTTTTATT-----TTT--ATGTTATTTTAGTTTGCTACTAAAGTTTTTAACAAA-AAATACTT
TATTAAAATTCTTTTTGCTATTAAAGTTTTTAACAAAAAATTCTTTGATAATTTTAGTTGCATAAATTTTATATTATTTT
AAGTTAATATTATTTTGATAATAACTAGAGGTTTCTAAAAGCTTTTTAGTTGATTCTTTTTGCTATTGAAGAATATTATA
GTTTT-GTTTTAGTTGATCATAACAAAATATTTTAATTGATTCTTGTTAGTTCATTGTTTTTGCTATTAGAGTTTTATAA
AAGCTTTT-------------------------------------------------------
>chr7B_1806
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----------------------------------TGAAAGTTTAGTCCCACCTTGCTAGTTGATAGGCGCTTGCACCTGT
TTATAAGCCCTGTCGCGGCTACCGTTTCGAGATCCTCTCTAAAGCAGGCCTCTATGGGCCTAATGAATCTCTCACTGCCC
TGTGGGGCCTACTTGCCCTGCGGGCCTACATCCTGGCCCAGCTTGTAATTGGGTTTCTAGTCGTATGCATGCAATTGTGG
CCTAGTAGGCGGGCATTTTTTTC--------TT--CTGTTATTTTAGTTTGCTATTAAAGTTTTTAGCAAA-AAATACTT
TATGAAAATTCTTTTTGCTATTAAAGTTTTTAACAAAAAATACTTTGATAATTTTAGTTGCATAAATTTTATATAATTTC
AAGTTAATAGTATTTTGATAATAACTAGAGGTTTATAAAAGCTTTTTAGTTGTTTCTTTTTGCTATTGAAGAATATTATA
G-TTT-GTTTTAGTTGATCATGCCAAAATATTTTAATTGATTCTTTTTAGTTCATTCCTTTTGCTATTAGAGTTTTATAA
AAGCTTTT-------------------------------------------------------
>chr2A_1806
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----------------------------------TGAAAGTTTAGTCCCACCTAGCTAGTTGGGAGGCGCCCACACTGGT
TTATAAGCCACGCTACGACTGAGCTATCGAGCTCCTCTCTATTGCAGGTAGTACATGCCTAACCTTTG---TCACTGCCA
TGTTGGGCCTGCTAAGCCCGCGGGCCTGCATCCTAGGCCATGTACAGA-TGAGTTTCTAGTCGTATGCAGATCGTGGTGG
CCTAGTAGGCGG-CAATTTTTTATT-----TTTTTATGTTATTTTAGTTTGCTATTAAAGTTTATAACAAA-AAAATATT
TATGAAAATTCTTTTTGCTATTAAAGTTTTAAAAAAA--ATACTTTGATAATTTTAGTTGCATAAATTTTATATAATTTT
AAATTAATATTATTTTGATAATAACTAGAGGTTTATAAAAACTTTTTAGTTGATTCTTTTTGCTATTGAAGAATATTATA
ACTTT-GTTTTAGTTGATCATAACAAAATATTTTAATTGATCCTTTTTAGTTCATTCTTTTTGCTATTAGAGT-------
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>chrUn_1810
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--------------------------------------AGTTTAATCCCACCTCGCTAATTGAGAGAGGGCAGCACTGGT
TTATAAGGCGCGCTGC-GCTGAGCTTTCGAGCTCCTCTCTAATGCAGGCAGTACTTGCCTAACCTTTG---TCACTGCCA
TGTTGGGCATGTTGGGCCCGCGGGCCTACATCCTGGCCCATGTATAGA-TGGGTTTCTAGTCGTACGCACGCCGTGGTGG
CCCAGTAGGCGG-CAT-------TT-----TTTTTATGTCATTTTAGTTTCCTATTAAAGTTTTTAACATA-AAATACTT
TATGAAAATTCTTTTTGCTATTAAAGTTTTTAACAAAAAATACTTCTATAATTTCAGTTGCATAAATTTTATATAATTTT
AAGTTAATATTATTTTGATAATAACTAGAGGTTTATAAAAGCTTTTTAGTTTATTCTTTTTGCTATTGAAGAATATTATA
G-TTTCGTTTTAGTTGATCATAACAAAATATTTTAGTGGATTCTTTTTAGTTCATTCTTTTGGCGATTAGAGTTT-ATAG
AAGCTTTT-------------------------------------------------------
>SNPs
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S----S-----------------------
------S--------------------------------------------------S-SS-------------------
S---------------SS---S----------------------------------------------------------
-------------------------S------------------------------------------S-----------
--------------------------S-----------------------------------------------------
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------------------------------------------------------------------------------S-
-------------------------------------------------------SS-----------------------
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------------------------------------------S---------------S---------------------
----------S---------------------------------------------------------------------
-------------------------------------S-----S---SS-SS-SS---S---------------------
----S-----S---------------------------------------------------------------------
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----------------------S---------------------------------------------------------
------------------------S---------------------SS-------SSS----------------------
-----S--------------------------------------------------------------------------
---------------S--------------------------------------------S-------------------
-----------------------------------S---------S--S-------------------------------
--------------------------------------------------------------------S-----------
-----------------------SSS-S-S------------------SSS-------SSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------S-----S----
--------S---------------------------S-----------------------------------S-------
---------------S----S----S---------S-----------------------SS-------------------
------------S----------------------------------------------------------S--------
---------------------------------S--------S-------------------------------------
----------------S--------S---------------S--------------------------------------
--S----------------------S--------------------------S---------------------------
----------------------S-------S------------------S----------SSS
>forward_502
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--CATGAAAACAGCAGGTGGGC----------------------------------------------------------
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>reverse_1766
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-----TAGCTCGTGGTGGGTTGTTG-------------------------------------------------------
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