>input_sequence_81923
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---------------ATGGCCATGGGCAACAATGGCGTCAAGGTCACCTACATCGAGACGCAGTTCGTCACCTCCGACGC
CGCGAGCTTCAAGTCCCTCGTGCAGCGCCTCACGGGCAAGTCCGGCGCCGAAGCCGCCGACGCGCGCCTGCCCCACCGGC
CGCGCCCCTGCCGCGCCGCCGCAGCCGAGAGGACCAGCGGTGTTACTGGAGCGCCGACCTATTTCATGTCCACCACTGCG
GGCTCGGCTGTTAGTGCAGCTGCGGAGGACGTGCAGATAGAGAAATTCGCTGCCAACGCCGGCGATTACTCGGAGCTGGA
GGGACTTTGGGATTACTCGGAGCTGTTCTGCGCAGCCGAACGGTGCCATGGCGGTAGTTACAGTGATCTCCTCTATTGA-
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>chr4B_1_TraesCS4B01G295300
GCTTACAAATCTCCTCCGAAGGAGGCCACTCGCGCCTCATGCTCTTTTCGTTTCCTCTGCTCGTCATCAGACGTCTGCAT
CCTCTGTTCGTACCTCTGCCGGCGTAGGTCGCGCATGACGGGGTCGCCGGCAGGCAAGTTGTGGTGCTTTTGTGCCCCCC
TGCCCGGCCGGCCGAGACGTGCAATGGCCACCCGTGCCCTTGGACGGCGGAG-------GCGTGCTGAACGGGCTGATCC
ACGTGGTGCTGGGGCTGTGGGGCAGGCG----CCAAGGAGCCGTGCTGCTCCCTCATCTTCGGGCTCGTCGACCTGGACG
CCGCCGCCTGCTTCTTCCGCGCCATCAATGCCAACGTCCTCGGCGTCGACCTCTACGTCGACGTCGACCTCACGCTGCTG
CCGAACCACTGCGGCTGCAAGGTGCCCAACAGCCCAAGGGCTCCCGATGCGCCTGATCGATTGAAGGATCAAAGACATGG
AGAAAGAACGGCGAACAGGCGGGGAGAAGGAGCACGAGCTTGGCGATGTTGAGACCCATCGGCATCATGCATCAAAGGCA
GGGAGAAAGAACGGCGAAGGAAATGTAGCGAGAGCCGTCAAAACCATACTCCC-GCACGAGCGCTTGACCAG---CTCCC
CCGTTCTCCAAAAGCTGACCGCTGTCTCGCTCGCACTGCCTCCTCAGGACCAGTCAAACGCCTCTCTGT-----------
-------TTCAGCCGCTACCACCCGCTCTTCTCAGCTCCTTAGCACCACACGATCGAGCCCGGTCCATCTTGCACCCCAA
CCTGCGAATAGTTCTCACCTCCACAATCTCAGTCTCGTCCT---GTATATAAAGGCCTCCAGAACGCTAGCAGAAGACAC
AC--ACAGACACAACCTGAGGCTAGAGCTTTACTGCTTTCCCGCGAGGAAA----AGTCGTCAGCAGATCAAGAACAGGG
CCAGCCACACGAGGAGATA--------GATAGATAAACTGATCAGGTGAATTGCGCCGGCAGACAACACCTGCTC-----
GACCAAGCAAGGTTCATGGCCATGGGCAACAATGGCGTCAAGGTCACCTACATCGAGACGCAGTTCGTCACCTCCGACGC
CGCGAGCTTCAAGTCCCTCGTGCAGCGCCTCACGGGCAAGTCCGGCGCCGAAGCCGCCGACGCGCGCCTGCCCCACCGGC
CGCGCCCCTGCCGCGCCGCCGCAGCCGAGAGGACCAGCGGTGTTACTGGAGCGCCGACCTATTTCATGTCCACCACTGCG
GGCTCGGCTGTTAGTGCAGCTGCGGAGGACGTGCAGATAGAGAAATTCGCTGCCAACGCCGGCGATTACTCGGAGCTGGA
GGGACTTTGGGATTACTCGGAGCTGTTCTGCGCAGCCGAACGGTGCCATGGCGGTAGTTACAGTGATCTCCTCTATTGAA
GTGTAAATGTTCTTTTTA-----GGATATTGAAGTGTAAATGTTTTTGGTTTTGACTCTCTAGTTACGAGGCAAATTCAA
GTCATTTTTTGATGCTATGTCCTTCTGTGTTCTGCCTATTGCTGTTAATTCACTTGGGATTTGTAAATGTACAAAATGTT
GAAGTAAACAACGGGAGCATTTACTTTGTCATCATTTGGTTTGTAGTCAATAGTCACGTACGTTCACTTGCTTTGTTTTG
TCATCATTTGCATTGCTAGCTTAGTTTGTTGTATTATCATGAGTAATTCTTGTTTTATGGATAAGGTTGGTGGCCACTTT
GTAGCAGAAAACCAAGAATAAGCTATTAACTTTAAGCCATTGTTGGTTGAAATTGAATGGCAAACCAAAATGGCAACAAT
GTGTCGATGACCTCAAGAACAACACCAAGAGGTTGAAGAAAAATGAGGCTCAAGCTCCCAAAAACCATTGGATTGGATGA
CAAAGAGGAAGAAATTGTAAGGGAGGGGGTACAAGACACCATGCTAATGAGGAACTGCCAAGTGATGAGAAACAAGTGGA
GGGGAGGGTCGCGCGCATGACACCGCGTAACTCAAATGTCTGCCACTTGGACAGATATTATTTTCCCGATGGAGGGGCAA
GAAAGAGGAGCACGTACAGAGGATGGATTGGGACAAGGATATAGTCAACAAGAAGTTATAAATTAAGAGGAAGAAGATAG
ACTTGGAGAAGCAAGGGGCATGTGTCAAATGGGAGCTCCAGGAGGCCCAAACTTTTGGAACAATAGATCTTGAGAAGTAG
