>input_sequence_81848
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------------------------------------------------ATGAAGAAAGGC---GGAGCCAGCAGCGCCGC
CGCGATGACGGCGGCCGGCGACGCGAAAGAGCAGCACGAGGGAGAGGCCAGGCCTCCGAAACAGTACACGGCGGCGCATT
CGGCTTGTAGCTGGGCGCTGCTCGCGGAGGCGAGGCGGTACAACGCCATGGAGGAGGAGGACGTGGTGGATGAGTACGGG
CGGGCAGGCAAACTCCACACCTACGACCAGGACAAGGAGTGGAAGAAGCGATTTGCGAGGGTCGTGAAACTCAACCCGTG
CCCGTGGCCCAATCACATGGTTGCTCGGATCGAGGAATACATGTATTGCCTCGAAGAGGACGATGACGAATTTAGAATAG
GGCTTTTTTCATTAATCGGCGAAGAAATTAGGGGTTAA------------------------------------------
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>chr3B_1_TraesCS3B01G168600
TTTTCCTTTTGTTTTCTGTAATAGCCCTTCCTTTGGCTTGGACAACTTACAGCTCTAGATCGCCTAGACTGTGGTTTGAT
TGTACTTTCACTCCTTTCTAATAAAATGCGGCAGCTGGCCCTTCGAGGAATTAGCCACGGGGTAGAATCAATATTGTGGC
GGGTCAGGTGACACGCCAACCATTGGTTCTCAATGTATCTATGGAGGGCCATGAGAAATTCCTGCCACGGTAATATTTTG
CTAAACCATGCCCAAACTCTCCAAATTTTTTCTAAAGTTAGCAGTAGAGGGTGCAGCTGGCGCCCGCCACAGGTCTTGTA
AGTATGGAAAGTGTATCCTTCGTGCTCAAATTACCTCCATTCTTCTTGTTGCACCATTCTATAATCATTGTCCGGCTGCC
GGAATAGTAAGCTATGTTCGAAAACACCATTTTGAGGAACAGTAAGATCGTACTGTACTTTCTTCGCTAAGAAATACCTT
GGATGTCATTCCTTAACGAACCTTCACACATGCATAGAATGGTCGACCAAGTTTGATATTCCCAAATTTTAGTTTTTCTT
TTCTAGTGGCTTTTTAGAATTTGCTATTCATGCGTGGAACCATAGTCACCTTTGTATTTTCAGGGCCTTGTAAGCGTTGG
ACGACTCAAGTTTTTTTTTTTTTTGAGGTAAGAACAACTTAAGTATAGTGGCCTTCGCGCGTAGAAGAAAAAGCACAAAG
TAAAATGTGAGTTATAATCAAATCTCTCTAAATCTAGTCACGTGGTATGTTTGTCAA---------GGAGATAGC-AATA
CCGTGGCGGGCGTGGGCAGCCAA--AA-----------------------------------------------------
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------------------GAAAAGAACTATCCAAATCTCTCAATCCGACTCGTCACGGTAC----CGAGGGGCGACCCAC
ACAAACCATCTATAAATGCAGCCGAGCGGTGCGCAGCCGGCCGGGGCTTTCGGGAACAAACAGAAGATTAATCCATTGCA
GTACACGCTCAACGCGTAG-GTTCGGTAGAGAAGAAAGCCTGGGAGGCATGAAGAAAGGC---GGAGCCAGCAGCGCCGC
CGCGATGACGGCGGCCGGCGACGCGAAAGAGCAGCACGAGGGAGAGGCCAGGCCTCCGAAACAGTACACGGCGGCGCATT
CGGCTTGTAGCTGGGCGCTGCTCGCGGAGGCGAGGCGGTACAACGCCATGGAGGAGGAGGACGTGGTGGATGAGTACGGG
CGGGCAGGCAAACTCCACACCTACGACCAGGACAAGGAGTGGAAGAAGCGATTTGCGAGGGTCGTGAAACTCAACCCGTG
CCCGTGGCCCAATCACATGGTTGCTCGGATCGAGGAATACATGTATTGCCTCGAAGAGGACGATGACGAATTTAGAATAG
GGCTTTTTTCATTAATCGGCGAAGAAATTAGGGGTTAATTACTACTCCATCAACTATAAATAGTACTAG--TATCCTCTA
AATGTAAGATGCAATCGTCATGTTTGTCGCATCAACTATTTTATTA----------------------------------
---------------CTTATTAAGAGCATCCTCAACGCAGAGCCTTAAACCATCTGCATCTGTCCGGACAACGGAAGTCA
TACATCATAATTTTGTATGCGGTCCGAACGTACTTTTTCTCGTATATTAGAGACAAACTATGGACATACAGACAACAACC
AAATTCGCTTCTGG-TCCCATGGCCCACCCAAACCCCCTACCTTGTCCCGGCACGTGG---------AACGGTTAGCGCC
GCTCCAGAGTGTCAGTGCCCGCATTCATTTTCGGCCAAAGCGGACGCG-GCACTCACTTGCATCGATATTGAAGCGACGC
