>input_sequence_81781
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-------------------ATGGCGGCGGCGAGCCTGAGGAAGGGGAACGCGAGGCTGCCGCCGGAGGTGAACAGGGCGC
TGTTCGTGCGGAACCTGCCGTTCAACATCTCGAGCGAGGAGATGTACGACATCTTCGGCAAGTACGGGGCGATCCGGCAG
ATCCGACTGGGCAACGCCAAGGACACGCGGGGGACGGCGTACGTGGTGTACGAGGACATCTACGACGCCAAGAACGCCGT
CGACCACCTCTCGGGCTTCAACGTCGCCAACCGCTACCTCATCGTGCTCTACTCGCAGCTCAACAGGATGTCCAAGAAGA
CGGACATCAAGAAGAAGGAGGACGAGATCACCAGGCTCCAGGAGAAGTACGGCGTCGGATCCAAGACCCCCTCCGCCAAC
GACGCCTGA-----------------------------------------------------------------------
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>chr5D_1_TraesCS5D01G480000
TTGCACTCTACAAGCTAAAAGTGCTCATGAATCATAAATAACAGC-GGAAGTAAAGTGCATGTCAAACTAGAAATTCTCC
CTTCTTTCCAC--------GACTTTGCACACCAACTAACATCCCAGC-----TAATTCAACAAAGTTACCCATGATATA-
-----TACTAACACAAGCTTAAGCAACAACCACACAAGGAAGCTAAATGTTTAAGTGGGAAAGGAATTCAGGGTTGCAGA
ATTAGCCACGGAAATAAGCATACTATCGGCAATTACGATAACCAATCGCCGGGCATACATCCAGTCCTCACCTGTACTCG
CCAGTGCAGAACTGCCTGCGACCAAAAGAACAAACAGAGCAGAGATCCGTCAGCAGCAGCAGCGATTAATTAAACGGAAC
CTAGGGTTTAAGTGCAGGGCAGCGAGGGCGGAG---CTACCTGAAGTTCTCGGCGGTCTTGGGGACGACGTCGGCGAAGA
GCTCCATCTTGATGCGGCCGGCCGGGATGGACCCGATGGTCACGTCGAAGAACACCACCGGGTTCTTCGGGTTCGGCGGC
CGCTGGTGCCACTCCACCGACGACGGCGCCGCGGCCGGCGGCGTGGGCCCCGCAGATATGGCGGACGCCATGCCTCTCGG
CGCTCG-----------C---GGAAGCTTCCGGAAGGTTCGGGAGCCGAGCGGGGGAGA------GCGGAAGAAGCTTCG
AGTTTCAGCCGAGGGAGAGGCCGGCGGCGCGCAAGGAGGACGGAGGCGGGCCAATATGCGCCAAGATTCGTGCAG--GAG
TCCCGAACGTTCGAGA-------C-CCCTCGGCTCAGATCCCGCTCACTGCCGTGTGGGTCCAACGTCGACCTCCGGGCC
CACAGGTCAGCCGGCTATCCGTTCCCAAGTGAAGTCGGTAATCATCATCGTCCTAATAAAAAGGAGGGGAAGAGA-AGGA
AACTACCCCCAAATCGATTTGGACCAGACACCACCGAGCCCCCAAC--CAGACCCAGACCAAACCCTAGGCGGCGGCGGC
GGCGGCGGCGGA---AGCGATGGCGGCGGCGAGCCTGAGGAAGGGGAACGCGAGGCTGCCGCCGGAGGTGAACAGGGCGC
TGTTCGTGCGGAACCTGCCGTTCAACATCTCGAGCGAGGAGATGTACGACATCTTCGGCAAGTACGGGGCGATCCGGCAG
ATCCGACTGGGCAACGCCAAGGACACGCGGGGGACGGCGTACGTGGTGTACGAGGACATCTACGACGCCAAGAACGCCGT
CGACCACCTCTCGGGCTTCAACGTCGCCAACCGCTACCTCATCGTGCTCTACTCGCAGCTCAACAGGATGTCCAAGAAGA
CGGACATCAAGAAGAAGGAGGACGAGATCACCAGGCTCCAGGAGAAGTACGGCGTCGGATCCAAGACCCCCTCCGCCAAC
