>input_sequence_81937
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---------------------------------------------------------------------------ATGGG
GGCCTCAACTGCTGTGCAATGGTGGGATGAGTGGCAGCTTCGCGTCCTGGTGTTGGGCAGTCTTGGTGTTCAGTTCTTCC
TCGCTTTTTTCTCTCGCAGCCGTAAGTCCCGTATACCCGACTGGTTCAGATTTTCCATATGGCTTTCGTTCCTAGGAAGC
GATGCGCTCGCAATATATGCCCTCGCCACGCTCTTCAACCTTCAAAAAAGGTCCCTAGCTGAAGACGACGGCCGTGGTTT
GGAGGTCTTATGGGCACCTGTACTTCTAATGCACCTCGGTGGGCAGGCCGCTATAACGGCCTACAATATTGAAGACAATG
AGCTATGGAAACGGCACATAGTTACTGCCGTGTCTCAGGTACATACAACATGCGCGTAG---------------------
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>chr5B_1_TraesCS5B01G441100
GGGTTACCATGGAGGTGACTGAGGGTGGAGACGCCGGCCATGAGGAAGAAATTTGGTACCGCGGAAGCGTACCTTTTTTT
TTTTT---GAGAAACTTCCTATCTATAAATAATCAATCATGACAATAGAAAGAACATCATATATAACAAAAATTACAAAC
AGGTCCATGGACCACCTAGCGACGACTACAAGCATTGAACCGAGCCGAAGGCACGACGCCGTCATCATCCTTCCTA-ACT
GGTGCCAGGCAAACCTTATTGTAGTAGACAACCGGAAAGTCATAATGCTAAGGCCCCATATGACCAATTCACCAAAACAG
CAATCATCGCTGATGAAGAGAGTCGTAGATTGGAAGGGTCAAAC-TGTAGACAC----------AAGACCAAAGACTGGA
TCCAAACAGATTCAC-----------------CGAAGACTTGCATCGATTGAATACAACGAGATCCAATAGAGACACACC
TCCCGACACCCTCCGAC---GCTAGACACACCATCTGGACAGAGATCAAACGAGGCAGACATTTATTCGTATTGAGAGAC
AATGCTACCGCCACACAACTCCAATCAAGACGCTGAACCTAACAAAAACATGAGCGGGGCCCCGAGGTCCTCCGTTCCTC
CACGGCCCAAAGGCCATCGAAGTGGGGGCAGACCGGCGGTGGCGCCAGCGGAAGGAGGAGAAAACCTAATCATTTGGGAG
TATTTTCTTCTAGTTATATGAAAAAGTTTTACTTACAAAACTCACGTTGTGACGTGCAGGCAACATTCTTCTAGTTGTCA
TTATTGTTAAACCAGACGTGCATTGCAAACTCAAATTAGAATTGACAATTCTCTAGTCTTCTCTCTACCATAGATGCCTT
CACTTATATATCAAACTTTTAAGTGCAACTTGCGTATTTCATTAGACAGCCTGGCTCCTGGCCCCGCCTGCCGTATAGTA
CAGAAGAAAAAAGACTATGGGGGGTGACTAAGTATAAAGGGAGAGAGGAGCGGTGAGCAGTCGGAAACGAGAATAATGGG
GGCCTCAACTGCTGTGCAATGGTGGGATGAGTGGCAGCTTCGCGTCCTGGTGTTGGGCAGTCTTGGTGTTCAGTTCTTCC
TCGCTTTTTTCTCTCGCAGCCGTAAGTCCCGTATACCCGACTGGTTCAGATTTTCCATATGGCTTTCGTTCCTAGGAAGC
GATGCGCTCGCAATATATGCCCTCGCCACGCTCTTCAACCTTCAAAAAAGGTCCCTAGCTGAAGACGACGGCCGTGGTTT
GGAGGTCTTATGGGCACCTGTACTTCTAATGCACCTCGGTGGGCAGGCCGCTATAACGGCCTACAATATTGAAGACAATG
AGCTATGGAAACGGCACATAGTTACTGCCGTGTCTCAGGTACATACAACATGCGCGTAGGAGTATATTGTTAGCAATTTT
TCTGCCTACACACATCTCAAAATTAATCATTTCCTCGATTCTCCACTTTTGCTCGCTGTCTCAGATCACGGTGGCCGTCT
ACGTGTTCTGCAAGTCATGGCCGTCGTCAGCCGATAAGAGGTTATTGGCCGCAGCAGTTTTGCTTTTTATCCCCGGGGCT
GCCAAATGCTTCGAGAAACCCTTGTCTCTCATGAGATCTAGCTTGACTAGCCTCTCCGCCTCTATCAGTCTCATTCGGCG
CACTACAGCGCCTAGTGACAGAGAGGAAGAGCTCGAGGCATTTGTACAGGAAGCAAGGGCAGCGATCCTCCTAAAAGACC
ATGAGAAAACCGACCCAGAAAAAGCCAACTATTTACCTAGGAAACTGTTTTTAGACTATGCCGATAACTACTCTTTTCGC
CTCACTAGAATGAAATGCTTTTGTCTCCTTGACGACAAAGAAGCAGACGAGGCATTGACATACGCGCTCGGCAATATTTT