GCCGGTCGAGAGAGCGCTGA-CCCGCCGCTTCCCGGTGCAGGCGACTGTTGCGCGTTCAAACGACACGACGGTCGTTCGG
CAGTCAGTCTGCCGCCCACGTTAAGGACACGCG-GTTGCCGGGGCACGTACTCCGATGCCACCCTTCCGTCC-CTCTGTC
GCCCATCATTGCTATATAAACTGCTGCCCCGACCATAGTCGCGGTCATC-GCCGTCGATC-------ACTCTCCACACCA
-----------CTTCC-A-CC-TGGATTCCTCCCATGCCAAAGCTCTCTGGGATGGGCTGACGCTGGACT---AGAAGGA
GTTGGCCGCCATTGTAGTCGGCTGCCTGGCCAGCAGGTAG------------CC---GGAGGATGACAACGTCCCAACTG
GAGGACGCGGCCGACGACGAGCCAACATCAC------------------------CCTCCTCCTATGTGCCACCCT----
-----------------------------------C-----------GC-CGGTGCATTACACACCATGTCCATCGGCGA
GGCC----CG-TGCCCATTAGATGGACATGGTGCGGGAGG------------------------CACAGGCCGACGCCAC
CTACAACCACCAACTCCTCCAGGAGCACCTACAGGCGGAGGAGTAGCTTTCCGTCGGCAGGGTGATCGCGTCGGATGCGG
ACCCGGCGGAGCAGGCGGCGTTGCTCGGCTCCTACCGCACCGATCAA
>chr3A_598
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-------------------------------------AACCACAGTCACCTTTGTATTTCCAGGGCCTTGTAAGCGTCGG
ACAACTCAAGCTC--TTTTTTTTTGAGGTAAGAACAACGCAAGTATAATGGCCTTTGCGCGTAGAAAAAAAAGTGCAAAG
TAAAATGTGAGT--TAATCAAATCTCTCTAAATCTAGTCACGTGTTATGTTTGTTATTAGTACTATGGAGA-AGC-AATA
CCGTGGCGGGCGTGGTCAGCCAA--AAAAACAAGGTGAGTGATCTGCGCCGGCGCACCGGCCCAACGGTTGGGCCGGTCC
AGCCCCAGCCGTCAGATCTGGTCCCCCTGCACCGTCAGATTCGTTCCTTTCCTCACCTCCTTCTTCAACCCCCCGCACGG
GAAAAGGACGGGCCCCCTCATGCTCGTTGACGCCCCAGCACGAGCCGACCGCCTCGCCTTGCCTCCTCACCGCCAGTCGC
CCCCCGCCGTCGGTCGCCTACGGTCGCCGCCCTCGCCGCTGGTCGCCCGCCCTCACCTATATCGCTTCGTGTGTTCCTGA
AACCTCCATGGATGCAGCAGCGTGCGGCCATGGTTACGGCCGGTCGAGGTTGCAGCCCGCCACGAGCCCGTAGCAGCTCG
CCGGCGACTAGGTTGCAGCATCCGCCCCTGCCCCCCCCCTTCCCCCCGTGCTGGATCTCGCCGCCGGAATTCACAGAAAC
CCACCACGGGCATCTGGCCGTCGTGGGAAAAAAATGGATGTAGCAAAAACTGTGGACGGTAGTAGCAAAAAACCACATGG
TTGAAGCAAAAATGTCAAACCATATCTAGTTGAAGCTTTTTCTAAAGCCGGATGTAGCTTTTCTGTTTGCTGGATGTAGC
ATTTTCCAGTACTGGTTGCAGCTCTGATGCATGTCCATCAAAACTCATTCTTCAGTATTGGTTGTAGCAAAATCGCCTCG
CCGGTTCCAGCAAAATGAACATCGTGGTTCCAACATTTTCCGTTGCCGGTTCCAACATCTAGCGAGAGCGGGTTGCAGCA
TCTGTGGGCGCGTGGTCACCGCAGTCACCACCTCGTAGTAGCAAAAAATCATGCCGGTTCCAGCATCTAGCTAGAGCGGT
TGCAGCATCTGCAAGTGTGGTCACCGTGGTCGCCGTCCGTAGTAGCAAAAAATTATGCCCGTTGCAGCACTTTGGCTCAC
CGGTCGTAGCATATTTGGACGCCCGTTGTAGCACCGCTTGCTTGTCAGATGCATCCCCGTGCTTGGCCTCATCGCGCGCG
GCCATGGCGAAGGGAGCGGGCATGGTGACGGGCGCATCCATGGCGACTTTCAACTCCGGCTCGCCGGGCGCGGAAGGAAC
CTGCAACCGAGGGGGGAGGGTGGCCAGCGGGAAAGAAGGGGCGGCGGAATCTGAAGGAGGAAGAAGGGGATCGGGAGAAG
CGCGAGGCGTGCGATGCGCTTTGATCGAGTGGCCCGCACGGGACCGGCGGAACGGTTCGGCCGGCGCACCGTTTCTAAAC
ACTTCCCAAAAAACAAACAAAAAAAACTATCCAAATCTCTCAATCCGACTCGTAACGGTAT-------------------
ACAAACAATCTATAAATGCAGCCGAGCAGTGCGCAGCCGGCCGGGGATTTCGGGAACAAACAGGAGATTAATCCATTGCA
GTACACGCTCAAACGCGTACGTTCGGTAGAGAAGAAGGCCGGGGAGGCATGAAGAAAGGCCGCGGAGCGAGCAGCCCCGC
TGCGATGACGGCGGCCGGCGACGCGAAAGAGCAGCACGAGGGAGAGGCCAGGGCTCCGAAACAGTACACGGCGGCGCATT
