>input_sequence_81886
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------ATGAAAACTGTT
TCTGTATCATCAAAAGAAGATGCATCTATGACAGAAACCGGCAACGATGACACGGAACCTCTACAGCAACCAGAGGTCAT
GATTTATGGTAATACTCTAAATGTTATACAATACT--TGCATTCAAAATA-----A-----GATCTTTATGTACGAATAA
CCATCGTT-GTGCGTAGACATCCCCTCGTC---AATGTTTCCAAGCATCAAAGAAGCAGATGCCACAACAGAAACAACCT
ACAACGACAATCACAGCAAGGTGGCTTTGTGGCCAGACATCCCCTCTTCAATGTGTTCAACAATCAAAGAAGTAAATGCA
CGAATACAATCATTCTATAACGATGATCACGGTAAGGCTATCAATATCATATTTACTTTTATGCAATAG-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
>chr3D_1_TraesCS3D01G197900
TACATCAGCATATAGATACGGGAAAGTGAACAGTTGGTTTCACAATATTAGATATCCAGTCCATGAAGGCTCCAACTGAA
TGAATGCATATTTAGAATACTGTTTATTACTTATAATCACTTCAAGGATTTTTTTGATATCTATTCCAAGGCATGAACTG
CTTAATTTCACTAACTGAAATGCAAATCAAATAATTCTCTTTTGAAGAAAACAATAGAAATGATAAGAAGCTTAAAATTT
CCGCAGAGTTCACCAAGAAGATATCACTAATATAATTCTAAAATGGACAGAACAACACAAAATAAGAAAGGACCAAGGAC
CCTTGA--CTCTGTAGCAGTTTTCTTTCATGTAACTTGATAAATAATTATTTCCACCATTGTCTAGAGCTCGAGACCTGT
GCTGATGCATATATCAATTTTAATTAGTTTATT-CTTTTTATTAAATAACACATTAACCACTGTTGCTGATGCATATATC
GATTCCAATTAGTTTCTCATTTCTATTAAATAACATATTCTTACACGTTCCAAAACTACCGTGCAGGAAAGCCAATTGAG
TTTCAATCTCCGTTAATGGATGCCAAGGAACAAAGAAGAAAAAGAGTTAGAGAGCGATATGCACAGATGAGTAATGAAGA
AAAGCAGGAAAAACAAAAAAACAACGTGAAGCTTATCAGAGAAACAAGACAAAAATATGCGCACAGAAAAGGCAGAAATA
TGCAAATATGCAGACAGAAGCAGAGATGACCAATGAAGAAAAGCAGAGAAAGCAGGACAAAC---------GCCGTGAAG
CCTATCAGCAAAACAAAACCAAAAAAG-GGCACAAAATAGGGAGATATATGCAAACATGCAACCAGAACAAAAGAAAGCT
AGAATACAACAAATTACAGCTAGC--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------CAAGAGTTGAAGCGCAGCACACCAAGCAAAGA
TTCAATTAAGATGGAGAAT-------------------------------------------------------------
----------ACCCGGAGAAAGGCAAACATTGCTACACCGCCGTAGCAAAGAATTCTCGACAAGGCGGATGAAAACTGTT
TCTGTATCATCAAAAGAAGATGCATCTATGACAGAAACCGGCAACGATGACACGGAACCTCTACAGCAACCAGAGGTCAT
GATTTATGGTAATACTCTAAATGTTATACAATACT--TGCATTCAAAATA-----A-----GATCTTTATGTACGAATAA
CCATCGTT-GTGCGTAGACATCCCCTCGTC---AATGTTTCCAAGCATCAAAGAAGCAGATGCCACAACAGAAACAACCT
ACAACGACAATCACAGCAAGGTGGCTTTGTGGCCAGACATCCCCTCTTCAATGTGTTCAACAATCAAAGAAGTAAATGCA
CGAATACAATCATTCTATAACGATGATCACGGTAAGGCTATCAATATCATATTTACTTTTATGCAATAGACAAATACTCC
CTCCGTTTCTAAATATAAGTCTTTGTAGAGATTTCACTATGAACCACATACGGATGTATATAGATGCATTTTAGAAGTAG
ATTCACTCATTTTGCTCCGTATGTAGTCCATAGTGAAACCTCTACAAAGACTTATATTTAGGAACGGAGGGAGTAATATA
T-TAAA-------AAAATACTACACAGATAATG--ATGAAGTCATATGTGAGAAAGACAAAACCATCAAAGAAGTAGATG
GACCAATACAATCAATCTACAACGATGATCACGGTAAGGTTATCAATTTCATATATGAACATTATGCAATACAAAGAAAT
