>input_sequence_81876
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-------------------------------------------ATGGCGTCATCACACAAGTTCTTCCCGGCCGTCCTCC
TCCTCCTGCTGCTGGTTGTCGCCATGGGTAAGCAACTAGGCACGTTTTATGG-TTATTATCTGCTAATATATTTCTTTCT
GGTGTGTATCAACTCT----ATGCTCATACGAATCAATATGCATGCTACCTAATGATTTATGCTTCAAAATAATGACGGG
CAATCGACGTTTTGTGTTCAGAGGTGGCGCCGGCGCAGGCGGAGGAGCCGAGGGTGTGCGAGACGGATAGCACTCGGTTC
AAGGGGATATGCATGGTTGGCACAAACTGCGCCAACATTTGCCTCACCGAGGGCTTCACCAGCGGCAAGTGCTCTGGCTT
GAAGAGGAAGTGCATTTGCACCAAACCATGCTAG----------------------------------------------
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>chr2D_1_TraesCS2D01G047800
ATTCATTTATCAACCATAGCTGCCTACAATCTAACCATGCGGAAAGATGATGTAGTCCTCTCGAGTGCCCGGCAGGGTGA
AGAA-TTTGCATGGCTGCTCTTTCGTGGATAACTGAACTCAAAGGCTAACTTGTTGCACCAGCACATTGCTGCTGATACC
ATTTATTCCAGATGCTGTTTTGAAGGCGAAGACATTGCAGACATCTTCATCTCATGCCCGCTCACTCAGCGTTCCACGTT
CTCTGGAACTGCTACCTTCCTGCTACTGTCGACCCAAGGATATGGCACACAATGCTTCTGATTATTCTATGGAAGATTTT
GGCTTCTCGAAATGCCATGACTTTCAGTCATGAGAACCACCACAGCATTACCACTCTCAGGCTCGCCATTTGCGATCTAA
TGCTATC-ATTCACACGATGAAGAAGCTGAAGAAAAGCAGGTGCTTATCACAGGCTCGCCATTTCCTTGTGGCGTTCA--
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----------------TACCTCTTATCACACTTACATGTGCTTATATAA-TCCCTTTTGTAATCTGTCAAACGATGGATT
GCAAAACTTGAATAATATATTCAGGTAGGG--------------------------------------------------
-----------GAACCCCCGGCGATTTCTCAAAAAAGAAAAAAAAACATGTTGCACCTTTTTTATTTTGCCACCGAACTC
CACCAGTAGAACAAACAACCTCATTTTCAGGTTTCAGCACTATGGATTTATATGAAAAAGTGGTACGTTTGTGATAGAGG
ACATTTGGCAATTGTATGGCCCTGGTTTACTCCTAATAATAGCAGTTAGTTACATATGTCTGGTGCTGAATGCATCTCCT
TGCATGACGTCGGTGCTGTGTGGTTCTGCACATACAAGCCTTGTGGCGGTGCTCAATAACGCAATTCCATGGATGCTGCT
AGCTGTTGGCGTTCGTATATAACCTCAAGCTCGCACTGGGTTTCTAATCCG-CACTCAGTTTTTCCCAGCCCTAAGGAAG
TGTAGTTCACATCCCCCTTTAACCCTTTTAACACCTACCAAAAATGGCGTCATCACACAAGTTCTTCCCGGCCGTCCTCC
TCCTCCTGCTGCTGGTTGTCGCCATGGGTAAGCAACTAGGCACGTTTTATGG-TTATTATCTGCTAATATATTTCTTTCT
GGTGTGTATCAACTCT----ATGCTCATACGAATCAATATGCATGCTACCTAATGATTTATGCTTCAAAATAATGACGGG
CAATCGACGTTTTGTGTTCAGAGGTGGCGCCGGCGCAGGCGGAGGAGCCGAGGGTGTGCGAGACGGATAGCACTCGGTTC
AAGGGGATATGCATGGTTGGCACAAACTGCGCCAACATTTGCCTCACCGAGGGCTTCACCAGCGGCAAGTGCTCTGGCTT
GAAGAGGAAGTGCATTTGCACCAAACCATGCTAGCTAGACTGATAAAACGT----GGTAATGACCGTAAATACCTATAGA
TCTGTTCTCAAGATGGTCTGAGTCACATCGATCTGCCGTGCATGCCTCTG-CATACTTCAGGTTCACGGCATCGCGATGT
TCTTTCTTCA---GTTACTATGAAGGATATAATTTTATTTCTTTCAACAAGCTAGAAGATGTATGGTCTAAGCATGCAAG
TGTTCATTGTATTC---TATCATATGTGTATTTTTTTGACCCTTTTCTCTATGTTATTACAGTTTTTATTGCTGATCAAT
TTGATTTCTTGTCGTAATAACAGTTATAAGAGAGCTCCCTTTATATTACCATATGTATATGCTGTTTGAGATTTCTTAAA
TTGCACTCAGACTTTACTGTTCATTGCGGGTGCAATGCCCCCAGGTTTACGAAAACCTGTCTCGTTTTTTGGGTGCACAT
CCAACCATCCGCATTTTCTTTCCGCTCCATGTATAAAATCAATTCAGAATTGATCTGTATGTTAAAATATGGACACTAGG
ATCTACAGTGACTTTCCCTGAACAAAGAACGAGTCCTTTTGCTAACATTTTATATTCCTTTACAAAGAGAATTTCTGAAC