CAGCTTGTAGCTGGGCGTTGCTCGCGGAGGCGAGGCGGTACAACGCCATGGAGGAGGAGGACGTGGTGGATGAGTACCGG
CGGGCGAGCAAACTCCACACCTACGATCAGGACAAGGAGTGGAAGAAGCGCTTTGCAAGGGTCGTCAAACTCAACCCGTG
CCCGTGGCCCAATCACATGGTTGCTCTGATCGAGGAATACATGTATTGCCTCGAAGAGGACGATAACGAATTTAGAATAG
GGCTTTTTTCATTTATCGGCGAAGAAATTAGGGGTTAATTGCTA------------------------GTATATCCTCTA
AATGTAAGATGCAATCGTCATGTTTGTCACATCAACTATGTTATTATTATTAA---------------------------
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>chr3A_669
TAAAAA--------------------------------------------------------------------------
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-----------------------------------AACTCAAGTATAGTGGCCTTCGCGCGTGGAAGAAAAGGCGCAAAG
TAAGGTGTGAGT--TAATCAAATTTCTCTAATTCTAGTCACGTGTTATGTTTGTTA------CTATGGAGATAGCAAATA
CCGTGGCGGGCGTGGTCAGCCCCCCAA-----------------------------------------------------
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------------------AAAAAACACTATCCAAATCT--CAATCCGACTCGTCATGGTATCCATCGAGGGGCGGCCT--
ACAAACCATCTATAAATGCAGCCGAGCGGTGCGCAGCCGGCCGGGGCTTTCGGGAACAAACAGAAGATTAATCCATTGCA
GTACACGCTC-AACGCGTACGTTCGGTAGAGAAGAAGGCCGGGGAGGCATGAAGAAAGGCGGCGGAACGAGCAGCCCCGC
CGCGATGACGGCGGCCGGCGACGCGAAAGAGCAGCACGAGGGAGAGGCCAGGGCTCCGAAACAGTACACGGCGGCGCATT
CGGCTTGTAGCTGGGCGCTGCTCGCGGAGGCGAGGCGGTACAACGCCATGGAGGAGGAGGAGGTGGTGGATGAGTACCGG
CGGGCAGGCAGACTCCACACCTACGACCAGGACAAGGAGTGGAAGAAGCGCTTTGCGAGGGTCGTGAAACTCAACCAGTG
CCCGTGGCCCAATCACATGGTTGCTCAGATCGAGGAATACATGTATTGCCTCGAAGAGGACGATGACGAATTTAGAATAG
GG-TTTCTTCATTAATCGGCGAAGAAATTAGGGGTTAATTGCTA------------------------G--TATCCTCTA
AATGTAAGATGCAATCATCGTGTTTGTCTCATCAACTATTTTATTAATTTTAAATGTAAGATGCAATCATCATATTTGTC
TCATCAACTATTTTACTAATTAAAGGCATCTTCACCGCGGACTATCAAACCATCCATATCTGTGCGGACCGCGAAAGTCA
TACAACACGATCATATACGTGGTTTGAACGTACTATCTCTCGCATATCAGAGACAAACTATGGACGTACGGACAACAACC
AAACCTGCTTCTGA-TCCCCTGTCCCACCCAAACACCCTACCTTGTCCCCGCACACAG---------AACGGTCAGCGCC
ACTTCAAAGTGTCAATTTCCGCATTCATGTCCAGCTAGAGCGGACACG-CCACTCACTGGCGCCGACATTGAAGCGACGC
GTCGGCCAAGAGAGCGCCGA-CCCATCGCTTCCCGGTGCAGGCGACTATTGCACGTTCAAACGACACGACGGTCGTTCGT
CAGTCAGTTTGCTGCCCACATAAATGACACGCG-GTTGCCGAGGCATCTACTCTGACGCCACCCTTCCGTCC-CTCTGCC
GCCCATCAATGCTATATAAACTGCTGGCCCGGCCATAGTCGCGGTCATC-GCCGCCGTTC-------CCTCTCCGCACCA
-----------CTTCC-A-CC-TGGATTCCTTCCCTGCCAAAGCTCCCTGGGATGGGCTAACGTTGAACCAGAAGAAGGA
GTTGGCCGCCATTGTAGCCGGCTGGCTGACCGACAGGTAG------------CC---GGAGGACGACGGCGTCCCAAATG
GAGGATGCGGTCGACGAAGAGCCAGCGTCAC------------------------CCTCCTCCTCTGCGCCACCCT----
-----------------------------------T-----------GC-CGTTGCATTACACACCATGTCCATCAGCGT
GGCC----CG-TGCCCATTACATGGACATGGTGCGGGAGT------------------------CACAGGCCGACACCGC