AT---A-AACA-ATAAAAAATTACAACATAGGTAATGATGAAGTCATATTTGAAGAAGATACAAATGAGGATGAATACAT
GTTCTTTGGTGAAGGTATGCTCAATACAATCTTAA-TATTTTTGCATCATTATATTGCCCCTTCACT--AATTTTTGTAT
GCTACAAATCAAATCAGAAGAGAATGAGGAAGTGGAAATTGAAATCAAGGAAGACGAGGAACTTCACAATCCTGATTCGT
ATGATTTTGTCTACAGCAACATACCAAAGAACACACACGTGT--AAAACGGAAGAAAATTGCAGGTTCTGCAACGC-AAC
AAAATTCAAGTATGAATCTAAAGGGTTATGCTGCAAGAAAGGGCAAATAAGACTAGCCAATCCAGATACACCACCTGAAC
TCATGAGACTTTGGACAAGCAACAATTCTGAAGCAAGGCATTTTCGGAACAATATAAGATTTTTCAATGGACACTTCTCA
TTTACTACTCTATTGTAACGCCCCAAGACCGACGCTTCAGAAGATTTCCTTATTTTCGTGATCGCCGTGTGTTTCTTTTG
TGCTTGCTCTTTTATTTTTGCATTGCATCATGTCATCATGCCATCATGTCATTTAATTTTTAAAACCCACCTAATAAATT
GCATGGATCTTCGATCCATTTAAATCGAGGGAATTCACATGGTGATTTCT
>chr6D_1
TACATCAGCATATAGATACGGGAAAGTGAACAGTCGGTTTCACAATATTAGATATCCAGTCCATGAAGGCTCCAACTGAA
TGAATGCATATTTAGAATACTGTTTATTACTTATAATCACTTCAAGGA-TTTTTTGATATCTATTCCAAGGCATGAACTG
CTTAATTTCACTAACTGAAATGCAAATCAAATAATTCTCTTTTGAAGAAAACAATAGAAACGATAAGAAGCTTAAAATTT
CCGCAGAGTTCACCAAGAAGATATCACTAATATAATTCTAAAATGAACAGAACAACACAAAATAAGAAAGGACCAAGGAC
CCTTGACTCTCTGTAGCAGTTTTCTTTCATGTAACTTGATAAATAATTATTTCCACCATTTTCTAGAGCTCGAGACCTGT
GCTGATGCATATATCAATTTTAATTAGTTTATT-CTTTTTATTAAATAACACATTAACCACTGTTGCTGATGCATATATC
GATTCCAATTAGTTTCTCATTTCTATTAAATAACATATTCTTACACATTCCAAAACTACCGTGCAGGAAAGCCAATTGAG
TTTCAATCTCCGTTAATGGATGCCAAGGAACAAAGAAGAAAAAGAGTTAGAGAGCGATATGCACAGATGAGTAATGAAGA
AAAGCAGGAAAAACAAAAAAACAACGTGAAGCTTATCAGAGAAACAAGACAAAAATATGCGCACAGAAAAGGCAGAAATA
TGCAAATATGCAGACAGAAGCAGAGATGACCAATGAAGAAAAGCAGAGAAAGCAGGACAAAC---------GCCGTGAAG
CCTATCAGCAAAACAAAACCAAAAAAG-GGCACAAAATAGGGAGCTATATGCAAACATGCAACCAGAACAAAAGAAAGCT
AGAATACAACAAATTACAGCTAGC--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------CAAGAGTTGAAGCGCAGCACACCAAGCAAAGA
TTCAATTAAGATGGAGAAT-------------------------------------------------------------
----------ACCTGGAGAAAGGCAAACATTGCTACACCGCCGTAGCAAAGAATTCTCGACAAGGCGGATGAAAACTGTT
TCTGTATCATCAAAAGAAGATGCATCTATGACAGAAACCGGCAACGATGACACGGAACCTCTACAGCAACCAGAGGTCAT
GATTTATGGTAATACTCTAAATGTTATACAATACT--TGCATTCAAAATA-----A-----GATCTTTATGTACGAATAA
CCATCGTT-GTGCGTAGACATCCCCTCGTC---AATGTTTCCAAGCATCAAAGAAGCAGATGCCACAACAGAAACAACCT
ACAACGACAATCACAGCAAGGTGGCTTTGTGGCCAGACATCCCCTCGTCAATGTGTTCAACAATCAAAGAAGTAAATGCA
CGAATACAATCATTCTATAACGATGATCACGGTAAGGCTATCAATATCATATTTACTTTTATGCAATAGACAAA------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------TAATATA
T-TAAA-------AAAATACTACACAGATAATG--ATGAAGTCATATGTGAGAAAGACAAAACCATCAAAGAAGTAGATG
GACCAAGACAATCAATCTACAACGATGATCACGGTAAGGTTATCAATTTCATATATGAACATTATGCAATACAAAGAAAT