ATGAGTTTTTTATGCATGAAAATACGAGA--AAAACATCATCTGTCTATTTGTAAATAACTAAATATACAGAACATCTCT
TTGTTATTATAACCACTTGACATCTCTTATTCATTTTCTTTGATAAGAAAATGATCTGGTTTTTAGTTATTATATTGTGA
TGCCGTACGTCTCTACACCATCTGGATGAACGGCATGAGGACACAAAAAACCTGAGAAACTAGAGCG-------------
---------------------------------------------------------GAACTCCAAGCGAGCGCAGAGAT
CCATGGTCTCCCCCGTCTCCCGGTGCCGATACCTACTGTCTGAGGCGAGAGAGACTGCTGTAAACAGCGGGGATGAGGAT
GAGAGGTTGTCTTGGGGCTAGGGTTTTTCTTT-TTTTTATGGGGGAATGAGAGCATTGGTGAATATTAATGTAGGTAC
>chr2A_1
ATTCATTTATCAACCATAGCTGCCTACAACCTAACCATGCGGAAAGATGATGTAGTCCTCTCGAGTGCCCGACAGGGTGA
AGAA-TTTGCATGGCTGCTCTTTCGTGGATAACTGAACTCAAAGGCTAACTTGTTGCACCATCACATTGCTGCTGATACC
ATTTATTCCAGATGCTGTTTTGAAGGCGAAGACATTGCAGACATCTTCATCTCATGCCCGCTCACTCAGCGTTCCACGTT
CTCCGGAACTGCTACCTTCCTGCTACTGTCGACCCAAGGATATGGCACACAATGCTTCTGATTATTCTATGGAAGATTTT
GGCTTCTCGAAATGCCATGACTTTCAGTCATGAGAACCACCACAGCATTACCACTCTCAGGCTCGCCAGTTGAGATCTAA
TGCTATC-ATTCACCCGATAAAGAAGCTGAAGAAAAGCAAGTCGCC-----------------TCCTTGTGGCGTTCA--
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----------------TACCTCTTATCACACTTACACATGCTTATATAA-TCCCTTTTGTAATCTGTCAAACGATGGATT
GCAAAACTTG-ATAATATATTCAGGTAGGGGAGTCGAACTGAACTGCTAGACTACGTTGAGTGATGAACTCAATGATTAA
AAAAAAAAACTGAACCCCCGGTGATTTCTCAAAAAAGAAAAGAAA-CATGTTGCACCTTTTTTATTTTGCCACCGAACTC
CACCAGTAGAACAAACAACCTCATTTTCATGTTTCAGCACTATGGATTTCTATGAAAAAGTGGTACGTTTATGATAGAGG
ACATTTGGCAATTGTATGGCCCTGGTTTACTCCTAATAATAGCAGTTAGTTACATATGTCTGGTGCTGAATGCATCTCCT
TGCATGACGTCGGTGCTGTGTGGTTCTGCACATACAAGCCTTGTGGTGGTGCTCAATAACGCAATTCCATGGATGCTGCT
AGCTGTTGGCGTTCGTATATAACCTCAAGCTCGCACTGGGTTTCTAATCCGTCACTCGGTTTTTCCCAGCCCTAAGGAAG
TGTAGTTCACATCCCCCTTTAACCCTTTTACCACCTACCAAAAATGGCGTCATCACACAAGTTCTTCCATGCCGTCCTCG
TCCTCCTGCTGCTGGTTGTCGCCATGGGTAAGCAACTAGGCACGTTTTATGGTTTATTATCTGCTAATATATTTCTTTCT
GGTGTGTATCAAATCT----ATGCTCATACGAATCAATATGCATGCTACCCAATGATTTATGCTTCAAAATAATGACGGG
CAATCGACGTTTTGTGTTCAGAGGTGGCGCCGGCGCAGTCGGAGGAGGCGAGGGTGTGCGAGACGGATAGCACTCGGTTC
AAGGGGATATGCATGGTTGGCACAAACTGCGCCAACATTTGCCTCACCGAGGGCTTCACCAGCGGCAAGTGCTCCGGCTT
GAAGAGGAAGTGCATTTGCACCAAACCATGCTAGCTAGACTGATAAAACGTGGATGGGAATGACCGTAAATACCCATAGA
TCTGTTCTCAGGATGGTCTGAGTCACATCGATGTGCCGTCCATTCCTCTGACATACTCCAGGTTCACGGCGTCGCGATGT
TCTTTCTTCA---GTTACTATGAAGGATATAATTTTATTTCTTTCAACAAGCTAGAAGATGTATGGTCTAAGCATGCAAG
TGTTCATTGTATTC---TATTATATGTGTATTTTTTT-ACCCTTTTCTCTATGTTATTACAGTTTTTATTGCTGATCAAT
TTGATTTCTTGTCGTAATAACAGTTATAAGAGAGCTCCCTTTATCTCACCATATGTATATGCTGTTTGAGATTTCTTAAA
TTGCACTCAGACTTTACTGTTCATTGCGGGTGCAATGCCCCCAGGTTTACGAAAACCTGTCTCGT-TTTTGGGTGCATAT
CCAACCATCCGCATTTCCTTTCCGCTCCATGTATAAAATCAATTCAGAATTGATCTGTATGTTAAATTATGGACACTAGG
ATCTACAGTGACTTTCC-TGAACAAAGAACGAGTCCTTTTTG----------TATTCCTTTACAAAGAGAATTTCTGAAC
ATGAGTTTTTTATGCATGAAAATACGAGAGAAAAAGATCATCTGTCTATTTGTAAATAACTAAATATAAAGAACATCTCT