CTACAACCACCAACTCCTCCAGGAGCACCTACAGGCGGAGGAGCAGCTTTCCGTTGGCAGGGCGATCGCGTCGGATGCGG
ACCTGGCGGAACAAGTAGCGTTGCTTGTCTCCTAGCGCACCG-----
>chr1D_1625
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------GCTTCTGACTGCCCTGGCCCACCAAAAACCCATCCCCCTCCCGCGCGTTTT------------CGGTCAGCGCC
GCTCCGGAGTGTCAGCGCCCACATTCATACCAGGCCAGAGCGGACACAACCGCTCA---------GCATTGAAGCGACGC
GCCGGTCGAGAGAGCGCTGCCTGCGCAGC-TTTTGGTGCAGGCGACTGTCGCGCGTTCAAATGACATGACGGCTGCCCGT
CCGTCCGTCTGCCGCTCACATTGATGGCATGCG-GTTGCCGAGGCGTCTCCTCTGACGCCACCCCTCCGTCC-CTCTGCT
GCCCATCATTGCTATAAAAACCGGTGCCCCGGTCATAGACGCTGTCATCCACCTCCGATC-------CCTCTCCGCACCA
-----------CTCCC-A-TCATGGATTCCTCCCCGGCCAAAGCTCTCTGGGATGGGCTGACATCAGACCAGAAGAAGGA
GATGGCCGCCATTGTTGCCGGCTGGCTGGCCGGCAGGCAA------------CC---GGAGGACGACGACGTCCCAA-TG
GAGGACGTTACTGACGACGA------------------------------------------------------------
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>chr3B_1638
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--------------------TGGCCCACCCAAAACCCATCCCTTGTCCGTGCGCGCATCCTACCCGAAACGGTCAGCGCC
GCTCAAGAGTGTCAGTGCCCACATTCATGCCCGGCCAGAGCGAACGCGATCGCTCACTTGTGCCGACATTGAAGCGGCAC
GTCGGCCGAGAGAGCGTCTTCCCCGCCGCTTCCCGGTGCAGGCGACTGTTGTGGGTTCAAATGACATGATGGTTGCCCGC
CCGTTCGTCTGCCGCACATAGTAATGACACGCT-GTTGCCGAGGCGTCTACTCCGGCACCACCCGTCCACCC-CTCTGCG
GCCCACCATTGCTATATAAATTGTTGGCCCGTCCATAGCTGCAG------------------------------GCACCA
-----------CTCCC-A-TCATGGATTCCTCCCCCGCGAAAGCTCTCTAGGACGGGCTGACGCCAGACCAGAAGAAGGA
GATGGCCTCCATTGTTGTCGGCTGGCTGGCCGGCAGGCAG------------CT---GAACAATGACAACGTCCCAA-TG
GTGGACGCGGCCGACGACGAGCCGCC----------------------CCACCCTGCTCGTCCTCTGCGACATCCT----
-----------------------------------C-----------AT-CGATGCATTG--CACCATGACCATCAGCGA
GCCA----CG-TGCCCATTACATGGAC----------------------------------------------ACGCCGC
CTACAACCACGAACTCCTCCAGGAGCACCTGCAAGCGGAGGAGCAACTCGCTACCGGCAGGGCGGTCGCGCCAGACGCGG
TCGTGGCAGAGCAGGAGGCGCTGCTCGAGTCCTACCGC---------
>chr2A_1673
T-------------------------------------------------------------------------------
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-----------------------------------------------------------------GAAACGGTCAGCGCC
GCTCCAGAGCGTTAGTGTCCGCATTCATGTCTGATCAGAGCGGACACGATCGCTCACTAGTGCCAACATTGAAGT-GTGC
ACCGGCCGAGAGAGTGCCGCCGACGCCGCTTCCTGGTGCAGGCGACCGCTCCACGTTCAAATGACATGATGGCCGCCCAT
CCGTCTGACTGTCGCCCACATTAATGACACACA-ATTGCCGAGGCACCTACTCCGGCACCACCCGTCCTTCC-CTCTGCC
GTCCACCATTTCTATATAAACTGCTACCCCGGCCATAGCCACAGTCATCCGCCTTCCATC-------CCTCTCCGCACGA
-----------CTCCC-A-CCATGGATTCCTCCCCCGCCAAAGCTCTCTGGGATGGGCTGACGCCGGATTGGAAGAAGGA
GATGGCCGCCATTGCTGCCGGTTGGCTGGC-GGTAGGCAG------------TC---GGAGGATGAAAACGTCCCAA-TG
GAGGACGCATCTGACGACGAGCTGGCACCAC------------------------CCTCCTCGTCCGCACCACCCTCCTC