AT---A-AACA-ATAAAAAATTACAACATAGGTAATGATGAAGTCATATTTGAAGAAGATACAAATGAGGATGAATACAT
GTTCTTTGGTGAAGGTATGCTCAATACAATCTTAA-TATTTTTGCATCATTATATTGCCCCTTCACT--AATTTTTGTAT
GCTACAAATCAAATCAGAAGAGGATGAGGAAGTGGAAATTGAAATCAAGGAAGACGAGGAACTTCACAATCCTGATCCGT
ATGATTTTGTCTACAGCAACATACCAAAGAACACACACGTGT--AAAACGGAAGAAAATTGCAGGTTCTGCAAAGC-AAC
AAAATTCAAGTATGAATCTAAAGGGTTATGCTGCAAGAAAGGGCAAATAAGACTAGCCAATCCAGATACACCACCTGAAC
TCATGAGACTTTGGACAAGCAACGATTCTGAAGCAAGGCATTTTCGGAACAATATAAGATTTTTCAATGGACACTTCTCA
TTTACTACTCTAT-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
>chr3D_109
--------------------------------------------------------------------------------
----------------------------ACTAATAATCACTTCAAGGA-TTATTTGATATCTATTCCAAGGCATGAACTG
CTTAATTTTGCTAACTGAAATGCAAATCAAATAATTCTCTTTTTAAGAAAACAGTAGAAATGAT---AAGCTTAAAATTT
CCGCAGAGTTCACCAAGAAGATATCACTAATATAATTCTAAAATGGACAGAACAACACAAAATAAGAAAGGACCAAGGAC
CCTTGACTCTCTGTAGCAGTTTTCTTTCCTGTAACTTGATAAATAATTCTTTCCACCATTTTCTAGAGCTCAAGACCTAT
GCTGATGCATATATCAATTTTAATTAGTTTATTCCTTTTTATTAAATAACACATTAACCACTGTTGCTGATGCATATATC
GATTCCAATTAGTTTCTCATTTCTATTAAATAACATACTCTTACACATTCCAAAACTACCGTGCAGGAAAGCCAATTGAG
TTTCAATCTTTGTTAGTGGATGCCAAGGAACAAAGAAG--AAAGAGTTAGAGAGCGATATGCACAGATGAGTAATGAAGA
AAAGCAGGAAAAACAAAAAAACAACGTGAAGCTTATCAGAGAAACAAGACAAAAATATGCACACAGAAAAGGCAGAAATA
TGCAAATATGCAGACAGAAGCAGAGATGACCAATGAAGAAAAGCAGAGAAAGCAGGACAAGCTGAACAAATGCCGTGAAG
CCTATCAGCAAAACAAAACCAAAAAAAAGGCACAAAATAGGGAGATATATGCAAACATGCAACCAGAACAAAAGAAAGCT
AGAATACAACAAATTACAGCTAGCCAAGAGTTGAAGCGCAGTATGTTGAGATGGATGTGTGGCCACACGAGGAAGGATCG
AGTCCAGAATGATGATATACGAGATAGAGTTGGGGTAGCACCAATTGAGGAGAAGCTTGTCCAACATCGTCTGAGATGGT
TTGGGCATATTCAGCGCAGGCCTCCAGATGCTCCAGTGCATAGCGGACGGCTAAAGCGTGCGGAGAATGTCAAGAGAGGG
CGGGGTCGACCGAATTTGACATGGGAGGAGTCCGTTAAGAGAGACCTGAAGGATTGGAGTATCACCAAAGAGCTAGCTAT
AGACAGGGGTGCGTGGAAGCTTGCTATCCATGTGCCAGAGCCATGAGTTGGTTGCGAGATCTTATGAGTTTCACCTCTAG
CCTACCCCAACTTGTTTGGGACTAAAGGCTTTGTTATTGTTGTTGTTGCAAGAGTTGAAGCGCAGCACACCAAGCAAAGA
TTCAATTGCGATGGAGAATCCTGCATATGTTGCAACTCAAAAGGAAGTTAGTACATCCAAATTTAGTGAAAAACACGTAA
AGCGTGTGACACCCGGAGAAAGGCAAACATTGCTACGCCGCTGTAACAAAGAATTCTCGACAAGGCGGATGAAAACTGTT
TCTGTATCATCAAAAGAAGAAGCATCTATGACAGAAACCGGCAACGATGGCACGGAACCTCTACAGCAACCAGAGGTCAT
GATTTATGGTAATACTCTAAATTTTATACAATACT--TGCATTCAAAATA-----A-----CATCTTTATGTACAAATAA
CCATCGTT-GTGCGTAGACATCCCCTCGTC---AATGTTTCCAAGCATCAAAGAAGCAGATGCCACAACAGAAACAACCT
ACAACGACAATCACAGCAAGGTGGCTTTGTGGCCAGACATCCCCTCTTCAATGTGTTCAACAATCAAAGAAGTAAATGCA