TTGTTATTATAACCACTTGACATCTCTTATTCATTTTCTTTGATAAGAAAATGATCTGGTTTTTAGTTATTCTATTGTGA
TGCCGTACGTCTCTACACCATCTGGATGAACGGCATGAGGACACAAAAAACCTGAGAAACTAGAGCAGAACTCCACACGT
CTCTACACCATCTGGATGAACGGCATGAGGACACAAAAAATCTGAGAAACTAGAGCAGAACTCCACGCGAGCGCAAAGAT
CCATGGTCTCCCCCGTCTCCCGGTGCCGATACCTACTGTCTGAGGCGAGAGAGACTGCTGTGAACAGCGGGGAGGAGGAT
GAGAGGTTGTCTTGGGGCTAGGGTTTTTCTATATTTTTATCGGGGAATGAGAGCATTGGTGAATATTGATGTAGGTAC
>chr2B_1
ATTCATTTCTCAACCATAGCTACCCAG-ATCTAACCATGCGGGAAGATGATGTAGTCCTCTCGAGTGCCCAACAGGGTGA
AGATTTTTGCATGGCTGCTCTTTCGTGGATAACTGAACTCCAAGGCAAACTTGTTGCACCAGCACATTGCTGCTGACACC
AGTTGTTCCAGATGCTGCTTTGAAGGTGAGGACATTGCACACATCTTCATCTCATGCCGGCTCACTCAGCGTTCCACGGT
CTCTGGAACTGCTACCTTCCTGCTACTGTCGACACAAGGATATGGCACACAATGCTTCTGATTATTCTATGGAAGATTTT
TGCTTCTCGAAATGCCATGACATTCAGTCATGAAAACCAGTACAACATTACCACTCTCAGGCTCGCCATTTGAGATCTAA
CGCCATCAATTCACCCGATGAAGAAGCTGAAGAAAAGCAGGACGCC-----------------TCCTTGTGGCGTTCCTA
CCCATGGTTTTGGGTACCGGGCGGAAAATTCGGATACCGCCCGGTACCTGCGTTTCTCGCTACCCCACGAGAAATCTGCG
TACCGAGCAAAAAAAATCAATTTTTTTGAAAATTTTGAACTTGAATGGCTACTTTGAGGTCAAGTACGGCAAAAACTCCG
CTAAATCAACAAGTTGTCTGTGGTTTGGTGGTAAGTATGAATCTCCCTTCCTCGAACGCAGCGGTATGTCGCTAGTTCAC
ACAGTAGGAGAATCGAACCCACGACCTCTCACACACGTTGAAGACGGACGGGGAGAACCTGCCACTGCACCAACAGCGAG
TTTATGAACTAGTTGAGCTCCGAACTAATATATTCCGAACTCAGAAATTTTTGAATTCAAATTATGTTTCAAAAATTCGA
GCGGTTTTTCCTCGGAATTTTGCGGTAACCGCGGTATACGCGTTTCTCGCCCACCCTCGGAATTTTGTTGGGATTCGGTA
GCCAAATCATTGTTCCTACCTCTTATCACGCTTACACGTGCTTATGTAATTCCCTTTTGTAAGCTGTCAAACGATGGATT
GCAAAACTTGAATAATATAATCAGGTAGAG--------------------------------------------------
-----------GAACCCCCGGTGATTTCTCAAAAAAGAAAAAA----ATGTTGCACCTTTTTTATTTTGCCACCACACTC
CACCAGTAGAACAAACAGCCTCATTTTCAGGTTTCAGCACTATGGATTTGTATGAAAAAGTGGTACGTTTATGATAGAGG
ACATTTGGCAATTGTATGGCCCTGGTTTACTCCTAATAGTAGCAGTTAGTTACATATGTCTGGTGCTGAATGCATCTCCT
TGCATGACGTCGGTGCTGTGTGGTTCTGCACATACAAGCCTTGTGG---TGCTCAACGACGCAATTCCATGCATGCT---
-GCTGTTGGTGTTCGTATATAACCTCAAGCTCGCACTGGGTTTCTAATCTGTCACTCAGTTTTTCCCAGCCCTAAGGAAG
TAGAGTTCACATCCCCCTTTAACCCTTCTACCACCTATCAATAATGGCGTCATCACACAAGTTCTTCCCGGCCGTCCTCC
TCCTCCTGCTGCTAGTTGTCACCATGGGTAAGCAACTAGGCACATTTTATGGTTTATTATCTGCTGATATATTTGTTTCT
GGTGTGTATCAATAAAATCAATGCTTATACGAATCAACACGCATGCTAACTAATGATTTATCTTCCAAAATAAGAATGTA
TAATCGACCTTTTGTGTTCAGAGGTGGCACCGGCGCAGGCAGAGGAGGGGAGGGTGTGCGAGACGGATAGCACTCGGTTC
AAGGGGATATGCATGGTTGGCACAAACTGCGCCAATATTTGCCTCACCGAGGGCTTCACCAGCGGCAAGTGCTCCGGCTT
GAAGAGGAAGTGCATTTGCACCAAACCATGCTAGCTAGA-TGATAAAACGTGGATGGCAATGACCGTACATACCCATGGA
CCTGTTCTCAGGATGGTCAGAGTCACATCGATCTGCCGTGCACGCCTCTAACATACTTCAGGTTCACGGCGTCACGATGT
TCTTTCTTCAGCAGTTACTATGAAGGATATCACTTTATTTCTTTCAACAAGTTAGAAGATGTATGGTCTAAGCATGCAAG
TGTTCATTGTATTCTATTAGTATATGTGTATTTTTGTTACCTTTTTCTCTATGCTATTACAGTTTTTATTGCTGATCAAT
TTGATTTCTTGTGGTAATAACAATTATAAGAGAGCTCCCTTTATATTACCATATGTATATGCCGTTTGAGATTTCTTAGA
TCGCACTCCGACTTTAC---------------------------------------------------------------
