>input_sequence_81811
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------ATGCTTCGAGAAAATGATGATCCAT
GTGTAATTCTTAAAAAACTGTCTGCACACCAAGAATGGCGTCGCCTCCTTTTAAGGCTTCTATTGTTGGACAGGGACCTC
CTGAGAGCCAATGAGATCTGCTCGGTAAGATCGAAAATCAGTCCTGCCAGGAAACTATCATGAACTACGTACTTACCAAT
GATGATCATTCTGTTCGTAGTGTAATGGTCCATCAACTTGCCTCCAGCGCGCACATAGAAGACCAGCGGTATTGCAACGC
AAATCCTTAAATGAGAAGGGAGAAGGCCACATGGTGCGGGCCTCTGGGG-CAGCATACCATGACTGCATGACGGAGGTTC
TGAAGTGTTTTATTTTAACAGTAGAATTGTTTCTTGCTTGCTGA------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>chr3B_1_TraesCS3B01G206200
AGTTTATTTTGCTTGCCAAGTCCTTATTGTCCGGCTCTCGTCAACGGCAAGTCTTTGCCGAGTTCGAACTGTTACCGAGA
TCTGTACTCAGCTTACATAGTCATTACCAAGAGCCCGTGTTGGGGAACTCGGCGAAACGGTAAGCACTCGACACAGAGGG
ATTTTCCAGTAGTGTATGGACATGTCATTTACATAGGCATTTCGACAACGCCCGACTCACTTTAGCCAACCTCCTTGACA
ATATCCAGTC-GAAGTTAGGCTAGGGGCAATGGCGGGTGGGAGGGCTGGGGTCGCTACCAGTTGAGACGGTGCCTATTAG
TGGCATCCTATTGTGATTCTGGGTGTCTTTCATCTTTGAGTTTGTACAAACTCTTCTTTCTATCAATGCTTCAAGACGCA
AGGCTCTGCATTTTGTCCAAAGAA-AAAAAGGCATGGACGTCTAGTACTGGTCAAAATTCTTGATGTCAACTTGACAGTA
CAATGTACTAAAAGAAAGAACTGTAATTGGACGTCCAAATCATCTTTGAAACAATGTTGAGCAATGAAGGTACAGCATTT
ATGCCCATCACATCAGCTACCAAAATGGTATAATGGATACGCTGCAACAAGTTGACAACTGAAACGTTAGGAATAATCCC
AAGCATTACATCTAATCTACCTCATGTGTAAACACTTGTTCGTGTTGTTTTCATTTCACCCTTTTCAGCCATGATGATGT
GCCAGGGTCCTGGG-------TGAAGACCCTTCTCCGCCTCGGACTTGGCAGCGGCGACGCTTAGTGCCGTTTACCTCCC
GAGGGCGTTGTCATGGAGCTTAGGTGTCCTACGGCGTGTCGTGGTGGTGTTTTTAGGCCTACCTATGTGTTCTTTTCTTA
GAAACGTAGGCGTGTGCGTTTATGTTGTCCGGCTATCCTGGAATCTGCTTTGCAAAGGGCTTCCTC---AC---CTTATA
TCGTTCGGCCGTGTATTTTGATTTGTGCTTTATCTATAAAGTGGGGTAAGAGCACATGCTTCGAGAAAATGATGATCCAT
GTGTAATTCTTAAAAAACTGTCTGCACACCAAGAATGGCGTCGCCTCCTTTTAAGGCTTCTATTGTTGGACAGGGACCTC
CTGAGAGCCAATGAGATCTGCTCGGTAAGATCGAAAATCAGTCCTGCCAGGAAACTATCATGAACTACGTACTTACCAAT
GATGATCATTCTGTTCGTAGTGTAATGGTCCATCAACTTGCCTCCAGCGCGCACATAGAAGACCAGCGGTATTGCAACGC
AAATCCTTAAATGAGAAGGGAGAAGGCCACATGGTGCGGGCCTCTGGGG-CAGCATACCATGACTGCATGACGGAGGTTC
TGAAGTGTTTTATTTTAACAGTAGAATTGTTTCTTGCTTGCTGATCTCAAGTGTTAAGTCAA-AAACTCAAAACAGAGAA
TATGAGACAAAATTAATCACATTGCAGCTGTTTTATACTATGTGAAATCTGTCTGATCATATGATTAACAA---------
GTTTAGTGTCAAGTAAAACACATTGATGATAGAATGATACCAGTATC---------TTCCTTTTGTGGTCTTTCAGATAA
CTACTAGGATAAACTAAGAAAATGTACGTCTGAATGCAAGAGCTCAGAG--CGAACCTAGAT------GGTGCACTTATT
ACATGTACATGGAGCGCCAACTGGCAACATGTTTGAGTGGTCACAGCAAAGGACTTGTGTGGCACCTGCAAATTGAGCAC
