>input_sequence_81854
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------ATGATCGGTGCGGCGAGGAGCGAATCCTCGCAGGTGTT
GTGGAGCACGATGGTGCTCTTGCCGCCCATGAAGATCTCCGAGGTGTACTCGTCCATGGCCCTCTTGCTGTCTCCAACGT
ATGGCACATACTGCAAAACAACGGTGAAGCTTCAGTATATAATTCCAGGTTTTTGCACCAACAGTGAATGTGTCCGTAGA
AGGTGACAGACAGATCAAGACAGACCTTGATCACGACGACGTGGTCAGGATGTTCCCCGGGCTCGTAGAGGATAGCATTG
CTCGAGACCATGTCATCCACCACGTTACTCTTGGAGATCTCCTTGGAACGGAATGTCTGCGGCGCAGATAGGTTCATCCC
ATCGTTGTTCCCCAGATGGTTGTAGCTGA---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------
>chr4A_1_TraesCS4A01G038600
CAGCCGACTAATTTGTGATGGTTCTATAGTTTTTT-GGAGAAGTGGTAGTTTTCCGGATCCCAAGCATGAATTGTGGTAA
TTTTATGCTAGTTACTTGATTTTCCGCTTGCATCTTCGAAGCAGTACTGCTCGCCGTCCCTGAACGACCCGGAGGTGACA
TGATAAAAGCAGAGCACACAACTCGCCGGTGAACCGATTGAAAGTTCCATATACTAGTAGTACAGATACTACTAATTAGC
TTACAAAACACGAACAAGGGGAGTGGACTAACTTAGCTAACACGCACCCTCCTCCCTCCACATCATCCAACACCATGGAG
TCCATGAGAATCTACCAAGTCGCAGAGGCCAGACAGAGAGCCGAAATAGTCTCGCAAGGACACACACACACTCACACCAG
GGTAAACTTAACCAGGGAAAGAAAGAATCGCAAAGGAAACCGAAGACAAGCCGCCAAATAATTCCACAGCCGATCTCGCC
TTCTTCTTCCTCCTGCCCTCCCGTCGCCCCTCGCCACTTGCTACGTACGTACGGTCGCTCTCGTCCCCGCGAGCTTGGGC
CCTGCTCCTCACTTGTACTCCAGGATCATGTTGTTCTCGGGCGCCAGGCCGACGCACGCCCTCATGATGTTCTCCAGCAT
GGCCCTCTGCTTCGCCAGGGCGTTCACCACCGGCGTGCCAGGAGGAACCTGTTAACAGAGGAATCC-GTTGCACGTCAGT
TAATCTGCTTTATTTGTTTCTAGGTTAATCAGAGTAGACAGTCGGCAGTTGTTTCTTACAAGGGGTGCCTTGGTGAGGTA
GCTCAGGATGGTGGCAACCGGATGGAAGGAGTGGAACTTGTCCTGCACAGATGCAAGTGGAATAAAGATGGCTTCAGTTT
GGCTCCCAAAGTATATCTCCACTGCAGAGTAGACTAGCAACATATCTGGTCAGACTCTTACCTCTCCCTCGGCCTTCAGC
TGAATCCTGGTGCTGAGCTCGGCCAGGAGCACCAGATCAAGAATGATCGGTGCGGCGAGGAGCGAATCCTCGCAGGTGTT
GTGGAGCACGATGGTGCTCTTGCCGCCCATGAAGATCTCCGAGGTGTACTCGTCCATGGCCCTCTTGCTGTCTCCAACGT
ATGGCACATACTGCAAAACAACGGTGAAGCTTCAGTATATAATTCCAGGTTTTTGCACCAACAGTGAATGTGTCCGTAGA
AGGTGACAGACAGATCAAGACAGACCTTGATCACGACGACGTGGTCAGGATGTTCCCCGGGCTCGTAGAGGATAGCATTG
CTCGAGACCATGTCATCCACCACGTTACTCTTGGAGATCTCCTTGGAACGGAATGTCTGCGGCGCAGATAGGTTCATCCC
ATCGTTGTTCCCCAGATGGTTGTAGCTGACAATTGAGGTGGGCTACAAGAACAGAAATCAAACAACTTGTGATATGTTTA
GGCTTCCATAACAGAGAAATGTCTGTCTTTACATTATATAAAGTACATGAAGAGTAGTCAAGACTCAAGGGTTCAGTTGA
CAGTTGATTGATACCTTGATTCCAGCACCAACAAGGAAATCCACCAAGACAGATTTCATCTTGGTCTGGCCACTCTTGAA
ATCATCGCCACCAATCAGGCAGTTGTTCTTAATAGCAAGATCGATCAGCCCTGCACAAAAGAAACTAGCATAAGCCTGTA
ACCAGACACTATATACAAGTACAGTCAGCAGAGCAAGCTACACACCAGGCACAAAGGTGTTCTGAGGGCTCCCGTTGATG
AATGGCACACCCTCCATGACGCAGGCGATGGCATACAGTGTTGACGGAGATATCTCTGCCTCGTTCTTGTCCACAGACGC
CAAGAGGTTCTCCATCGTGTCATTAAGCCCAACAGAGACGTTGCTGTACCTTTCAGTGTTTGCCGTCCAAAGCACCACTA
CCTTGTCCACCTTGTTCTTCTCCTTGAACTCCCTATTTCATTAAGCCATATAAGGGCGCAAATTTAAAAGTTGATGAAGT
TTTCAGCATGGAATGTCGAAACTAACAAGGACTGTTGGAGTAACATTTTGATGAGTAACTCAGCTTAAAATTTAATTTCA
GTAGAACGACCCTTTGTGGAGTCCACCAATCATACAAAAGCCAGTGGCTATAGAGAATTTGTCCAATCATACAAAAGCCA
