>input_sequence_81941
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----------------------------------------------------------ATGGCGGAAGGCGGAGAAGGCT
CGGGCAGCCAGACCAAGTACCGTGGTGTGCGGCGCCGGCCCTGGGGCAAGTTTGCGGCGGAGATCCGCGACTCAAGCCGG
CATGGCGTTCGCATGTGGTTGGGCACCTTCGATACCGCAGAGGAGGCGGCAGCGGCGTACGACCGCTCCGCCTACTCTAT
GCGAGGCAGGAACGCTGTCCTCAACTTCCCCAACCAGGCGCATGTCTATGAGACCGAGGCGTCGCCTGGCGGTGGTGCTG
GTGCTGGTGCTGGTCCTTCTCCGTCGGTGGCGATGACGAAGGTTATTGAGTTGGAGTGCCTGGAAGACGGCGTGCTGCAG
GAGATGCTCGATGGCCACGATAAATCAAGCAAGAGCAAATAG--------------------------------------
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>chr6B_1_TraesCS6B01G069200
AGCGGGAGAGTATT-TCTTGTCTCCCGTGCCCAAAAAAGGGTTTAAGGGAGTTGAATGGGACCCTTGTTTAAGATGCTCT
TAGTCCATAGAGATATGGTGGGGCACTCACCTTTAATGGTTCCACCACAAGTCTAAGTTTCTCAACAGCCCAGACATAG-
---ACCTAATGATATACTTATATCTAATTAGCATGTTTGAAGGGCGGTTTGGTGATCCCTTTTAACTTTCAACATGGGAA
ACAAATTGTGATAATGAAATTAGGTTGTAATAAAAAAATTGATATATGTGTATGGTAGATGGTCGGTTCAGGGCTATAGA
GGATTTGATTTATT-----ATTAACTGTCCATATTTGTGCATATAATTGTATCTTTTATGGAGCAACTGGTTTGCTAAGA
TCATATTTTGTCTTGCTCATCAGCAAATCCAAGGTAGTGATGGATTAAGAAATTCATCAGCCTACGATTGATTAGTAGAA
AGCTCAATTAGCCCGGCCG-CTGATCGATTTGCTAACTATGATCAGATTCTACTTTGTTCATTTTTATTTGCTGGGGATT
CGGTTTCGCTCATTAGCAACAAAAGAGAGCAAATTAAGCCAGCTAGTGATAGATTAAGAAACTTGATTTGCTTAATAAAT
TGCTGAGTGGCGACATCACCAGTACCGGTCGGGCAGGAGTTTGAATAGTTTAGTATGCAGCCATCTGTAAGAGGTAATTA
CAGTTTTGAATATGTTTGCAAATCTGTTGCTATAGTTCTAGTTTATACGTTACAATGGAAGTGGAGATGAGAATGGCATT
TCTTTGGTCAA-TGTCCCTGCAGACGAAAGTACTATTAATTGTAGAAAGCAACTTGTATG----CACGGAAGAATATTAT
TTCTGTTTGAAGAACAGGGCAAGA-CCCCCGGCCAGAAGCATATAAGTACATACATATCTATATATGTACATGCAGCATA
TGAATACATATACACATAGTTAAGCA-GTTGCGCGATCAGGTGAGTAAGTGAGTGGACATGGCGGAAGGCGGAGAAGGCT
CGGGCAGCCAGACCAAGTACCGTGGTGTGCGGCGCCGGCCCTGGGGCAAGTTTGCGGCGGAGATCCGCGACTCAAGCCGG
CATGGCGTTCGCATGTGGTTGGGCACCTTCGATACCGCAGAGGAGGCGGCAGCGGCGTACGACCGCTCCGCCTACTCTAT
GCGAGGCAGGAACGCTGTCCTCAACTTCCCCAACCAGGCGCATGTCTATGAGACCGAGGCGTCGCCTGGCGGTGGTGCTG
GTGCTGGTGCTGGTCCTTCTCCGTCGGTGGCGATGACGAAGGTTATTGAGTTGGAGTGCCTGGAAGACGGCGTGCTGCAG
GAGATGCTCGATGGCCACGATAAATCAAGCAAGAGCAAATAGCAGCTATGCCATATATACATTTTGGCAGGGTAAGTGTG
TTGTGTATCCATTGTATGGTAGACTTGGCCGTCGAAGAGTTGTCTGGTACGGCGTACACCGTGACGGCGACTTAATTCCC
GCCACTACTCTCCGCTTGTAACTTTTTTTTTTGAAACTGCACCCTTTGTTAAAGTTCAATGTTTCATAAGGATACAGAAG
ATATCGGGCAAAGATACAAGCCACACATGGCGCCCGGTAGAAAGAGAAGTACTCGCCTTGGCGGGAGCATGTGCCTCACC
ATTGTACTAATGCTTCTCGTGGATAAACTAAAAATCTCGGAAGGAGCTCCGCAGGGCCTTGAACTCCCTTAGAATTGTAA