CTCCTACG------------------TGCCACCCTC-----------AC-AGGTGCATTG--CACCATGTCCATCGGCAA
GGCC----CG-TGCCCATTAAATGGACATGGTGCGCGAGGAGC---------------GGGAGGCGCAAGCCGACGCCTC
CTATAACCACCAACTCCTCCAGGAGCACCTGCAAGCGGAGGAGCGGGTCTCCGCTGGCAGGGCGGTCGCACCTGACGCGG
ACCCGGCGGAGCAGGCTGCGATGCTCGACTTCTACCGC---------
>chr2D_1673
T-------------------------------------------------------------------------------
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-----------------------------------------------------------------GAAACAGTCAGCGTC
GCTCCAGAGTGTCAGTGCCCGCATTCATGCCCGGCCAGAGCGGACGCGACCGCTCACTGGCGTCGGCATTGAAGCGGCGC
GCCGGTCAAAAGAGTGCTGCCCGCGCCGCTTCTCGGTGCAGGCAATTGTTGCACGTTCAAATGACACGACGGCTGCCCGT
TCGTCTGTCTACCGCCCACATTAATGACACGCG-GTTGCCAAGGCGGCTACTCCGGCACCACTCGTCAATCC-CTCTGGC
GCCCACCATTGCTATATAAACTGCTAGCCCGGCCATAGCCGCAGTCATCCGCCCCCGATC-------CCTCTCCGCACCA
-----------CTCCC-ATCCATGGATTCCTCCCCCACCAAAGCTCTGTGGA-CGAGCTGACGCCGAACCAGAAGAAGGA
GATGTCCTTCATTGCTGCCGGCTGGCTGGCCTGCAGGCAT------------CC---GGAGGACGACGACGTCCCAA-TG
GAGGATGTGGCCGACGACGAGCCG--------------------------------------------------------
-------GTGCTACCCTCCTCGTCCGCGCCACCCTCCTCCTTACCCTGT-TGGTGCATTG--CAACATGACCATCGGCAA
GACC----TG-TGCCCATTACATGGACATGCTACGAGAGGAGCGGGAGGAACAATTCTGGGAGGCGCAGGCCGACGCCAC
CTACAACCACCAACTCTTGCAGGAGCACCTGCAGGTGGAGGAGCATCTCGGCGCCGGCAGGGCCATCGCGCCGAACACGG
ACCTGGCAGAGCAGGAGGCG---------------------------
>chr4B_1675
GAAGCG--------------------------------------------------------------------------
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-----------------------------------------------------------------------GTCAGTGCC
GCTTCAGAGCGACAGT-GCCGCATTCATGTCCGGCCCGAGCGGACACAACTGCTCACTCGTGCTCGCATTGATGCGGCGC
GCGGGCCGAGAGATCGCCGCTCGCGCCGCTTTCTGGTGCAGGCGACTGCTCCGAGTTTAAACGACACGATGGACGCCCGT
CCGTCCATCTGCCGCCCACATT----ACACACG-GTTGCCGAGGCGGTTACTCCGGTGGAACCTGTCCGTCC-CTCTGCC
GCCCATTATTGCTATATAAACTGTTGTCTCAATCATAGCCGCAGTCATCCGCCACCGATC-------CCTCTCCGCACCA
-----------TTCCC-A-CCATAGGTTCCTCCCCCACCAAATCTCTCTCGGACAGGCAGACATCG--GCAGAAGAAGGA
GATGGCCGTCATTGCTGCTGGT------------AGGCAG------------CC---GGAGGACGACGACGTCCCAA-TG
GAGGACACGGCCGACGACGAGCCGACGACAC------------------------CCTCCTCCTCATT------------
------CG------------------TGCCACCCTC-----------AC-CGGTGCATTG--TACCATGACCATCGGCGA
GGCT----CG-TGCCCATTACATGGATATGGTGCGGGAGGAGCAG---------TTCCGAGAGGCGCAGGCTGCCGCCGC
CTACAACCACCAACTCCTCCAGGAGCACCTGCAGGCAGAGGAGCAGCTCTTCGCCGGTAGGGTGATCGCCCCGGATGCGA
ACCTGGCGAAGCAGGTGGCGCTGCTCGACTCCTACCGCTCCG-----
>chr4D_1676
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-------------------------------------------------------------------AACGGTCAGTGCC
GCTCCAGAGCGTCAGTGCCTGCATTCATGCCCGGCCAGAGCGGACGCAACTGCTCACTGGCGCCAACATTGGAGTGGTGC