ATGATGGCTGTCTTGTCTTGCTAGGTTGTCCGTCATTGAAGAAAGCAATTCGGTTATGAGATGATTACCCAGAAACCAGT
GAACTGGACTGTGCACCAGAGCTGATGGAAGCGTCTTAACATCCTCTACGGATGCTTATGTTT-----TTTCTTCTTTTT
CTTTAGATGACACATTGCTTGTGTTAATACGGTGGTGGTATCAGTGAGCTATGCACCAAACAGACAACATGAGAGGACAG
AAATAGTGAAATAATCGATGTGGTTGAGCTGGGCCTGCTGGCGTTCATTTATGGTAGCAACTCGCCAGCAAATCATTTAG
GCCACACAGTGGATTTTGAGATCATACTGGTGATTATGTGGCCGGAGATCTGATTCATGGGCTTCTCACAACAGTGAGCG
CTTCTGTAGCCCTATAGTTTCCTTGGGCGTTTTATGTGGCCTCATCAACCGAATTACTGGAGCAACGACTTGTTTTTCTG
AAGGTTTTTTTCGAAAAGGGGGTTTACTCCAGCCTCTGCATCATTCTGATGCATACGGCCAATATTATTAATAAAAAAAG
ATCCAGCAACAATCTCCAAGTCTCGCAGAAGGAAGTAAACAAATGCTCACAAGAGCGAAACAAAAAAAGGCCAAGCCACA
ACCGACTGGCAAAAAAATATAGGAGCACTATATGCC
>chr3A_9
--------TTGCTTGCCGAGTCCTTATTGTCCGGCTC--GTCAATGGCAAGTCTCTGCCGAGTTCGAACTGTTACCGAGA
TCTGTACTCAGCTTACATAGTCATTACCGAGAGCCTGTGTTCGGGAACTCGGCGAAACGGTAAGCACTCGGCACAGAGGG
ATTTTCCAGTAGTGTATGGACATGTCGATTACATAGGCATTTCGACAACGCCCGACTCACTTTAGCCGACCTCCTTGACA
ATATCCAGTGGGAAGTTAGGCTAGGGGCAATGGCGGGTGCGAGGGCTGGGGTCGCTACCAGTTGAGGCGGTGCCTATTAG
TAGCGTCCTATTGTAATTCTGGGTGTCTTTCATCTTTGAGTTTGTACAAACTCTTCTTTCTATCAATGCATCGAGACGCA
AGGCTCTGCATTTTCTCGAAAGAACAAAAAGGCATGGACGTCTAGTACTGGTCGGAATTCTTGATGTCAACTTGACAGTA
CAATGTACTAAAAGAAAGAACTGTAATTGGACGTCCAAATCATCTTTGAAACAATGTTGAGCAATCAAGGTACAGCATTT
ATGCCCATCACATCAGCTACCAAAATGGTATAATGGATACGCTGCAACAAGTTGACAACTGAAATGTTAGGAATAATCCC
AAGCATTGCATGTAATCTACCTCATGTGTAAACACTTGTTCGTGTTGTTTTCATTTCACCCTTTTCAGCCATGATGATGT
GCCAGGGTCTTGGG-------TGAAGACCCTTCTCCGCCTCGGACTTGGCAGCAGCGACGCTTAGCGCCGTTTACCTCCT
GAGGGCGTTGTCATGGAGTTTAGGTGTCCTAGGGCGTGTCGTGGTGATGTTTTTAGGCCTACCTATGTGTTCTTTTCTCA
GAAACGGAGGCGTTTGCGTTTATGTTGTCCGGCTATCCTGGATTCTGCTTTGCAAAGGGCTTCGTCATTAC---CTTATA
TAGTTCGGCCGTGTATTTTGGTTTGTGC----------AAGCGGGGAAAGAGTATATGCTTCGAGAAAATGATGATCCAT
GTGTAATTCTTAAAAAT-TGTCTGCACACCAAGAATGGCGTCGCCTCCTTTTAAGGCT-CTGTTGTTGGACAGGGACCTC
CTGAGAGCCAATGATATCTGCTCGGTAAGATCGAAACTCAGTCCTGCCAGGAAACTATCATGAACTACGTACTTACCAAT
GATGATTATTCTGTTCGTAGTGCAATGGTCCGTAAACTTGCCTCCAGCACGCACAATAAAACCCAGCGGTATTGCAACGC
AAATCCTTAAATGAGAAGGGAGAAGGCCACATGGTGCGGGCCTCTGGGAACAGTATACCATGACTGCATGAGAGTGGTTC
TGAAGTGTTT-----TAATAGTAGAATTGTTTCTTGCTAGCTGATCTCAAGTGTTTAAGTTGGAAACTCGAAACAGAGAC
TATGAAACAAAATTAATTACATTGCAGCTGTTTTATACTATGTGAAATCTGTCTGATCATATGATTAACAA---------
GTTTAGTGTCAACTAAAACACATTGATGATAGAATGATACTAGTATC---------TT----TTGTTGTCTTTCAGATAA
CTACTATGATAAACTAAGAAAATGTACGCCTGAATGCAAGAGCTCAGAG--CGAACCTAGATGGCATAGGTGCACTTATT
