>input_sequence_81924
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--------------------------------------------------ATGTCGGCGGTGGTTGTGCAGGACGTCGTG
CCGCCCATCGAGGCTGCCTCGGCAGCCGAGGTGGAGTGGGCGGCGTGCGCGTGCTGCGGGCTGAGGGAGGAGTGCACTGC
GGCGTACGCGGCCGGCGTGCGCGCGCAGTACGCCGGGCGGTGGCTGTGCGGCCTCTGCGCCGACGCCGTGGGCGAGGAGC
TCGCTTCGGCTGGCGTCGGGGGAGGAGGATCGGCCACGGCGGAGGTAGAGGCGGCGATTGCGAGGCACGCCGCCTTCTGC
CGGTCGTCGCCCGCAGCGGCCGAGCGGCTCATCGCCGCGGTGCGGCGGCTGCTCCGCAGCCAGAGCGGGAGGAAGGCGAA
GGCCGTGGTGGTGCTCGAGTTCCAGGAGGCCTGA----------------------------------------------
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>chr4B_1_TraesCS4B01G296000
ACAGCGTGCCGAAGAGCTCTCTTTGGCTAAGACTAGGCCGAAAAGCCCATCTTCGGCCTATAGAAGGCCGACGGGGTCAT
AGTATTGCTTTTTTACCCTTAGGTGCTATAGTTTTCGTATTTGCTACAAAAAAGTCACAGTTTTGAAAAAAATCCCGTTT
TGGCTTTGGAGCTCCACCTTTACTAACTTTCGTCCCCCATAAAATCGACTTATTCCAATTTATTTTTAGGCAACTTATCA
ATAGCAAATGCCCTAAAAAGGATATTGTTAGCCAGCGTACG-TCAACTGGGAGAGGGGTGGCAAGCAAACTACATTTGAT
GGTAGCTTTAACTGTGAGAAAAGATCAAACGGCGACAGCTTTAAAACAAAAAACAGTCTGCTCTGAAGAAATTGTCATGT
CGCTCTGAAAAAACTACCATGCCCTCACAACTAAAAATCCACCTAAAACTTTCGCAAATGTCACC-TCCCTGACGAACAT
TTGCCAGTTAACAGAGTTCTAAAAAATAGACATTTATAACCTTACCAAAATATCCACAGGATTCTCGAACTTTGTATCGT
GGGCTAGATTAGCATCTCTCCGGAAGTGCTACGTAGATATCACTGCCAGCTAGACGAAGCACCGCATCGAACACCCAAAG
CGATACCTCAATGATTTCGGCTGGTGGGCCCACCCCACCTCACCCCAACCCCGGCCCCGGCCCGCCATTTGAACCCCCAC
TACACTTCACACTCCCCCCCGGCCAG------------------------------------------------------
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-----------------------------CTCGTCGCATACAAAAGACGCGTCGCGGAGCGAGCTGCTCCACCAGCCCGA
GCTCCTCCGATGTCACCCACCTCCTCCACCTCGTCCATGGACGACCAGCCGCTCCTCCCGCTCGCCCGCGGCGACTACCG
CCTCTTCGTCTTCCTCTAACGACACCATCCAAACACGAGAGGCGACAAGAATCAGCATCAGGGCCTTGATC-----TAGA
GCCGTCCTCGACCAAGATCCAAGAAGAGGGAGGTTTTTCACCGTGGTGGCATGTCGGCGGTGGTTGTGCAGGACGTCGTG
CCGCCCATCGAGGCTGCCTCGGCAGCCGAGGTGGAGTGGGCGGCGTGCGCGTGCTGCGGGCTGAGGGAGGAGTGCACTGC
GGCGTACGCGGCCGGCGTGCGCGCGCAGTACGCCGGGCGGTGGCTGTGCGGCCTCTGCGCCGACGCCGTGGGCGAGGAGC
TCGCTTCGGCTGGCGTCGGGGGAGGAGGATCGGCCACGGCGGAGGTAGAGGCGGCGATTGCGAGGCACGCCGCCTTCTGC
CGGTCGTCGCCCGCAGCGGCCGAGCGGCTCATCGCCGCGGTGCGGCGGCTGCTCCGCAGCCAGAGCGGGAGGAAGGCGAA
GGCCGTGGTGGTGCTCGAGTTCCAGGAGGCCTGAACCTGAAGCAGATCGAAGATCTGTTCGTTCAGAAGCTAGCTTAAAA
TTCTCTTCATCTACAGTACAATTCAGTATGCTTTCGTAATTTATATACATATATAGTATTTAGTTTCTGAATACTATCTA
GACGCTTAATTTGGAGACCAAGTCTGCAATATCTTCAGCTTATTTGTGTAAATCTGATGACATGATGGAAGTAAAACCAC
ATTGTAGATGACACGAGAAAAATGTATAGATGGAGCTGAGGTCGAATAATTCCAGTTTAAGAAATGTCAAACTATTGAAT
CAAATAATGGCAAAGGTATTGCGTTCGGGGTTTCCCTTTTGACCTGGCACTTTGGAACTTCAGACTTTGCGGAATTTGGC
ATATATGCCATAGGCATTCAGACAAGCATGCCAGAACATTTTAATAGCAGCTGTCTTTTTCTCACCCGTAGTTCTAAAAT
TTACAAGCAACAATAATGCAAGATTATA----------------------------------------------------
-------------------------------TATGCATAAATAGACTCGAAGAGTATCATTCACGACAAACGAGTGGACC