CATACCGACATGGAGCGCCTGATCCAATATTAGCCACCACCTTAGAATTGTAACTTGTAAGTGTCACGTTTTGTGCCGCC
CTGGGCCTTCTGGTTCTGGGCGAGCGCTGAGAATTTCTGAATCTGCTCACTGTTTGGCCTAATCTCGTTGCGCCTATGCT
TGTGCAAATCGGTCAGGAAATAAGCCTGCCATGGCAGCGTTTTTCGCTGGCATGAGGCTACTAATAGTGGAAACTATCAT
ATATTAGTATTGTCCATATGATAATATCTTCATCGTGCATGCATGATACATAGTAGTGTAATATTTATTATAATATGCTA
TCTACCTATGTTACTTTAACCTTCTCTCTCTTCTTTAGTTGTCTGCCTCATCAGCGTGTTTGCTAGTCTTGATCGAGTGC
ATGATACCGGCTAAGATGTCACCACCATGGCCAGCCTGAGGCAAGCCAATTTTGTTGCCACAACATCCCATTTAGTTAGC
GATTCTGTTAGCGTTTCTTTGACTTGTTTTTGCTTTGATCAGGACGATGGACGTGGTCTGTACGATACTCTATGAATGAG
TAGGAAGGCCTGGTTTACTAGAAAAGGTAGGAAGGCCTGGTGCAATCACGGGTCGTGGGATGGCATGATTGCGAGCTCCA
AG
>chr6A_3
--CGGGACAGTATTTTCTTGTCTCCGGTGCCCAAAAAAGGGTTTAAGGGAGTTGACTAGGACCCTTGTTTAAGATGCTCT
TAGTCCATAGAGAGATGGTGGGGCACTCACCTTTAATGGTTCCACCACAAATCTAAGTTTCTCAACAGCCCAAACATAGA
TGTACCTAATGATATACTTATATCTAATTAGCATGTTTGAAGGGCGGTTTGGAGATCTCTTGTAACTTTCAACATGCGAA
ACAAATTATGATAAGAAAATTAGGTCGTAATAAAATATTT-----------------GATGGTCGGTTCAGGGCTATAAA
CGATTTGATTTATTTAATTATTAACTGTCCATATTCGTGCATATAAGTGTGTCTTTTATGGAGCAACTGATTTGCTAAGA
TCATATTCTGTCTTGCTCGTCAGCAAATACAAGGTAGTGATGGATTAAGAAATGCATCGACCTGCGATTGATTAGTAGAA
AGCTCAATTAGCCCGGCCTTCTGATCGATTTGCTAACTAAGATCAGATTCTATTTTGTTCATTTTTATTTGCGGGGGATT
CGGTTTCGCTCATCAGCAACCAAAGAGAGTAAATTAAGCTAGGTAGTGATAGATTAAGAAACT------------TAAAG
TGCTGGGTGGCGACATCACCAGTACCGGTCGGGCAGGAG-----------------------------------------
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--
>chrUn_156
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----------------------------------------------------------------------------TAG-
---ACCTATTGATATACTTATATCTAGTTAGCATGTTTGAAGGGCGGTTTGATGATCCCTTTTAACTTTCAACATGGGAA
ACAAATTGTGATAATAAAATTAGGTTGTAATAAAAAAATTGATGTATGTGTATGGTAGATGGTCGGTTCAGGGCTATAGA
GGATTTGATTTATT-----ATCAACTGTCCATATTCGTGCATATAAGTGGATCTTTTATGGAGCAACTGGTTTGCTAAGA
TCATATTCTGTCTTGCTCATCAGCAAATCCAAGGTAGTGATGGATTAAGAAATTCATCGACCTACGATTGATTAGTAGAA
AGCTCAATTAGCCCGGCCG-CTGATCGATTTGCTAGCTATGATCAGATTCTACTTTGTTCATTTTAATTTGCTGGGGATT
CGGTTTCGCTCATTAGCAACAAAAGAGAGCAAATTAAGCTAGGTAGTGATAGATTAAGAAACTTGATTTGCTTAATAAAG
TGCTGGGTGGCGACATCACCAGTACCGGTCGGGTAGGAGTTTGAATAGATTAGTATGCAGCCATCTGTAAGAGGTAACTA
CAGTTTAGAATATGTTTGCAAATCTGTT----------------------------------------------------
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>chrUn_721
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-----------ATGTTTGCAAATCTGTTGCTAAAGTTCTAGTTTATACGTTACAGTGGAAGTGGAAATGAGAATGAGATT
TCTTGGGTCAAATGTCCCTACAGTCGAAAGTACTAATAAATGTAGAAAACAAGTTGTATGCATTCATGGAAGAATATAAT