ACATGTACATGGAGCGCCAACTGGCAACATGTTTGAGTGGTCACAGCAAAGGACTTGTGTGGCACCTGCAAATTGAGCAC
ATGATGGCTGTCTTGTCTTGCTAGGTTGTCCGTCATTGAAGAAAGCAATTCGGTTATGAGATGATCACCCAGAAACCAGT
GAACTGGACTGTGCACCAGAGCTGATGGAAGCGTCTTAAAATCCTCTACGAATGCTTGTGTGT-----TTT-TTCTTTTT
CTTTAGATGACAAA-TGCTTGTGTTAATACGGTGGTGGTATCAGTGAGCTAAGCACCGAACAGACAACATGAGAGGACAG
AAATAGTGAAATAATCGATGTGGTTGAGCTGGGCCTGCTGGCGTTCATTTATGGTAGCAACTCGCCAGCAAATCATTTAG
GCCACACAGTGGATTTTGAGATCATACTGGTGGTTATGTGGCCGGAGATCTGATTCATGGGTTTCTCACAACAGTGGGCT
CTTCTGTAGCCCTATAGTTTCGTTGGGCGTTTTATGTGGCCTCATCAACCGAATTACTGGAGCAACGACT----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>chr3D_312
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------CCTATTAG
TGGCATCCTATTGTAATTCTGGGTGTCTTTCATCTTTGAGTTTGTACAAACTCTTCTTTCTATCAATGCATCGAGACGCA
AGGCTCTGCATTTTCTCGAAAGAACAAAAAGGCATGGACGTCTAGTACTGGTCGAAATTCTTGATGTCAACTTGACAGTA
CAATGTACTAAAAGAAAGAACTGTAATTGGACGTCCAAATCATCTTTGAAACAATGTTGAGCAATGAAGGTACAGCATTT
ATGCCCATCACATCAGCTACCAAAATGGTATAATGCATACGCTGCAACAAGTTGACAACTGAAACGTTAGGAATAATCCC
AAGCATTACATCTAATCTACCTCATGTGTAAACACTTGTTCGTGTTGTTCTCATTTCACCCTTTTCAGCCATGATGATGT
GCCAGGGTCCTGGGTGAAGACTGAAGACCCTTCTCCACCTCGGACTTGGCAGCAGTGACGCTTAGCGCCGTTTACCTCCT
GAGGGCGTTGTCATGGAGCTTAGGTATCCTAGGGCGTGTCGTGGTGGTG-TTTTAGGCCTACCTATGTGTTCTTTTCTCA
GAAACGAAGGCGTTTGCATTTATGTTGTCCGGCTATCCTGGAATCTGCTTTGCAAAGGGCTTCCTC---ATTGTCTTATA
TCGTTCGGCCGTGTATTTTGGTTTGTGCTTTATCTATAAAATGGGGCAAGAGCATATGCTTTGAGAAAATGATGATCCAT
GTGTAATTCTTAAAAA-CTGTCTGCACACCAAGAATGGCGTCGCCTCCTTTTAAGGCTTCTGTTGTTGGACAGGGACCTC
GTGAGAGCCAATGATATCTGCTCTATAAGATCGAAAATCAGTCCTGCCAGGAAACTATCATGAACTACGTACTTACCAAT
GATGATTATTCTGTTCGTAGTGTAATGGTCCGTCAACTTGCCTCCAGCACGCACATAGAAACCCAGCGGTATTGCAACGC
AAATCCTTAAATAAGAAGGGAGAAGGCCACATGGTGCGGGCCTCTGGGGACAGTATACCATGACTGCATGAC----GTTC
TGAAGTGTTT-----TAATAGTAGAATTGTTTCCTGCTTGCTGATCTCAAGTGTTGAAGTTGGAAACTCGAAACAGAGAC
TATGAAACAATATTCATTACATTGCAGCTGTTTTATACTATGTGAAATCTGTCTGATCATATGATTAAGAATTATCTCGG
GTTTAGTGTCAAGTAAAACACATTGATGATAGAAAGAATGTTACTAGTAATCTTATTT----TTGTTGTCCTTCAGATAA
CTACTAGGATAAACTAAGAA--TGTACGTCTGAATGCAAGAGCTCACAGAACGAACCTAGAT------GGTGCACTTATT
ACATGTACATGGAGCGCCAACTGGCAACATGTTTGGGTGGTCACAGCAAAGGACTTGTGTGGCACCTGCAAATTGAGCAC
ATGATGGCTGTCTTGTCTTGCTAGGTTGTCCGTCATTGAAGAAAGCAATTCGGTTATGAGATGATTACCTAGAGGCCGGT
GAACTGGACCGTGCACCAGAGCTGATGGAAGCGTCTTAACATCCTCTCCGAATGCTTATGTGTTTTTCTTT-TTCTTTTT
CTTTAGATGACAAA-TGCTTGTGTTAATACGGTGGTGGTATCAGTGAGCTAAGCACCGAACAGACAACATGAGAGGACAG