CGAATACAATCATTCTATAACGATGATCACGGTAAGGCTATCAATATCATATTTACTTTTATGCAATAGACAGA------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------TAATATA
T-TCAA-------AAAATACTACACAGATAATG--ATGAAGTGATATGTGAGAAAGACAAAACCATCAAAGAAGTAGATG
GACCAATACAATCAATCTACAACGATGATCACGGTAAGGTTATCAATTTCATATATGTT-CTTATGCAATACAAAGAAAT
AT---A-AACA-ATAAAAAATTACAACATAGGTAATGATGAAGTCATATTTGAAGAAGATACAAACGAGGATGAATACAT
GTTCTTTGGTGAAGGTATGCTCAATACAATCTTAA-TATTTTTGCATCATTATATTGCCCCTTCACT--AATTTTTGTAT
GCTACAAATCAAATCAGAAGAGGATGAGGAAGTGGAAATTGAAATCAAGGAAGACGAGGAACTTCACAATCCTGATCCGT
ATGATTTTGTCTACAGCAACATACCAAAGAACACACACGTGTTCAAAACGGAAGAAAATTGCAGGTTCTGCAAAGC-AAC
AAAATTCAAGTATGAATCTAAAAGGTTATGCTGCAAAAAAGGGCAGATAAGACTAGCCAATCCAGATACACCACCTGAAC
TCATGAGACTTTGGACAAGCAACGATTCTGAAGGAAGGCATTTTCGGAACAATATAAGATTTTTCAATGGACACTTCTCA
TTTACTACTCTAT-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
>chr6A_830
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------AGAAATATGCAGCTATGCAACCAGAACAAAAGAAAGCT
AGAATAGAAAAAATTATAGTTAACCGTGAATT------------------------------------------------
-------------------------------------------------GAGAAGCTT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------CAAAGA
TTCAATTGCGATGGAGAACTCTGCATATATCGCAACCGAATAGGAAGTTGGTACTTCTACCTTTCCTGTCAAACACAAAA
AGCATGTGACGCCAGGAGAAAGACAAACATTGCTACACCGTCGTAACAAAGAATTCATGACAAGATGGATGAAATTTTTT
TCTGTATCACCAGAAGAAGATGCATCCATAACGGAAACAGGCAGTGATGACATAGAACCTCTACAGCAACCAAAAGTCAT
GATTTACGGTAATGCTCTAAATTTAATATAGTGTACTCGCACTAAAAATAGATATA-----CATATGTCTGTACAACTAA
CCATCTTTTGTGGACAGACATACCCTTGTC---AATGTTTCCAAGCATCAAAGAAGCGGATGCCCAAACACCAACATTCA
ACAATAACGATCACAGTAAGGTAGCTTTGTGGCCAGACATCCCCTCTTCAATGTTGCCAACAATCAAAGAAGTAAATGCA
CGAATACAGTCATTCTACAATGATGATCACGGTAAGA-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------TATCAATTGCATATATACT-ATTATGAAATACAAAAAT--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
>chr7D_947
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------GGAAAAAGGCAAACATCGCTACACTATCGTAATGAAGAATTCACGACAAGACAGATGAAAATGGTT
TCTGTAACATCACAAGAAGACGGATCCATGCCGGCAACCAGCAAAGATGACATAGGACCTCTAGAGGAGTCAGAAGTCGT
GATTTATGGTAATACTCTTAATTTTATATAATATC--CGCATTCCAAATA-----AATATACATTTGTCTATACAACTAA
CCATCTTTTGTGGATAGACAACCCTTCTTC---AATGTTTCCATGCACCACAGAAGTGGATGCACCAACACAAACACTCT
ACAGTGATGATAATAGTAAGGTGGCTTTGTGGCCAGACATCCCCTCTTCATTGTTTCCAACAATCAGAGAAGTGGATGCA
CGAATACAATCATTCTACAATGAGGATCACGGTAGGTTTATAAATTTCATATATACTTTTATGCAATACTAAAA------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------TTATATA