CTTTCCAGAGCACGCGGACAGGTCGATGCATCTATCCAACAGAGTCACTGACACTGTTGTGCTTCCTTACACGGTAGCAT
CAGAGTGCATTCCACTTGCAGATGTGCGAGCCACTTCAAGTAGAAAGCAATACTAGTAACAAGTTGTGCATTGCAGTGAT
GTTACTCAAAGTAGAAAATGTATCCACCTGGGATTGTGGTAAGCTCTCGAATGGAGTGTAAAATGTTTCCAACTAAGTTA
CTTGAAGTGGAAACAAG-----AACTTGCACACAGAAAAGGAAGAAGACTAGAAGTGTAAAGCAAGAACAGATGTGCAAT
TTGCCAATTGCAGCAAGCAAGCAAGATTTGTTCTTATCTGCTAGCTGGCCTGCCAATGGGAACCATGCATGTTCTGATGC
TCCCTCTCAATTGTTTGATTAATCAGGAAATAGAAGGATAAAATTGCC--AAGTCAACTTTTGCTCACAAACAAAATGCA
AAGC
>chr4D_222
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-------------------------------------------------------------ATTTTTAGGCAACTTATCA
ATAGCAAATGCCCTAAAAAAGGGTAACGTTGGTCAGCCAACATCAACTAGAAGAGGGGTGGCAACCGAACTACATTTGAT
GGCAGTTTTAATTGTGAGGGAAGATCAAATGACGACAGTTTTAAAACG-AAAAATGTCTTCACTGAAGAAACTATCATGT
-------AAGAAACTACCGTCCCCTCACAACTAAAA-TCCAGCTAAAACGTCCGCAAATGTCGCCCTCCCTGACAAACGT
TCGCCGGTTAACAGGGTCCTTGAAAAATTAAATTTAGAACCTTACCAAAATATCCAACGATG-CTCGAACTTTATATCGT
GGGCTAGATTAGCATCTCTCCGGAAGTGCTACGTAGATATCACTGCCAGCTAGACGAAGCATCGCATCGAACACCCAAAG
CGATACCTCAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGTCGCATACAAAAGACGCGTCGCGGAGCGCGCTGCTCCACCAGCCCGA
GCTCCTCCGATGTCACCCACCTCCTCCACCTCGTCCATGGACGACCAGCCGCTCCTCCCCCTCGCCCGCGGCGACTACCG
CCTCTTCGTCTTCCTCTAACGACACCACCCAACCACGTGAGGCGAGAAGAATCAGCATCGGGGCCTTGATCTAGACTAGA
GCCGTCCTCGACCAGGATCCAAGAAGAGGGAGGTTTCCCACCGTGCTGGCATGTCGGCGGTGGTTGCGCAGGACGTGGCG
CCGCCCATCGAGGCTGCCTCGGCGGCCGAGGTGGAGTGGGCGGCGTGCGCGTGCTGCGGGCTCAGGGAGGAGTGCACTGC
GGCGTACGCGGCCGGCGTGCGCGCGCAGTACGCCGGGCGGTGGCTGTGCGGCCTATGCGGCGACGCCGTGGGCGAGGAGC
TCGCCGCGGCTGGCGCCGGCGGAGGAGGATCGGCCACGGCGGAGGTAGAGGCGGCGATCGCGAGGCATGCGGCCTTCTGC
CGGTCGTCGCCCGCAGCGGCCGAGCGGCTCATCGCCGCGGTGCGGCGGCTGCTCCGCAGCCAGAGCGGGAGGAAGCCGAA
GGCCGTGGTGGTGCTCGAGTTCCAGGAGGCCTGAACCTGAAGCAGATCGAAGATCTGTTCGTTCAGAAGCTAGCTTAAAA
TTCTCTTCATCTACAGTACAATTCAGTATGCTTTCGTAATTTATATACATATATA---TTTAGTTTCTGAATACTATCTA
GACGCTTAATTTGGAGACCAATTCTGCAATATCTTCAGCTTATTTGTGTAAATCTGATGACATGATGGAAGTAAAACCAC
ATTGTAGATGACACGAGAAAAATGTATAAACGGAGCTGAGATCGAATAATTCCAATTTAAGAAGCGTCAAACTATTGAAT
CAAATAATGGCAAAGGTATTGCATTCCGGGTTTTC--TTTGACCTGGCACTTTGGGACTTCAGGCTTTGCGGAATTTGGC
--ATATGCCAGAGGCATTCAGACAAGCATGCCAGAGCATTTTAATAGCAGCTGTCTTTTTCTCACCTGCAGTTCTAAAAT
TTACAAGCAACAATAATGCAAGATTATACTCCCTCTGTCCCATAATATAAGAACGTTTCTGACACTAGTGTAGTGTTAAA
CACGTTCTTATATTTTGGGACAGAGGGAGTATATGCATATATAGTCTAGAAGAGTATCATTCACGACAAACGAGTAGACC
CTTTCCAGATCACGCGGACAGGTCGATGCATCTACCCAACAGAGTCACTG------TTGTGCTTCCTTATACGGTAGCAT
CAGAGTGCA----ACTTGCAGGTGTGCGAGCCACTTCAAGTAGAAAGCAATGTTAGTAACAAGTTGTTCATTGCAGGGAA
GTTACTTAAAGTGGAAAATGTATCCACCTGAAGTTGTGGTAAGGCCTCAATTGAAGTGCAAAGTGTATCCAGCTAAGTTA
CTTGAAGTGGAAAACAAGAAGTAACTTGCACACAGAAAAGGATGAAGACTAGAAGTGTAAAGCAAGAACAGATATGCAA-
--GCCAATTGCAGAAAGTAAGAAATATTTGCTCTTATCTGCTAGCTGGCCTGCTAATGGGAACCATGCATGTTCTGATGC
TCCCCCTCGTTTGTTTAAATAATCATGAAACAGGAGACCTAATTTTGCCTAAGTCAACTTTTGCTCACAAACAAAATGCA