AAATAGTGAAATAATCGATGTGGTTGAGCTGGGCCTGCTGGCGTTCATTTATGGTAGCAACTCGCCAGAAAATCATTTAG
GCCACACAGTGGATTTTGAGATCATACTGGTGGTTATGTGGCCGGAGATCTGATTCATGGGCTTCTCACAACAGTGAGCT
CTTCTGTAGCCATATAGTTTCCTTGGGCGTTTTATGTGGCCTCATCAACCGAATTACTGGAGCAACGACT----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>SNPs
SSSSSSSS---------S-------------------SS-----S---------S-------------------------
----------------------------S------S-----S----------------------------S---------
--------------------------SS---------------------------------------S------------
---------S-----------------------------S--------------------------S-------------
--------------S------------------------------------------------------S--S-------
--------------S--S-----------------------------------S--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------S-----------S-------------S
-------------------------------S----------------------------------------------S-
------S------S------------------------------------------------------------------
--------------------S-------------------------S-------S-------------------------
----------------S--------------------------------------------S------------------
--------------S-----------------------------------------------------------------
------S------------------------S----------------S-----------SS------------------
-----------------------------------------------------S------------------S-S-----
----------SSSSS---S------------------------------------S-SSSSS-------S---------S
-----S-----------S--------------------------------------------------------------
----------------------------------------S-----------------SSSS----S-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------S----------S---------S--------
------------S-S------------------------------------S-----S----------------------
--------------------------------------------------------------------------------
--------------------------------S----------------------------------------------S
----------------------------------------------------------------------SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_415
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------ACGCA
AGGCTCTGCATTTTG-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>reverse_2259
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------GGGGTTTACTCCAGCCTCTG------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