GCCAGCCGAGAGAGCGCCTCCCGCGCCGCTTCCCAGTGCAAGTGACTGCTCCACGTTCAAACGACACGACGGCCGCCCGT
CCGTTCGTCTGCCACCCACATTAATAACACGCA-GTTGCCGAGGCGCCTACTCCGGTGCGACTCGTCCGT-C-CTCTGTC
ACCCACCATTGCTATATAAATTGTTGTCCCGGCCATAGTCGCAATCATCTGCCCCTGATC-------CCTCTCCATACCA
-----------CTCCC-A-CCATGGATTCCTCCCCCGCCAAAGCTCTCTGGGATGGGCTGATGCTACACCAGAAGAAGGA
GTTGGCTGCCATTGCTGCCGGC------------AGGCAA------------CT---GGAGAATGACGACATCTCAA-TG
GAGGACATGGCCGAGGATGAGCCGGTGCCAC------------------------CCTCCTCCTCCTC------------
------GG------------------TGCCACCCTC-----------GTGCGGTGGATTG--CACCATGACCATCGGTGA
GGCT----TG-TGCCCATTACATGGACATGGTGCGGGAGGAGCAG---------TTTCGGGAGGCGCAAGCCGCCGCCGC
CTACAACCACCAACTCCTCCAGGAGCACCTACAGGCGGAGGAGCAGCTCTCCGCCGACAGGGCGATTGCATTGGATGCGG
ACCCAGCGGAGCAGGCAGTGCTGCTCGACACCTGCCGCACCG-----
>chr1A_1686
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-----------------------------------------------------------------------------GCC
GCTTCAGAGAGCCAGTGCCTGCATTCATGTCCGGCCAGAGCGGACACGGCCGCTCACTGGCGTCGGCATTGAAGCTACGC
GCCGGCCGAGAGAGCGCCGCCCCCGCCTCTTCCTTGTGTAGGTGACTGTTGCGCGTTCAAACGACACGACGGACGCTCGT
CCATCTGTCTGCCGCCCACATTGAAGGCACGCA-GTTACCGGGGC-TCTCCTTCGGCGCCACACGTCCGTCC-CTTTACC
GTCCACCATTGCTATATAAACCGAA--GCCGGCCATAGCCGCAGTCATCAACCTCCGATC-------CCTCTCCGCAACA
-----------CCCCC-A-CCATGGATTCCTCCCCCGCCAAAGCTCTCTGGGATGGGCTGACGCCGGACCAGAAGAAGGA
GATGGCCGCCATTGTTGCCGGTTGCCTGGCCAACAGGTAG------------CC---GGAGGACG---------------
-------CGACCGGCGACGAGTCGACGCCACCCTCCTCGTCCTCTGCGCCACCCTCCTCCTCCTCCTC------------
------TA------------------CGCCACCCTC-----------GT-CGGTGCACTG--CACCATGACCATCGGCGA
GGCC----CA-TGCCCATTACATGGACATGGTGCGGGAGGAGCAG---------TTCCGGAAGGCGC-AGCCGACGCCTC
CTACAACCACCACCTCCTCCAGGAGCACCGGAAGGCGGAGGAGCAACTCGCCGCCAGTAGGGCGTTCGCGCAGGACGCGG
AACTGGCGGAGCAGGAGGCGCTGCTTGAGTCCTACCGC---------
>chr6D_1702
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-------------AGTGGCCGCATTCATGCCCGGCAAAAACGGACACGACCGCTCACTTGCGACGGCATTGAAGTGGCGC
GCCAGCCGAGAGACCGCCGCCCGCGCCACTTCCCAGTGCAGGAAACTGCTATGCGTTCAAACGACATGACGG--------
CCGTCCATCTGCCGTCCGCACTGATGGTACGCG-GTTGCCAAGCCGTCTCCACCGACGCCATCTGTCCGTCC-CTCTGCC
GCCCACCATTGATATATAAACTGCTGCCCCAACCATAGCCGCAGTCATCTGCCTCTAA-C-------CCTCTCCGCACCA
-----------CTCCCGA-CCAAGGATTCCTCCGCCGTCAAAGCTCTCTGGAAAGGGCTGACGCTGGACTAGAAGAAGGA
GATGGCCGCCATTGCTACCGGC------------TGGCAGGTCAGCAGGGAGCCGAAGGAGGACGACGACGTCCCAA-TG
GAGGACGCCTCC-ACGATGAGCCAGCGCCAC------------------------CCTCCTCCTCCTC------------
------CG------------------CGCCACCCTC-----------GC-CGGTTCATTG--CACCATGACCATCGGCGA
GGCCGGCCCG-TGCCCATTACATGGACATGGTGCGGGAGGAGCAG---------TTCAGGGAGGCACAGGCCGACGACGC
CTACAACCACCAACTCCTCCAGGAGCACCTGTAGGCGGAGGAGCACCTCGCCGCCGGCAGGGCGATCACGCGGGACGCGG