AAGC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------
-------------------S-SSSSSSS-S-SSSSSSS-SS-------S-S-------------S-S-------------
--S--S-----S------SS---------S-S------S--------SS----SS----S-S---------S-S------
SSSSSSS--S--------S-S---------------S----S-------S-S----------S-----------S---S-
-S---S--------S--S--SS----SSS-S-----S-------------------SS-SSSS----------S------
-------------------------------------------------------------S------------------
-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------------------------
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-------------------------------------------------------------S------------------
-----------------------------------------------------------S--------------------
---------------------------S----S----S-------S-------------S--------------------
--------------S---------------------SS-------S--------------------S---------S-S-
-----------------------S--------------------------------------S-----------------
------------------------------------------------------S----S--------------------
----SS---------S---S--------------------------------------S--------S--S---------
---------------------------------------------------------------------------S----
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-------------------------------------------------------SSS----------------------
---------------------S----------------------------------------------------------
----------------------------S-S---------S-------------S--------SS---------------
----------------------S---S------S-SS------------------S-------S----------------
SS--------S------------------------S------------------------------S-S-----------
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---------------------------------------S----S--S---------------------------S----
---------S------------------------S---------------SSSSSS-------------S----------
---------SSSS--------S-----------------------------SS--------------S--------S--S
------S-----S-----------------SSS----------SS---S-S--S----S---S---S----S--------
-------------SS-S-------------------------S------------------------------S-----S
SS-----------S---S---S--S-----S----------------------S--------------------------
----S---SS------S-S------S----S--S--SSSS--S--SS---------------------------------
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>forward_1238
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------------------ACGACACCATCCAAACACGA------------------------------------------
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>reverse_2390
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---------------------------------------------------------------------CACGGTAGCAT
CAGAGTGCA-----------------------------------------------------------------------
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