AGATTGCAACTTGCTCCGTACACGAAGGGTGCGTTTGGATTGTAACCAAAGCTGACCCTACCAAAATATAGTGTCGCCCT
TAAATTTTGGTAGTCGTTTGGATTGTTGCCAACGAATTGGCTCGCAAGTGGATACCCCCGCATGTTGTTGCCGGAATAGG
ATGTGGTTATTTCTATAGATTTGGAAGTATGAAACTTTAGTTTT
>chr4A_1
GCTTACAAATGTCCTCCGAAGGAGGCCATTCGCGCCTCATGCTCTTTTCGCTTCCTCTTCTCGTCATCGGACGACTGCAT
CCTCTGTTCGTACCTCTGCCGGCGTAGGTCGTGCATGACGGGGTCGCC----GGCAAGTTGTGGTGCCTTTGTGCCCCCC
TGCCCGGCCGGCCGAGACGTGCAACGGCCACCCGTGCCCTTCGCCGCCGGAG-------GCGTGCTGAACGGGCTGATCC
ACGTGGTGCTGGGGC--------AGGCGCCTCCCAAGGAGCCGTTCTGCTCCCTCATCCTCGTGCTCGTCGACCTGGACG
CCGCCGCCTTCATCTTCCTCGCCATCAGTGCCCACGTCCTCGGCGTCAACCTCTACGTCGACGTCGACCTCACGCTGCTG
CCGAGCTGCTGCGGCCGCAAGGC--------GCCCAAGGGCTCCTGATGCGCCTGATCGATCGACGGACCAAAGACAGGG
GGAAAGAACGGCGAACAGGCGGGGCGAACGAGCACGAGCTTGGCGATGTTGAGACCCATCGGCATCATGCATCGAAGGCA
GGGAGAAAGAACGGCGAAGCAAATGTAACGAGAGCCGTCAAAACCATACTCCCCGCACGAGCGCTTGACCAG---CTCTC
CCGTTCTCCAAAAGCTGACCGCTGTCTCGCTCGCACTGCCTCCTCAGGACCAGTCAAACGCCTACTCTCTCTC-------
---TGCATTCAGCCGCTACCACCCGCTCTTCTCAACTCTCTAGCACCACACGATCGAGCCCGGTCCATCTTGCACCCCAA
CCTGCGAATAGTTCTCACCTCCAGAATCTCAGTCTCGTCCT---GTATATAAAGGCCTCCATAACGCTAGCAAAAGACGC
ACAAACAGACACAACCTGAGGCCAGAGCCTTACTGCTTTTCGCCGAGGAAAAGTTAGTCGTCAGCAAATCAAGAAGAGAG
CCAGCCGCACGAGGAGATAGATAGATAGATAGATAAACTGATCAAGTGAAGTGCGCCGGCACACAACACCTGCTCTGCTC
GATCAAGCAAGGCTCATGGCCATGGGCAACAATGGCGTCAAGATCACCTACATCGAGACGCAGTTCGTCACCTCCGACGC
CGCGAGCTTCAAGTCCCTCGTGCAGCGCCTCACGGGCAAGTCC---GCCGAAGCCGCCGCCACGCGCCCGCTCCACCGGC
CGCGCCCCTGCCGCGCCCCCGCAGCCGAGAGGGCGAGCGCTGTCACTGGAGCACCGAGCTATTTCACGTCCACCACTGCG
GTCTCGGTTGTTAGTGCAGCTGCGGACGACGTGCGGACAGCGGCGTTCGCTGCCAACGACGGCGATTACCCGGAGCTGGA
GGGACTTTGGGATTACTCGGAGCTGTTCTGCGCAGCCGAACGGTGCCATGGCGGTAGTTACAGTGATCTCCTCTATTGAA
GTGTAAATGTT-TTTTTA-----GGATATTGAAGTGTAAATGTTTTTGGTTTTGACTCTCTGGTTACGAGGCAGATTCAA
GTCATTTTTTGATGTTATGTCCTTCTGTGTTCTGCCTATTGCTGTTAATTCACTTGGGATTTGTAAATGTACAAAATGTT
GAAGTAAACAACGGGAGCATTTGCTTTG----------------------------------------------------
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>chr4D_1
GCTTACAAATCTCCTCCGAAGGAGGCCACTCGCGCCTCATGCTCTTTTCGCTTCCTCTGCTCGTCATCGTACGTCTGCAT
CCTCTGTTCGTACCTCTGCCGGCGTAGGTCGCGCATGACGGGGTCGCT----GGCAAGTTGTGGTGGTTTTGTGCCCCCC
TGCCCGGCCGGCCGAGACGTGCAACGGCCACCCGCGCCCTTCGCCGGCGGAGGCGTGCAGCGTGCTGAACGGGCTGATCC
ACGTGGTGCTGGGGCTGTGGGGCAGGCGCCTCCCAAGGAGCCGTGCTGCTCCCTCATCTTCGGCCTCGTCGACCTCAACG
CCGCCGCCTGCATCTTCCTGGCCATCAGCGCCAACGTCCTCGGCGTCAACCTC------------------ACGCTGCTG
CCGTGCTGCTGCGGCTGCAAGGC--------GCCCAAGGGCTCCCGATGCGTCTGATCGATTGACGGATCAAAGACAGGG
AGAAAGTACGGCGAACAAGCGGGGAGAAGGAGCACGAGCTTGGCGATGTTGAGACCCATCAGCATCATGCATCGAAGGCA
GGGAGAAAGAACGGCGAAGCAAATGTAACGAGAGGCGTCAAAACCATACT-CCCGCACGAGCGCTTGACCAACTCCTCTC
CCGTTCTCCAAAAGCTGACCGCTGTCTCGCTCACACTGCCTCCTCAGGACCAGTCAAACGCCTACTCTCTCTCTCTCTCT
CTCTGCATTCAGCCGCTACCACCCGCTCTTCTCAACTCTTTAGCGCCACACGATCGAGCCCGGTCCATCTTGCACCCCAA
CCTGAGAATAGTTCTCACCTCCAGAATCTCAGTCTCGTCCTCCTGTATATAAAGGCCTCCAGAACGCTAGCAAAAGACGC