CTGGCTGTAGAGAATTATGCA-----------------------GTGTTATTGTTTTAA-GCATATTCGCAGTGGTTATA
GAGAATTATCCATATTCAATCATGTGTGCTCGCGCACCAAACTCAGAGTACTCTT----TTTTTTTATTCTACTCTTAAG
TGCTGGAATATAGAGTATGTCAAGTTGTATACGTGCATATCTGTATACCTTATGTCTTTGATAATCTGCTCCATCTGCTC
TTTCTTTGTGCCCTTGA
>chr4B_6
GACTAAT----TTTGTGATAGTTCTATAGTTTTTTTGGAGAAGTGGTAGTTTTCCGGATTCCAGGCCTGAATTGTGGTAA
TTTTATGCTATTTACTTGATTTTCCGCTTGCATCTTCGAAGCAGTACTGCTCGCCGTCCCTGAACGACCTTGAGGTGACA
TGATAAAAGCA-----CACAACTCGCCGGTGAACCGATTGGAAGTTCCATATACTAGTAGT--ACATACTACTAATTAAC
TTACAAAACACGAACAGAGGGAGTGGACTAACTTAGCTAACACGCACCCTCCTCCCTCCACATCATCCAACACCATGGAG
TCCATGAGAAGCTACCAAGACGCAGAGACTTGGGAGAGAGCCGAAATAGTCTCGCAAGGACACACACTCACTG------G
GGTAAACTTAACC-AGGGAA---AGATTCGCAAAGGAAACTAAAGACAAGCCGCCAAATAATTCCACAGCCGATCTCGCC
TTCTTCTTCGTCCTGCCCTCCCGTCGCCCCTCGCCACTTGCTACGTACGTACGGTCGCTCTCGGCTCCGCGAGCTTGGGC
CACGCTCCTCACTTGTACTCCAGGATCATGTTGTTCTCGGGCGCCAGGCCGACACACGCCCTCATGATGTTCTCCAGCAT
CGCCCTCTGCTTCGCCAGGGCGTTCACCACCGGCGTGCCAGGAGGAACCTGTTAACAGAGGAATTCAGTGGCACGTCAGT
TAATCGTCTTTATTTATCTATAGGTTATTTAGAGCAAACAGTCGAGAATTGTTTCTTACCAGGGGTGCCTTGGTGAGGTA
GCTCAGGATGGTGGCAACCGGATGGAAGGAATGGAACTTGTCCTGCACAAATGCAAGTGGAGCAGCGAAATCTTCAGTTT
GGCTCCCAAAGTATATCTCGACTACAGAGTAGACTAGCAACATATCTCGTCAGACTCTTACCTCTCCCTCGGCCTTCAGC
TGAATCCTGGTGCTGAGCTCCGCCAGGAGCACCAGATCAAGAATGATGGGTGCAGCGAGGAGCGAGTCCTCGCAGGTGTT
GTGCAGCACGATGGTGCTCTTGCCCCCCATGAAGATCTCCGAGGTGTACTCGTCCATGGCCCTCTTGCTGTCTCCAACGT
ATGGCACGTACTGCAAAAGAACGGTGAAGCCTCAGTATATAATTCCAAGTTTTTGCACCAACAGTC-ATCTGTCCGTGGA
AGGTGAGAGACAGATC--GACAGACCTTGATCACGACGACGTGGTCAGGATGCTCCCCGGGCTCGTAGAGGATAGCATTG
CTCGAGACCATGTCATCCACCACATTGCTCTTGGAGATCTCCTTGGAACGGAATGTCTGCGGTGCGGATAGGTTCATCCC
GTCGTTATTCCCAAGATGGTTGTAGCTGACAATTGAGGTGGGCTACAAGAACAGAAACCAC----------ATATGTTTA
TGCTTCG-TAACAGAGAAATGTCTGTGTATACATGT----------------------------------GTTCAGTTGA
CAGTTGATTGTTACCTTGATTCCAGCACCAACAAGGAAGTCGACCAAGACGGATTTCATCTTGGTCTGGCCACTCTTGAA
ATCATCGCCACCAATCAGGCAGTTGTTCTTAATAGCAAGATCAATCAGCCCTGCACAAAAGAAACTAACATAAGCCTGCA
ACCAGACACTATATACAGGTACAGTCAGCAGAGCAAGCTACACACCAGGCACAAAGGTGTTCTGAGGGCTCCCGTTGATG
AACGGGACGCCCTCCATGACACAGGCAATGGCATACAGTGTTGATGGGGATATCTCTGCCTCGTTCTTGTCCACAGACGC
CAAGAGGTTCTCCATCGTGTCATTAAGCCCAACAGAGACGTTGCTGTACCTTTCAGTGTTTGCCGTCCAAAGCACCACTA
CCTTGTCGACCTTGTTCTTCTCCTTGAACTCCCTATTTCATTAAGCCATATGAGGGCGCAAATTTAAAAGTTGATGAAGT
TTTCAGCATGGAATGTTGAAACTAACAAGGACTGGTGGAGTAACATTTTTATGAGTAACTCGGCTTAAAATTTAATTTCA
GTAGAACGACCCTTCGTGGAGT---CCAATCATACAAAAGCCGGTGGCTATAGAGAATTTGTCCAATCATACAAAAGCCA
CTGGCTGTAGAGAATTATGCATATAGAATCATACCAGTTAAGTAATGTTATTGTTTTAA-GCATATTCGCAGTGGTTATA
GAGAATTATCCATATTCAATCATGTGTGCTCACGCACCAAACTCAGAG------T----TTTATTTATTCTACTCTCAAA
TGTTGGAATATA-----TGTCAAGTTGTATACGTGCATATCTGTATACCTTATGTCTTTGATAATCTGCTCCATCTGCTC
TTTCTTTGTGCCCTTGA
>chr4D_118