TAATAATAGTCAGAACTTACTACACAGGTAATA--ATGAAGTCATATGTGAGCAAGAAGCAACCATCAAAGAAGTAGATG
CACCAACACAATCAATCTACCATCAAGATCATGGTAAGGTTACCAATTTCATATATATT-CTTATGCAAGTCAAAGAAAA
ACAT-A-TATA-ATAAAAGTTTACTACATAGGTAATGATGAAGTCATATTTGAAGAAGACACAGACGAGGAAGAATACAT
GTTCCCTGGTGAAGGTATGCTCAATACAATTTAAC-CATATTTGCATCATTATATTACTCCATTACT--AATTTCTTGAT
GCGATAAATCAAACCAGAATGGGATAGAGAAGTGGAAATCAAAACTGGAGAAGACCAGGAATTTTACAACCTTGATCAGT
ATGATTCCGTCTATAGCAACATACCAAAGATCACACACATGCTCAAAATGGTACCAAATTGCAGCTTCTGTAATGC-AAA
AAAAATTATGTATGAATCGAAGGGGTTATGCTGCAATAAAGGACAAATAAGACTAGCCAATCCAGATACACCACCTGAAC
TCATGAGACTTTGGACAAGCAACGACTCTAATGCAAGACATTTTCGAAACAACATAAGATTTTTCAATGGACACTTCTCA
TTTACTAGTCTAT-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
>chr5A_1018
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----ATCATCACAAGAAGATAGATCCATGTCGGAAAATGACAACGATGACAACGAACCTCCCGAACAACCAGAAGTCAC
GATTAATGGTAAAAATCTAAAATTTATACAATACTCTCGCATTCCAAAAA-----TATATGAAACCGCATATGTAACTAA
CCATCTTTTGTGGACAGACATCCCCCTCTCTATAATGTTTCCATCCATTAAAGAAGCGGATGCCCAAACACAAACAGCCT
ACAACGACGATCACAGTAAGGTGGCTTTTTGGCCAGGCATCCCCACTTCAATGTGTCCAACAATCAAAGAAGTAAATGCA
CGAATACAATCATTCTACAATAATGGTCACGGTAAGGTTATCAATTTCATATTTACTTTTATGCAATACAAAAA------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------TTATATA
T-TAAA-------AAATTACTAAACAGGTGTGACTATGAAGGCATATGTGAGCAAGACAAAACCATCAAAGAAGTAGATG
CACCAAAACAATCAATCTACAACGATGATCACGGTAAGGTTATCAATTTCAAATATGTT-CTTATGCAATACAAAGAAAT
ATAT-A-AACA-ATAAAATTTTACAACACAGATAATGAT--AGTCATATTTGAAGAAGACACAAACGAGGATGAATACAT
GTTCTTTGGTGAAGGTATGCTCAATACAGTTTTAAGTATATTTGCATCATTATATTACCC-TGTACT--AATTTCTGATT
GCTACAAATCAAAGCAGAATGGGATGGAAAAGTGGAAATTGAAACCAGAGAAGACGAGGAATTTCACAACCCTGATCCGT
ATGATATCGTCTACAGCAACATACCAAAGAACACACACATGTTCAGAACGGAAAAAAATTGCAAGTTCTGTAATGC-AAC
GAAATTGAAGTATGAATCTAAGGGGTTATGTTGCAGAAAAGGGAAGATAAGACTAGCCAATCCAGATACAGCACCTGAAC
TTATGAGACTTTGGACAAGCAACGACTCTGATGCAAGACATTTTCGGAACAATATAAGATTTTTCAATGGACACTTCTCA
TTCACTACTCTAT-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
>chr7D_1018
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----ATCATCACAAGAAGATAGATCCATGTTGGAAAATGACAATGATGACAAAGAACCTCTGGAACAACCAGAAGTCAT
GATTAATGGTAAAA-TCTAAAATTTATACAATACTCTCGCATTCCAAAAA-----TATATGCAACCATTTATGCAACTAA
CCATCTTTTGTGGACAGACACCCCCCTCTCTATAATGTTTCCATCCATTAGAGAAGCGGATTCCCCAACACAAACAACCT
ACAACGACGATCACAGTAAGGTGGCTTTTTGGCCAGACGTCCCCACTTCAATGTGTCCAACAATCAAAGAAGTAAATGCA
CGAATACAATCATTCTACCATGATGATCACGGTAAGGTTATCAATTTCATATTTAATTTTATGCAATACAAAAA------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------TTCTATA