ACACACAGACACAACCTGAGGCTAGAGCT-TACTGCTTTCCCGCGAGGAAA----AGTCGTCAGTCGATCAAGAAGAGAG
CCAGCCGCACGAGGAGATAC------------------------AGTGAAGTGCGCCGGCACACAGCACCTGCTCTGCTC
GATCAAGCAAGGTTCATGGCCATGGGCAACAATGGCGTCAAGGTCACCTACATCGAGACGCAGTTCGTCACCTCCGACGC
CGCGAGCTTCAAGTCCCTCGTACAGCGCCTCACGGGCAAGTCCGGCGCCGAAGCCGC--------------------GGC
CGCGCCCCTGCCGCGCTGCCGCAGCCGAGAAGACGAGCGCTGTTACTGGAGCGCCGAGCTATTTCACGTCCACCACCGCG
GGCTCGGTC---AGTGCAGCTGCGGACCACGTGCCGGCAGCGGCGTTCGCTGCCAACCCCGGCGATTACTCGGAGCTGGA
GGGACTTTGGGATTACTCGGAGCTGTTCTGCGCAGCCGAACGGTGCCATGGCGACAGTTACAGTGATCTCCTCTATTGAA
GTGTAAATGTT-TTTTTTTGTGTGGATATTGAAGTGTAAATATTTCTGGTTTTGACTCT--AGTAACGAGGTAAATTCCA
GTCATTTTTGAT--------------------------------------------------------------------
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>SNPs
--------------------------------------------------S-----------------S-----------
------------------------------------------------SSSS----------------------------
------------------------S----------------S-S------------------------------------
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-----------S------S--------S-------------------S--------------------------------
----S-SS--------------SSSSSSSSS---------------------------------S------------S--
-------------------------------------------------------------------------S------
-------------------S-------S--------------------------------------------------S-
---------------------------------------------------------------SSSSSS-----------
----------------------------------S---S-----------------------------------------
-----------------------S------------------------------------------------S-----S-
---------------------------------------------------------------------------S--S-
------S-------------------------------------S-----S----------S------------------
--S-----------------------------------------------------------------------------
-----------------------------------------------------------S-S------S--S--------
----------------------------------S----S-----------------S--------S-------------
-------S------------------S-------S--S--S-SSS-----------------------------------
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-----------S--------------------------------------------------------------------
--------------S-----------------------------------------------------------------
----------------------S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_708
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------------------------------------------------ACCAGTCAAACGCCTCTCTG------------
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>reverse_1989
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--------------------------------------------------------------------GAAACAAGTGGA
GGGGAGGG------------------------------------------------------------------------
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