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>SNPs
-----------------------------------------------------------------------S--------
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------------------------------------------------------------------------S-------
--------------S---------------------------SSSSSSSSSSSSSSSSSSSSS-----------------
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------------------------------------S-------------------------------------------
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---------------------S-----------------------S----------------------------------
-------------------------------------------------S--------------------S---------
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----------------------------------------------S---------------------------------
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------------------------------S-------------------------------------------------
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------------S-------------------------------------------------------------------
-----------------------------------------------S--------------------------------
--------------------------------------------------------------------------S-----
---------------------------------------------------------S----------------S-----
----------S-----------------------------------------------------------S---------
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--------------------S----------------S------------------------------------------
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-----------------------------------------------------------------S-----------S--
----------------S-------------------------------------------------S-------------
-----------------S----------------------SSSSSSSSSSSS----------------------------
-----------------------------------S--------------------------------S-----------
-----------------------------------------------------------------------S--------
------------------------------------------------------------------S-------------
-----------------------------------------------------------------S---------S----
-------------------------------------------------------------S-----------S------
------------------------------S---------S--------------------------S----------
>forward_462
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------------------------------------------GCTTATCACAGGCTCGCCAT------------------
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>reverse_2942
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-------------------------------------------------------------AAACAGCGGGGATGAGGAT
G-----------------------------------------------------------------------------