TGACTATCTCTACACCAAAGCAACCGATTGCTCCAAAAGATTTGATAGACTACCCAAGAACTGCCTTATTTGGACGTTTG
TATTGTCCATGACATTGCCTATTGTCTCCATTGGCCTCGTCCATAAGAGCCTCACAAAAGCATACACCTATAGTGATGTC
AATATCACATTTGTGTTATTGTACGGAACTCTTCTCTTAGAGTTTATTTCTGGGTTCGGTCTACGAGATTTCGCGGGTAA
ATGGCCTGCCATGGTTGCTCAACATAACCTTATAGGGTCCTTTGCCCGCGATAAAAGGCGTAGGAAGTTGACGAGCTTTG
GAAGACGCAAGGAGTCCTGCAGCTCGTCCAAGGAGATTACAAAGTTAGTACGTCAACATGCCGAAGATGGATGGAAGGAG
TTCATAACAGATTCTCAGAGTTACAGAGAGTTCAACAGCACCAGGGGCCAATGGACACTTGAGCGCAAAGGATGCACCGA
TCTGAATCTAGCATGGGTC
>chr4A_71
ACCTT-------------------------------------------------------------------------TT
TTTTGCGAGAGAAATTTCCAATCTAT---TCATCAATCATGGCAGTACAGAGAACACAAGAGGTAATAAAAATTACAACT
AGGTCTATGGACCACCTAGCGACGACTACAAGCACTGGAGCGAGCCGAAGGCGCGCCGCCGTCATCACCCCTCCATCACT
GGAGCCGGGCAAACCTTGTTGTAGTAGACAGTCGGGAAGTCGTCGTGCTAAGGCCCCAAAGGACCAACACACCGGAGCAG
CAACCATCGCCGATGAAGAGAGTTGTAGATTGGAAAGATCAAACCTGGAACCACACGAACGAAGACAAACAAAAACTGGA
TCCAAAGAGATCCAC-----------------CGAAGACCAGCACCGACCGAATCCCATGAGATCCGACGGAGACACACC
TCCACACATCCTCCGACAACGCTATTCGCACCATCGGGACGGAGATAGGACGTGGGAGACA-TTATTGCTACGGAGGGAC
ATCGCCGCCGCCAAACAGCCCCAACCAAGACGTTCAACCTATCAAAAACAAGAACGGGGTCCC-----------------
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>chr5B_73
CTTTTCT----------------------------------------------------------------------TTT
TTTTGCGACAGAAATTTCCAATCTAT---TCATCAATCATGTCAGTACAGAGAACACAAGAGGTAATAAAAATTACAACT
AGGTCTATGGACCACCTAGCGACGACTACAAGCACTGAAACGAGCCGAAGGCGCGCCGCCGTCATCACCCCTCCATCACC
GGAGCCGGGCAAACCTTGTTGTAGTAGACAGTCGGGAAGTCGTCGTGCTAAGGCCCCAAAGGACCAACACACCGGAGCAG
CAACCATCGCCGATGAAGAGAGTTGTAGATTGGAAAGATCAAACCTGAAACCACACGAACGAAGACAAACAAAAACTGGA
TCCAAAGAGATCCAC-----------------CGA-----------------ATCCCATGAGATCCGACGGAGACACACC
TCCACACATCCTCCGACAACGCTATTCACACCATCAGGACGGAGATAGGACGCAGGAGACA-TTATTGCTACGGAGGGAC
ATCGCCGCCGCCAAACAGCCCCAACCAAGACGTTCAACCTAGCAAAAACAAGAACGGGGTCCC-----------------
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>chr3D_73
------------------------------------------------------------------------CTTTTTTT
TTTTGCGAGAGAAATTCCTAATCTAT---TCATCAATTATGGCAGTACAAAGAACACAAGATGTAATAAAAATTACAACT
AGGTCTATGGACCACCTAGCGACGACTACAAGCACTGGAGCGAGCCGAAGGCACGCCGCCATCATCGCCCCTCCATCACC
GGAGTCGGGCAAACCTTGTTGTAGTAGACAGTCGGGAAGTCGTCGTGCTAAGGCCCCAAAGGACCAACACACCAGAGCAG
CAACCATCGCCGATGAAGAGAGTTGTAGATTGAAAAGATCAAACCTGGAACCACACGAACGAAGACGGACAAAAACTAGA
TCCAAAGAGGTCCACGGAAGACCAGCACCGATCGA-----------------ATCCCATGAGATTCGACGGAGACACACC
TCCACACATCCTCCGACAACGCTATTCGCACCATCGGAACGGAGATAGGACGTGGGAGACA-TTATTGCTACGGAGAGAC
ATCGCTGCCGCCACACAGCCCCAACCAAGACGTTCAACCTAGCAAAAACAAGAACGGGGTCCC-----------------