T-TCAA-------AAATTACTAAACAGGTAACG--ATGAAGGCATATGTAAGCAAGAGAAAACCATCAAAGAAGTAGATG
CACCAAAACAATCAATCTACAACGATAATCACGGTAAGGTTATCAATTTCATATATTTT-CTTATGTAATACAAAGAAAT
ATAT-A-AACA-ATAAAATTTTACAACATAGATAATGATAAAGTCATATTTGAAGAAGAAACAAACAAGGATGAATACAT
GTTCTTTGGTGAAGGTATGCTCAATACAGTTTAAA-TATAGTTGCATCATTATGTCA-CCTTTTACT--AATTTCTGATT
GCTACAAATCAAAGCAAAATGGGATGAAGAAGTGGGAACTGAAACCAAAGAAGACGGTGAATTTCACAACCCTGATCCGT
ATGATATCGTCTATAGCAACATACCAAAGAACACACACGTGTTCAAAACGGAACAAAATTGCAAGTTATGCAATGC-AAC
GAAATTCAAGAATGAATCTAAGGGGTCATGCTGCAGAAAAGGGCAGATAAGACTAGCCAATCTAGACACATCACCTGAAC
TTATGATACTTTGGATAAGCAACGACTCTGATGCAAGACATTTTTGGAACAATATAAGATTTTTCAATGGACACTTCTCA
TTCACTACTC----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
>chr6A_1552
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------ATATA
TATAAT-------TAATTACTACACAGGTAAGG--ATGAGATTATATGTGAGCATGATGCAACCATGAAAGAAGTAGATA
CACCAACACAATCAATCAATAATCACGATCAAGGTAAGGTCATCAATTCCATATATGTT-CTTATGAAATCCAAAGAAAT
ATATTA-TACA-ATAAAAAATTGCAACACAGGTAATAATGAAGTCATATTTGAAGAGGACATAAATGAGGACGAATACAT
GTTCTCTGGTCAAGGTATGCTCAATAGAATTTAAA-TATATTTTAATCATTATATTGCTTTTGTACT--AACTTTT--AT
GCTACAAACCAAACTAGAATGGGACAGAGAAGTGGAAATTGAAATCAAATAAGGCGAGGAAATACACAACCCTGATCCTT
ATGATTTCGTCTATAGCAACATACCCAAAAAAACAC--GTGCTCAAAACGGAAGGAAATTGCAGATTCTGCCATGC-AAA
AAAATTCAAGTATGAAACTAAGGGATTATGCCGCAGAAAAGGACAGATAAGACTAGCCAATGCAGATACACCACCTGAAC
TCATGAGACTTCGGACAAGCAACGACTCTGACGCAAGACATTTTCGAAACAATATAAGATTTTTCAATGGCCACTTCTCG
TTTACTACTCTAT-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
>chr2A_1560
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----AA-------AAAATTCTACACAACAAATA--ATAAAGTCATGTGTGAGAAAGACACAGCCATCAAAGAAGCAGACG
CACCAACACAATCAATCCACAATGAGGATCATGGTAAGGTTATCAATTTCATATATATT-GTTATGCAGTACAGAGAAAT
ATAATA-TATATATATAAGATTACAACACAGGTAATGACGAAATCATATTTGAAGAAGATACAAACGAGGACGGACACAT
GTTCTCTGGTCAAGGTATGCCCAATACAATTTAAA-TAGATTCGAATCATTATATTTCTCCTTCACTAAAAATTTT--AT
GCTACAAACCATACTAGAATGGGGCAGAGAAGTGGAAATTGAAATCAAAGAAGACGAAGAAATTCACAAGTCTGATCCAT
ATGATTTTGTCTACAGTAACATACCAAAAAACACACATGTGCTCAAACCAGAAGAGAATTGCAGATTATGTCATGC-AAA
AAAATTCAAGTATGAAACTAAGGGGTTATGCTGCAGAAAAGGACAGATAAGACTGGCCAATCCAGATACAACACCTGAAC
TCATGAGACTTTGGACAAGCAACGACTCTGATGCAAGACATTTTCGGCAAAATATAAGATTTTTCAATGGACACTTCTCA
TTTACTACTCTAT-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
>chr2A_1560
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----AA-------AAAATTCTACACAACAAATA--ATAAAGTCATGTGTGAGAAAGACACAGACATCAAAGAAGCAGACG
CACCAACACAATCAATCCACAATGAGGATCATGGTAAGGTTATCAATTTCATATATATT-GTTATGAAGTACAGAGAAAT