CTCTGTTTGAAGAAGAGGGCAAAACCCCCCGGCCAGAAGCATATAAGTACATATATATCTAT----GTACATGCAGCATA
TGAATACATATACACATAGTTAAGCAAGTTGTGCGATCGGGTGAGTGAGTGAGTGGCCACGGCGGAAGGCGGAGAAGGCT
CGGGCAGCCAGACCAAGTACCGCGGGGTGCGGCGCCGACCCTGGGGCAAGTTTGCGGCGGAGATCCGCGACTCAAACCAG
CACGGCGTCCGTGTGTGGCTGGGCACCTTTGACACCGCCGAGGAGGCGGCGGCGGCATATGACCGCTCCGCCTACTCCAT
GCGCGGCAGGAACGCCATCCTCAACTTCCCCGACCAGGCGCACGTCTACGAGACCAACGCATCGCGTGATGGTGGC----
-----GGTGCTGGTCCTTCTGCGTCGGCGGCCAGGACGAAGGTGATTGAGTTGGAGTGCCTAGAAGACGGTGTGCTGCAG
GAGA----------------------------------------------------------------------------
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--
>SNPs
SS-----S-----------------S-----------------------------S-S----------------------
-------------S------------------------------------S---------------------S-------
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---------------S---------------------------S------------------------------------
-----------------------------------S----------S---------------------------------
-------S--------------------------------------------------SS--------------------
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---------------------------------------S--S------------------------------------S
-----S------------------------------------------S----------------------------S--
------S-------------------------S---------------------S----------S---------SS---
----S--------------S---S-----------S---S--------S---S-------------S----------S--
S-------------S-------S------------------------------S--------SSSS--------------
-------------------------------S------S-------S---------S--S--------------------
----------------------S--S-----------S-------------------------------------S--S-
--S-----S--SS-----S----------S--S-----S-----------S-----S--S-----------------S--
---S-----------SS--------------S----------S-----S------S-S--S----S--SS-----SSSSS
SSSSS---------------S------S---S-S---------S-----------------S--------S---------
----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS
>forward_1007
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---------------------------GTTGCGCGATCAGGTGAGTA---------------------------------
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--
>reverse_1860
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-------------------GCGAGCGCTGAGAATTTCTG-----------------------------------------
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--