ACCCGACAGAGCAGGAGGCATTGCTCGACTCTTACCGCTCCG-----
>chr4B_1766
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------------------------------------------------------------------------------GC
ACCGGCCGAGTGAGCGCCGCCCGCTCCGCTTCCCAGTGCACATGACTGCTCTGCGTTCAAACGACACG---------CCT
CCGTCCGTCTGTCGCCCATATTAATGACATGCCCGTTGCCAAGAC-GCTACTCCGGCTCCACCCGTCTATCC-TTCTGCC
GCCCATCATTGCTATATAAATTGTTGCCCGAGCCATAGCCGCAGTCATTCGCCTCCGATC-------CCTCTCCGCACCA
-----------CCCCC-A-TCATGGATTCCTCCCACGCCAAAGCTCTCTGGGACGGGCTGACGCCGGAGCAGAAGAACGA
GATGGCCGCCATTGTTGTTGGC------------TGGCAGGCCGGCAAACAACC---GGAAGACGGCGACGTCCCAA-TG
GAGGACGCAGCCAAAGACGAGCCG--------------------------------------------------------
-------G------------------CGCCACCATC-----------GC-CGGTGCATTG--CACCATGACCATCGTCAA
GGCC----CGTTGCCTATTACATGGACATGGTGCGGAAGGAGCGG---------TTCCGGGAGGCATAGGTCGATGCCGC
CTACAACCACCAACTCCTCCAGGAGCACCTACATGTGGAGGAGCAGCTCGCTGCCGGCATGGTGATCGCGCCGTACGCGG
ACCCAGTGGAGCAGGCGGCGCTGCTCGACTCCTACCGCTCCG-----
>chr1B_1790
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-----------------------CGCCGC-TTCTGGTGCAGGCGATTGCTCCGCGTTCAAAGG-CACAAGTGCCATCCGT
CTGTCCGTATGCCTCCCACATTAATGATATGCG-GTTGCCGAGGTGACTACTCCGGCGCCACCCGTCCGT-CTCTCTGCA
GCCCACCATTGCTATATAAACTGCTGCGCCGACCATAGCTGCAGTCATCCACCTCCATTC-------CCTTTCTCCTGTC
CACACCACTACTGCCC-A-CCGTGGCTTCCTAGCGCTCCAGCGTTCTTCAGGATGGGCGAACGACAAACCAA---AAGGA
GATGGCAGCCATTGCTGCCGAC------------TGACTGGCTGGCAGCCAGCC---AGAGGACGATGACGTCCCAA-TG
GAGAATGTGGTAGTCGACGATCCGGCGCCAA------------------------CCCCCTC---CTC------------
------CA------------------TGCCATCCTC-----------GC-TGGTGCATTG--CACCATGACCATCAGCGA
GGCC----CGT-GCCCAATACATGGACACGGTGAGGCAGAAGTGTGAGGAG-----------------------CGCCGC
CTACAACCACCAACTCCTCCAGGAGCACCTACAGGCAGAGGAGCAG----------------------------------
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>chr3D_1819
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----------------------------------------------------GCGTTCAAACGACACGACAGCCGTCTGT
CCATCCGTCTGCCACCCACATTAATGACACGTG-GTTGCCAGGGCAGCTACTCCGGTGCCACCCGTTTGTCC-CTCTGTC
GCCCATCATTGCTATATAAACTGCAGCCCCGACCATAGCCGCAGTCATCTGCCTTTGATCCCTTTCTCCTCTCCGCACCA
-----------GTCCC-A-CCATGGCTTCCTTGCACGCCAAAGCTCTCTGGGACGAGCTGCCGCCGGAGTATAAGAAGGA
GATGGCCACCATTGCTGCCGGC------------TGGCAGGCTGGCATGCAGCC---GGAGGATGACGACGTCCCAA-TG
GAGGACGCGGGCGACGATGAGCTGGCGCCAC------------------------CATTCTT---GTC------------
------CG------------------TGCCACCCTT-----------GC-CAGTGCATTG--TAACATGACCATCTGTGA
----GGCCCG-TACCCATTACATGGACATGATGCGCGAGGAGCGGGAGGCG-----------------------CAG-GC
CTACAGCCACCAGCTCCTCCAGGAGCAGCAGCAGGCAGAGGAGCAACTCGTCGCCGGCAGGGCGATCGCGCCAAGCGTGG
