>input_sequence_81952
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---------------------------ATGGTGGACGCGGGGGCGGCGAGGAGGGCCATGCAGTTCCGCATGCCGCGGCG
CCGGAGGGCGGACGCGGCGTCGGCGTCGGC------CAGCGGGATCGGCGGCGGGCGGAGGAAGAGGATGGCGATGGCGA
GGCTGGGCGGCGATGGAGGCGGCCGCGGCGGCGGATCGGCTGAGAGGA---GGAGGTTCTTCGGCGCGCTGCGCCGGGTG
CGGGTGCGGTGGCTGGCGGCGCTGTACCGGCGGACGCTGCGGCGGCTGCGCGCGAGCTACGCCAGGGCCCTCCGCGAGCT
CGTCGAGGGTAGGGCGCTCCTGGGCGCCCTCAACGCGCCCGCCGGCGTCGAGTGCTCCCGCGCCGCGTCGTTCGGGCCGA
TGGCCACGGTCGGCTTCTGA------------------------------------------------------------
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>chr7B_1_TraesCS7B01G067600
ATTTTTTTAAGGGTATGCAAGGCGATTTGAGCACAA--CAAAATACTTGTCAAAATA-TATTATCTTGTTTTAAATTGCA
TTTGGAGTTATTTGACTTTT--TAAGTCTTAGCTATGTTCTTTTTTCGAGGGAGCTTA----------------------
---TCTGCTAGCATTATTTGCATGGCCGATTCCACCCTAGCTGTTCTTCCTAGAACAACATTTTTTGTAATGAATTTTGT
CGACTCCATTTTTAACTCATAATTTGAAGCGATCACAATGAACTCCACCAGTCCTT---TCTGGATCTGTGCAATTTCCA
TAGCTCGACACAGGCTCCAGCAGCCCATGGAG-TGGGCTCAATCAGGGGCTTGCGCACATTTTTAAC--------AAAAA
TGAACAGGTCATCTAGTCAAGTCAATGACGATCAGTTCGCCCGCCCATATGATTAAGCTAGCTCGGAATCTTCGTTTAGC
TCAGGCGGTCGGTCGTACATAACCAAGATTTGTTTACCCTGACGCATTGTCGAGCTTATCTCGCAGCAAGCAGCTTAGCA
GGCGATCGAGCTCGATCGGAATAGCTTAATCGTAATTAAGTTCCTCAGCACTTTGGTCTCGCAGTACCATGAACACACAC
ACGCACACGTATGAGTCAGTGGCTTGCTAGATTGGCGCATCCTGATTATGGGGGCGTTTGTACTTTG----TAGCATCCT
GCTCTGTTGATTATTGGTG-----------------GCCAACTGACTAAACCACCTGCTCGAACGTTGATGGATGGGCGT
CACAGCGGTCAATGCCGGCCCTTGAGTGCTCCGTGGGACGCACTACCCTTCAGGAAAAAGAGAAGACGCCATCTAAAGCT
GTATAGGCCATAGATTTTGTTATCTTTGTAGAAAACTTCAACTGCCGCACGCAGATGACGGCAGAGCACTATGGCTTGCG
CCTCACTTATATAGCTTCTTCACGTAGCATAGCAAGAAACAGGAGCAAAGAA----GAGAGAGCGAGCTGATCTCTAACC
CTGAGCATACATTTTGATTTGATCGACATGGTGGACGCGGGGGCGGCGAGGAGGGCCATGCAGTTCCGCATGCCGCGGCG
CCGGAGGGCGGACGCGGCGTCGGCGTCGGC------CAGCGGGATCGGCGGCGGGCGGAGGAAGAGGATGGCGATGGCGA
GGCTGGGCGGCGATGGAGGCGGCCGCGGCGGCGGATCGGCTGAGAGGA---GGAGGTTCTTCGGCGCGCTGCGCCGGGTG
CGGGTGCGGTGGCTGGCGGCGCTGTACCGGCGGACGCTGCGGCGGCTGCGCGCGAGCTACGCCAGGGCCCTCCGCGAGCT
CGTCGAGGGTAGGGCGCTCCTGGGCGCCCTCAACGCGCCCGCCGGCGTCGAGTGCTCCCGCGCCGCGTCGTTCGGGCCGA
TGGCCACGGTCGGCTTCTGAGTTCTCGTCGACCT----------------------------------------TGTTGG
TGTA--TGT--------GGCACCACCTTTGGTCTTTGTACATAC------------------------------------
-----------------------------------------------------------------------GAAGGTGTG
CTTCGCGCGCGGAAAGCCGCAAAACATA-------------TTTC--------TAGTGTGTTTTGGTGATTTTTAGTTCT
GTATTTGCTTGGATCTCCATTCATGTATGTAAAAATCCGGCTCTACTCAATAAATTCTA---AGTATTACGATCCGTGCG
ACACAACTATTCTCATTACATGCAAACCTTCTTTTCGTTAC---GATACCTGGCGAACGTTCGTTGCGAGTGAGATCCCA
ACGAACGCCCCAACCCCAGAGCCACACGGTCCAGATCCAAAGGATGACAGTTATTGATGAAAATGGCAATAAAAATAGAA
AAAACTT-CATGCTTTTTCTGAAAACTGCCACCACCCCTAACACTGAAAATGCCGTCCCGCGCATTCA------------
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-------------------------------------------------------CAAATGCGTGGCAGCGAACGTTCGT