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>chr3B_73
CTTTT-------------------------------------------------------------------------TT
TTTTGCGAGAGAAATTTCCAATCTAT---TCATCAATCATGGCAGTACAGAGAACACAAGAGATAATAAAAATTACAACT
AGGTCTATGGACCACCTAGCGACGACTACAAGCACTGGAGCGAGCCGAAGGCGCGCCGCCGTCATCACCCCTCCATCACC
GGAGCCGGGCAAACCTTGTTGTAGTAGACAGTCGGGAAGTCGTCGTGCTAAGGCCCCAAAGGACCAACACACCGGAGCAG
CAACCATCGCCGATGAAGAGAGTTGTAGATTGGAAAGATCAAACCTGGAACCACACGAACGAAGACAAACAAAAACTGGA
TCCAAAGAGATCCACCGAAGACCAGCACCGACCGA-----------------ATCCCATGAGATCCGACGGAGACACACC
TCCACACATCCTCCGACAACGCTATTCGCACCATCGGGACGGAGATAGGACGTGGGAGACA-TTATTGCTACGGAGGGAC
ATCGCCGCCGCCAAACAGCCCCAACCAAGACGTTCAACCTAGCAA-----------------------------------
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>chr6A_86
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--------GAGAAATTTTCAATCTAT---TCATCAATCATGGCAATACCGAAAACACAAGAGGCAATAAAAAATACAACC
AGGTCTATGGACCACCTAGCGACGACTACAAGCACTGGAGCGAGCCGAAGGCGCGCCGCCGTCATCGCCCCTCCATCACC
GAAGCCGGGCAAAACTTGTTGTAATAGACAGTCGGGAAGTCGTCGTGCTAAGACCCCAAAGGACCAGCACACCAGAGCAG
CAACCATCACCGATGAAAAGAGTTGTAGATCGGAAAGATCAAACCTGTAATCAC----------ACAAACAAAAACTGGA
TCCAAATAGATCCACCGAAGACCAGGACCAACCGA-----------------ATCCCATGAGATCCGACAGAGACACACC
TCTATGCCTCCTCCGACAATGCTATTCGCACCATCGGGACGGGGATAGGACGTGGGAGACA-TTATTGCTACCGAGGGAC
ATCGCCGCCACCACATAGCCCCAACCAAGACGTTCAACCTAGCAAAAACGAGAACGGGGTCCC-----------------
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>SNPs
SSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------
----S---------S----S------SSS-S----------S-----S--------SS-S------S-----------S-
-----S----------------------------S----S---------------S-----------S--S---SS----
--S---S----------S------------SS---S-----S-SS-------------S-S------SS-----S-S---
---S------S------------S-----------S-S-----------SS--------------S--S----S------
------S----S---------------------------SS---S---SS----S-S-S-------S-S-----------
---SS---S---------------SS---------S----S-----SSS---S--S-----S-----SS--SS-------
-SS---S----------S-S----S-------S-S------S--------S--S-----S---SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS
>forward_830
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----------ACCAGACGTGCATTGCAAAC--------------------------------------------------
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>reverse_2147
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------------------------------------------------------------------GATTTCGCGGGTAA
ATGGCC--------------------------------------------------------------------------
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