ATA--A-TATATATATAAGATTACAACACAGGTAATGACGAAATCATATTTGAAGAAGATACAAACGAGGACGAACACAT
GTTCTCTGGTCAAGGTATGCCCAATACAATTTAAA-TAGATTCGAATCATTATATTTCTCCTTTACTAAAAATTTT--AT
GCTACAAACCATACTAGAATGGGGCAGAGAAGTGGAAATTGAAATCAAAGAAGACGAAGAAATTCACAAGTCTGATCCAT
ATGATTTTGTCTACAGTAACATACCAAAAAACACACATGTGCTCAAACCGGAAGAGAATTGCAGATTATGTCATGC-AAA
AAAATTCAAGTATGAAACTAAGGGGTTATGCTGCAGAAAAGGACAGATAAGACTGGCCAATCCAGATACACCACCTGAAC
TCATGAGACTTTGGACAAGCAACGACTCTGATGCAAGACATTTTCGGCAAAATGTAAGATTTTTCAATGGACACTTCTCA
TTTACTACTCTAT-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
>chr6B_1560
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----AA-------AAAATTCTACACAACAAATA--ATAAAGTCATGTGTGAGAAAGACACAACCATCAAAGAAGCAGACA
CACAAACACAATCAATCCACAACAAGGACCATGGTAAATTTATTAATTTCATATATATT-CTTATGCAGTACAGAGAAAT
ATAT-ATTATATATATAAGATTACAACACAGGTAATGACGAAGTCATGTTTGAAGAAGATACAAACGAGGACGAATACAT
GTTCTGTGGTCAAGGTATGCTCAATACAATTTAAA-TAGATTCAAATCATTATATTTCTCCTTTACTAAAAAAATT--AT
GCTACAAACCATACTAGAATGGGACAGAGAAGTGGAAATTGAAATCAGAGAAGACGAAGAAATTCACAACCCTGATCCGT
ATGATTTTGTCTACAACAACATACCAAAAAACACACATGTGCTCAAACTGGAAGAAAATTGCAGATTATGTCATGGAAAA
AAAATTCAAGTATGAAACAAAGGGGTTATGCTGCAGAAAAGGACAGATAAGACTAGCCAATCCAGATACACCACCTGAAC
TCATGAGACTTTGGACAAGCAACGACTCTGATGCAAGACATTTTCAGCAAAATATAAGATTTTTCAATGGACACTTCTCA
TTTACTACTCTAT-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
>SNPs
----------------------------------S---------------------------------------------
------------------------------------------------S-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------S-------------------
--------------------------------------------------------------------------------
----------------------------------------------S---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------SSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------S-----------------------------------------------------S---
-------------------------------------------------------------------------S------
--------------------------------------------------------------------------------
-----------------------S--------------------------------------------------------
-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_35
-------------AGATACGGGAAAGTGAACAGTT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
>reverse_2013
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------TGCTCCGTATGTAGTCCATAGTG---------------------------------------------
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