ACCTGGCGGAGCACGCGGCGCTGCTCGAGTCCTATCGCTCCG-----
>SNPs
-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S----------------S-----------------S--
--S-------S-SSS------------------------S----------------------------------S-----
------------SS------------------------------S---------S-S-----------------------
---------------S----------------------------------------------------------------
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------------------S----S------------------------------------S-------------S--SSS
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------------SSSSSSS-----------------S---S---------------------------S------S----
----------------------------------------------------S---------------------------
-----------------------------------------------------------------------------S--
--------------------------------------------------S-----------------------------
--------------------------S-----------------------------------------------------
----------------------------------------S---SSSSSSSSSSSSSSSSSSSSSSSS------------
----------------------------S---------------------------------------------------
-----------------S-----SS-----S---S---S--SSS-S--------SSS------S-----SS--S------
----S--SS--SS-S--S-S---SS---------S-S-----S----S-----------------S---S----------
---SSS-------S-----S-----------------------------S------S----------------S------
----------------------------S-S------------------S-----------S----S-------------
-------------------------------------------------------------------------------S
-------------------S----S----------------------S--------------------------------
-------------------------------------------------------------------S------------
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-----------------------------------------------------------------------------S--
----------------------------------------------------------------S---------------
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--------------------S-----------------------------------------------------------
-------------------------------------------S------------------------------------
---------------------------S--------------SSSSS
>forward_323
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---------------------------------------------------------------CCGCCACAGGTCTTGTA
AGT-----------------------------------------------------------------------------
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>reverse_2895
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--------------GTATGCGGTCCGAACGTACT----------------------------------------------
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