TCGGGATTAGTGTCCTTTTTTTTTTACATAGCCATGTAACCGCTACAAGTGTTCAGGCTTGTACTAACAC-AGTAATACA
AAATTCTCTTTCAACTTTTTTTGAAAGAATTCTCTTTCAACTTTGAGATGCAGAATCTTACTCCATTTTTGTTGCTTATC
ATCTTTACCAATTCAAGGCCAGCCGATTCAACAATCACAGGGATGTTGCACCATTGTAAAGAGTGTGTCATTTCTTTCAC
GCAATTGCTCCTTCTGCTTCAAAGGGCTGATGCACATATTTGAATATACCCACAATATTTTTTATTTCTTTGGCTCGGTC
GTGCAAAAACTCTCTAAATTCACAAAATGATGATTTGGTTTCTCACATTGTATACTTTCTTGGGAGTTTTTTTTTCTACA
AAATGTTTTGTTGGTGTATTCGACTCCATTTTATCTTCTTTTTTTCGAGGTTCTCAAACCT--AAAAAAAGAGTCTACTT
CATTTTATCCTTTTTTTTAGTCCAAACACACTCTCATTTATTGATCATTATCCAAATACATAGGAATACATGATA
>chr7A_19
------------------AAGGCGATTTGAGCAAACCGCAAAATACTTTTCAACATATTATCTTGTT--TTAAAATTGTA
TTCGGAGTTATTTGACTTTTTATAAGTCTTAGCTCTGTTCTTTTTTCCAGGAAAGTCTTAGTGATATTCTACGAGGGAGT
TTTTCTGCTAGCATTATTTGCATGGCCGATTCCACCCTAGCTGTCCTTCCCAGACCTACATCTTTTCTAATCAATTTTGT
CAACTCCATC--TAGCTCTTAATTTGAAGCGATCACAATGAACTCCATTTAGCTCTTAATCTGGGTCTGGGCAATTTCAA
TGGCTCG--ACAGGCTCCAGCAGCCCATGGAAATGGGTTCAATCAGCAGCCTCCATACATTTGTTAA--------CAAA-
TGAACAGGTCATCTCGTCAAGTCAATGACGGTCAGTTCGCCCGCCC--ATGATTAAGCTAGCTCGGAATCTTAGTTTAGC
TCAGGCTGTCGCTCGTACATAACCAAGATTTGTTTACCCTGACGCATTGTCGAGCTTATCTTGCAGTTGCAGCAAGCCAG
AGGCGAGC-------TCGGAATAGCATATTCAC----AAGTTCCTCAGCACTTTTGTCTCGCAGTACCATGA--ACACAC
ACGCACACGTATGAGTCAGTGGCTTGCTATATTGGCGCATCCTGATTATGGGGGCGTTTGTGCTTTGTACTTAGCATCCT
GCTCTGTTGATTATTGGTGACTGTGTGGTGGCCAAGGCCAACTGACTAAACCACCTGCTCGAACGTTGATGGATGGACGT
CACAGCGGTCAATGCCGGCCCTTGAGCGCTCCGTGGGACGCACTACCCCTCCACCAAAAGAAAAGACGCCATCTAAAGCT
GTGTAGGCCATAGATTTCGTTATCTTAGTACAAAAATTCAACTGCCGCACGCAGATGACGGCAGAGCACTACGGCTTGCG
CCTCACTTATATAGCTTCTTCACGTAGCATAGCAAGAAACATGAACAAACGAGAGGGAGGGAGCGAGCTGATCTCCAACC
CTGAGCATACATTTTGATTTGATCGACATGGTGGACAAGGGGGCGGCGAGGAGGGCCATGCAGTTCCGCATGCCGCGGCG
CCGGAGGGCGGACGCGGCGTCGGCAGCGGCAGCGGCGAGCGGG---GGCGGCGGGCGGAGGAAGAGGGTGGCGGTGGCGA
GGCTGGGCGGCGATGGAGGCGGCCGCGGCGG---GTCGGCTGAGCGGA---GAAGGCTCTTCGGGGCGCTGCGGCGGGTG
CGGGTGCGGTGGCTGGCGGCGCTGTACAGGCGGACGCTGCGGCGGCTGCGCGCCAGCTACGCCAGGGCCCTCCGCGAGCT
CGTCGAGGGCAGGGCGCTCCTGGGCGCCCTCAACGCGCCCGCCGGCGTCGAGTGCTCCCGCGCCGCGTCGTTCGGGCCGA
TGGCCACCGTCGGGTTCTGAAATTCCGACCGACCTGACGGTGGGTGGGTCGGCCGTGAAAGGGTTTACTTATTATCGTGT
TGGCATTATGAGGCAGAGGCACCACCTTCGGTCTTTGTACATACTACTTCCTTCGTCCCAAAATAAGCGTCTTAACTTTA
TAACTATATTAGCTTTAGTACAAATTTATATTAAGCTTAAAACACTTATTGTGGGATGGAGGGAGTACTACGAAGGTGTG
CTTCGCGCGTAACAAGGCCGCAAACATT-------------TTTGCTCTTTTATAGTGTGTGTTGGTGATTTGTAGTTCT
GCCTTTGCTTGGATCTCCATCCATGTATGTAAAAATCCGACTCTACTCAATAAATTCTAGTGAGTATTACAATCCATGCG
ACACAACTATTCTCATTGCATGCAAAC----TTTTTTCCGTAACAATATCAGG-GAACGTTTGCTGCGAGTGAGATCCCA
ACAAACGCCCCAACCCCAAAGCCACATGGTCCAAATCCAAAGGATGGCTCTTATTGATGAAAATTGCACTAAAAATAAAA
AAATTCATGCT--TTTTCCTGAAAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTTCGCCAATGCGTGGCAACGAACGTTCGC
CGGGGATTAGCGTC--TTTTTTTTTACATAGGCATGTAACCGCTACAAGTGTTCAGGCTTGTGCTAACACGAGTAATGCA
AAATTCTCTTTCAG--------------------------CATTGAGATGCAAAATCTTACTCCATTTTTGTTGCCTATC
ATCTTTACCAATACAAGGCAATCTGATTCAACAATCACAAGGGAGTTGCACCATTGTAAAGAGAGTGCCATTTCTTTCAC