AAA-----------------------------------------------------------------------------
-----------------------------------------CAGTACTGCTCGCCGTCCCTGAACGACCGGGAGGTGACA
TGATAAAAGCAGAGCACACAACTCGCCGGTGAACCGATTTAAAGTTCCATATACTAGTAGCACACATACTACTAATTAAC
TTACAAAACACGAACAGAGGGAGTGGACTAACTTAGCTAACACGAACCCTCCTCCCTCCACATCATCCAACACCATGGAG
CCCATGAGAAGCTACCAAGTCGCAGAGACCAGACAGAGAGCCGAAATAGTCTCGCAAGGACACACACACAC--ACTACAG
GGTAAACTTAAACAAGGGAA---AGAATCGCAAAGGAAACTAAAGACAAGCCGCCAAATAATTGCACAGCCGATCTCGCC
TTCTTCTTCCTCCTGCCCTCCCGTCGCCCCCCGCCACTTGCTACATACGTACGGTCGCTCTCGGCCCTGCGAGCTTGGGC
CATGCTCCTCACTTGTACTCCAGGATCATGTTGTTCTCGGGCGCCAGGCCGACGCAGGCCCTCATGATGTTCTCCAGCAT
CGCCCTCTGCTTCGCCAGGGCGTTCACCACCGGTGTGCCAGGAGGAACCTGTTAACAGACAAATTCAGTTGCACGTCAGT
TAATCGTCTTTATTTATCTGTAGGTTATTTAGAGCAAACAGTCGAGAATTGTTTCTTACCAGGGGTGCCTTGGTGAGGTA
GCTCAGGATGGTGGCAACCGGATGGAAGGAGTGGAACTTGTCCTGCACAGATGCAAGTGGAACAACGAAAGCTTCAGTTT
GGCTCCCAAAGTATATCTCGACTGCACAGTAGACTAGCAACATATCTCGTCAGACTCTTACCTCTCCCTCGGCTTTCAGC
TGAATCCTGGTGCTGAGCTCGGCCAGGAGCACCAGGTCAAGGATGATGGGTGCGGCGAGGAGCGAGTCCTCGCAGGTGTT
GTGCAGCACGATGGTGCTCTTGCCCCCCATGAAGATCTCCGAGGTGTACTCGTCCATGGCCCTCTTGCTGTCTCCAACGT
ATGGCACATACTGCAAAACAACGGTGAAGCTTCAGTATATACTTCCAAGTTTTTGCACCAACAGTGCATGTGTCCGTAGT
AGGTGAGAGACAGATC--GACAGACCTTGATCACGACGACGTGGTCAGGATGCTCCCCGGGCTCGTAGAGGATAGCATTG
CTCGAGACCATGTCATCCACCACGTTGCTCTTGGAGATCTCCTTGGAACGGAATGTCTGCGGTGCGGATAGGTTCATCCC
GTCGTTGTTCCCCAGATGGTTGTAGCTGACAATTGAGGTGGGCTGCAAGAACAGAAACCAC----------ATATGTTTA
GGCTTCG-TAACACAGAAATGTCTGTGTATACATGT----------------------------------GTTCAGTTGA
CAGTTGATTGTTACCTTGATTCCAGCACCAACAAGGAAATCCACCAAGACAGATTTCATCTTAGTCTGGCCACTCTTGAA
ATCATCACCACCAATCAGGCAGTTGTTCTTAATGGCAAGATCGATCAGCCCTGCACACAAGAAAATAACATAAGCCTGTA
ACCAGACACCATATACAGGTACAATCAGCAGAGCAAGCTACACACCAGGCACAAAGGTGTTCTGAGGGCTCCCGTTGATG
AACGGCACACCCTCCATGACGCAGGCAATGGCATACAGTGTCGATGGAGATATCTCTGCCTCGTTCTTGTCCACAGACGC
CAAGAGGTTCTCCATCGTGTCATTAAGCCCAACAGAGACGTTGCTGTACCTTTCAGTGTTTGCCGTCCAAAGCACCACTA
CCTTGTCCACCTTGTTCTTCTCCTTGAACTCCCTATTTCATCAAGCCATATGAGGGCGCAAATTTAGAAGTTGATGAAGT
TTTCAGCATGGAACGTTGAAACTAACAAGGACTGGTGGAGTAACATTTTCATGAGTAACTCAGCTTAAAATTTAATTTCA
GTAGAACGACCCTTCGTGGAGT---CCAATCATACAAAAGCCGGTGGCTATAGAGAATCTGTCCAATCATACAAAAGCCA
CTGGCTGTAGAGAATTATGCATATAGAATCATACCAGTTAAGTAGTGTTATTGTTTTAAAGCATATTCGCAGTGGTTACA
GAGAATTATCCATATT-AATCATGCGTGCTCAGGCATCAAACTCAGAG------TACTCTTTTTTTATTCTACTCTTAAG
TGCTGGAATATAGAGTATGTCAAGTTGTATACGTGCATATCTGTATACCTTATGTCTTTGATAATCTGCTCCATCTGCTC
TTTCTTTGTGCCCTTGA
>SNPs
S-SSSSSSSSS--------S---------------------------------------S---S--S-------------
----------S----------------------------------------------------------S----------
----------------------------------------------------------------S-------------S-
----------------SS--------------------------------------------------------------