GCAATTGCTCCTTCTGCTTCAAAGGGCTGATGCACATATCTGAATATACCCAAAATATTATTTATTTCTTTGGCTCGGTC
GTGCAAAAACTCTCTAAATTCACGAATTGATGATTTGGTTTCTCATATTGTATACTTTCTTGGGAAATTTTTTT-CTACA
AAATGTTTTGTTGGTGTATTCTACTCCATTTTATC-TCTTTTTTTCGAGGTTCTCAAAAAAAGAAAAAAAAGGTCTACTC
CATTTTATATTTTTTTGAG--------------------------------------------------------
>chr7D_21
--------------------GGCGATTTGAGCACAA--CAAAATACTTGTCAACATACTATTATCTTGATTTAAATTGCA
TTTGGAGTTATTTGACTTTTCATAAGTCTTAGCTCTGTTATTTTTTCGAGAAAAGTTTAGTTATTCTATGAG--GGGAGT
TTTTCTGCTACCATTATTTGCATGGCCGATTCCACCCTGGCTGTCCTTCCTAGAACAACATCTTTTGTAATGAATTTTGT
CAACTCCAT--TTAACTCATAATTTGAAGCGAACACAATGAACTCCACCAGTACCT---TCTCGATCTGGGCAATTTCAA
TAGCTCG--ACAGGCTCCAGCAGCCCATGGAC-TGGGCTCAATCAGCAGCTTGCGCACATTTTTAATTTTAACAAAAAAA
TGAGCAGGCTCTGC------------------------------------------------------------------
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-----------------------------GGCGGCTGCGGCGGCG--GAGGAGGGCCATGCAGTTCCGCATGCCGCGGCG
CCCGAGGGCGGACGCGGCGTCGGCAGCGGC------GAGCGGT---GGCGGCGGGCGGAGGAAGAGGATGGCGGTGGCGA
GGCTGGGCGGCGAGGGAGGCGGCCGCGGCGG---ATCGGCTGAGAGCCGGCGGAGGCTCTTCGGGGCGCTGCGGCGGGTG
CGGGTGCGGTGGCTGGCGGCGCTGTACCGGAGGACGCTGCGGCGGCTGCGCGCGAGCTACGCTAGGGCCCTCCGCGAGCT
AGTCGAGGGCAGGGCGCTCCTGGGCGCGCTCAACGCGCCCCCCGGCGTCGAATGCTCCCGCGCCGCGTCGTTCGGGCCGA
TGGCCACCGTCGGCTTCTGAGGTCTGGTCGACCTAATTAATGGCGTGGTCGGCCGTGAAAGGGTTTACTGATCTTGTTGG
TGTATGTGT--------GGCACCACCTTTGGTTTTTGTACATAC------------------------------------
-----------------------------------------------------------------------GAAGGTGTG
CTTCGCGCGCGGAAAGCCGCAAACTCTTTCTTTTCTGCCCTTTTC--------TAGTGTGTTTTGGTGATGTTTAGTTCT
GTCTTTGCTTGGATCTCCGTCCATGTATGTAAA-ATCCGGCTCTACTCAATAGATTATA---AGTGTTGCAATCCGTGCG
ACACAACTATTCTGAGTGCATGCAAACATTTTTTTTCCGGTAATGATACCTGGCGAACGTTCGCTGCAAGTGAGATCCCA
ACGAACGCCCCAACCCCAGAGCCACACGGTCCAGATTCAAAGGATCACTAGT----------------------------
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>chr7D_1702
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-----------------------------------------GGATGTCAGTTATTGATGAAAATTGCACTAAAAATAAAA
AGAACTTCCATGATTTTCCTGAAAACTGCAAGCACC----------AAAATGCCATCCCGT-------------------
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------------------------------------------------GTGTTTGCAAATGCGTGGCAGCGAACGTTCGT
GCATCCTTC--------TTTCTTTTACATAGACATCTAACCGCTACAAGTGCTCAGGCTTGTACTAACACGAGTAATACA
AAAATCTCTTTCAG--------------------------CTTTGAGATGCAAAATCTTACTCCTTTTTTGTTGCTTATC
ATCTTTACCAATTCAAGGCAATCCGATTCAAC-------AGGGAGTTGCACCATTGTAAAAAGAGTGTCATTTCTTTCAT
GCAATTGCTACTTCTGCTTCAAAGGGCCGATGCACATATCTGAATATACCTACAATATTATTTCTTTCTTTGGTTCGGTC
GTGC-AAAACTCTCTAAATGCACGAGTTGATGGTTTGGTTTCTCGCATTGTATACTTTCTTGGGAATTTTTTT--CTACA
AAATGTTTTGTTGGTGTATTCTACTCCATTTTATCTTTTTTT--------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSS-----------------------------------S--------------S-----------
----------------------------------S----------------S-SS--S----------------------