----------S----------------S--------------------------------------------S--SS---
--------------S--S--SSS-----------------SS--------------------------------------
---------------------------------------------------------------S----------------
-S------------------------------------------------------------------------------
S---------------------------------------------------------------S---------------
-----SS--------S-S-S-------S-S----S-S-------SS-S-----------S--------------------
--------------------------------------------------------------S--S--SS----------
-------------------S---------------------------S--------------------------------
-----------------------------------------------S-----------------S--------------
---S--------------------S-------------------------------------------------------
-----------------------------------------------S------------------S-------------
------S---------SS----------------------------------S---------------------------
--------------------------S-----------------------------------S--S--------------
S--------------------------------------------------------S--SSSSSSSSSSS---------
------SS------------------S-S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------
----------S---------------------------------------------------------------------
-------------------------------------------------------------------S------------
-----------------S--------------------------------------------------------------
--S-----------------------S-----------------S-----------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S----------------------------
----------------S-----------------S--------------S------------------------------
--------------S-------SSS-----------------S-------------------------------------
--------------------------------------------------------------------------------
-------------------------------S----------------SSSSSS--------------------------
--------------------------------------------------------------------------------
-----------------
>forward_67
-----------------------------------------------AGTTTTCCGGATCCCAAGCA-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------
>reverse_1065
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------GCCCATGAAGATCTCCGAGG------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------
>forward_1044
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------AATCCTCGCAGGTGTT
GTGG----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------
>reverse_2272
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------GCGCACCAAACTCAGAGTAC-----------------------------
--------------------------------------------------------------------------------
-----------------