--------------------------------------------S----------------S------------------
-S-------SS-------------------------------------------S--------------S--------S-
-------SS----------------------S--------------SS------------------S-------------
--------------S---------------S---------------SS------------------------S-------
------S----S-------------------------------------------------S----SSSSSSSSSSSSSS
S-SSSSSSSSSSSSS----------S--S--SSSSSS-----------------S-----------------SS------
-----------------------------S-------------------------------S------------------
----------------------------------------------------------------------------S---
--------------------------S---------------------S--SSSS------S------------------
--S--------------S--------S---S----S-----------------------------------S--------
-----------------------------------------S--S----SS--------S---------------S----
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------------------------SS----------S------SSS---------------------------S------
-------------------------------SSS----------------------S-------S--------S------
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---------S----------------------------------------------------------------------
-------S-------------S----------------------------------------------------------
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---------------------------S----------------------------------------------------
--S-----------------S-------------------------------------------------S---------
-----------------S---------S--S----SSSSSS----------------------S----------------
----------------------------------------------------------------S---S--------S--
------------S----S-----------S-S----SSSSSSSSSS--------S-----SSSSSSSS------------
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S---------S---SS---------------S------------------------------------------------
-------------SSSSSSSSSSSSSSSSSSSSSSSSSSS------------S---------------------------
-------------------S-S-----------------S--SS-------------------S----------------
---------------------------------------S-------------------S--------------------
-----------------------S--S--------------------------------------S--------S-----
---------------------S------------------------------------SSS---------SS-------S
--------SS------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_552
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----------------------------------------------------AGCTTATCTCGCAGCAAGCA--------
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>reverse_2064
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---------------------------------------------------------------ATTCACAAATGCGTGGC
AGC-----------------------------------------------------------------------------
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