GACGCCTGATCCTTGGTGCCCCGT--GTTTTTTTTTAGTTAGAAATCGTCGAGAGAAACTGTTGAATCGGAGATCGGTCC
TGTAATCTGTGCTTGCCGCGGTATGTTTGTGTTTGCGGTGGTTCCATATTGAT--GATGAACATAGCTCG----------
---------------------------GATGGAACTTGAATTTGATACTTTAATTAGTAGGTATATCTG--TGCTGTGGG
TGTCAATGGTCTGATAAACAGGGGCGTTCGCTTGAGATTTTTGATATGTGCATGATTGTTCAGATACATTAAGCAGCTGG
AAT---------------------------ATATTGAGAGGATTCGTGCTGCTTGATGTTCCAAATTAC---TACTGATT
TAGGTGGGTGTATTTGCATTTTGATGTTGCTCTGATGTTCTTGCTGTGTGCTTATCAGGCTGTTGTGTGTTTGCTGTTAT
GTTGGA--------------TGTGTATGAATGTATGATTATTGCTTGTTTGGCCGT------------------AAAAGA
TGACTCCAGAGATGGGTCACTTTTGTATATGTTATTAACATGTACCAATT---------TATGTTTCTTTGGCTGTGATT
AGAGCTAGAGTGTAGTTTGTTAGTGCTCATGCTATGTGATTTTA-CCTGTTATGGTTTGCTAGTGCTGATTGTGCTATTT
CAACTTGCTGCTATGTAGTATTCGTGTTTTCAT-GGGTTTCTTGAGCGATGATGGCTTGTCTAGTTCAAGCCTGCTTTCC
TCTAGTTTACTTGGATCTGTCATGTTCATTGTGGGATGGCTGTTTCTTAATTTTGCAGAGTATGATTTTGAGGGGACTCA
CAATCATGAAATCTTGGATCTGGGTAGCAAATTAGC--ATATCTTACTGTTGTAAATTTGTAACAGCTATGTGCATTGTG
GGGATCAGTATGTTTTGGATTTGTAGTGTGGGTCTAGGAGCCGATGAACTGTCATAAATTAAGTGCATCATGGGATCGCC
GTTTCTTGATTTGTGAAGTGTGATTCTAGGAGCCTGTGGACAATCTTGAATTCGGAGACTACATCTGAATTGGTACTTTT
GGCAACG
>chr5A_1
TTGCACTCTACAAGCTAAAATTGCCCATCAATCATAACAAACAGTGGGAAGTAGAGTGCATGTCAAGCCAGAAATTCATC
CTTGTTCGTTCTTTCTATGGACTTTGGGCACCAACTAATCCCCCAGT-----TAATTTAACAAAGTTACCCATGATATA-
-----TACTAACACAAGCTTTTGCAACACTCACACAAGGAGGCTAAATGTTTAAGTGGGACAGGAATTCAGGGTTGCAGA
ATAAGCCACAGAAATAAGCATACTATCGGCAACTACAATAACCA---GCCGGGCATGCATCTAGTCCTCACCTGTACTCG
CCAGTGCAGAACTGCCTGCGACCAAAAGAACAAACAGAGCAGAGATCCGTCAGTAGCAGAAGCGATGAATTAAACGGAAC
CTAGGGTTTAAGGGCGGGGCGGCGAGGGTGCAG---CTACCTGAAGTTCTCGGCGGTCTTGGGGACGATGTCGGCGAAGA
GCTCCATCTTGATGCGCCCGGCCGGGATGGACCCGATGGTCACGTCGAAGAACACCACCGGGTTCTTGGGGTTCGGCGGC
CGCTGGTGCCACTCCACCGACGACGGCGCCGCGGCCGGCGGCGTGGGCCCCGCGGAGATGGCCGACGCCATGCCGCTCGG
CTCTCGGGGCAACTGCGCGCTGGAAGCTTCTGGAAGGTTCGGGGGGCGAGCGGGGGCGCGGAAG---------AGCTTCG
AGTTTCAGCCGAGGGAGAGGCCGGCGGCGCGCTAGGAGGACGGAGGCGGGCCAATATGCGCCAAGATTCGTGCA--AGAG
TCCTGAACGTTCGAGAGTCGAAACTCCCTAGGCTCAGACATGTCTCACCGCCATGTGGGTCCGGCTTCGGCGTCCGGGCC
CACACGTCAGCCGGCTATCCGTTCCGAGGTCGGTAAGATATGTCCCCCG-------TAATAAGGAGGAGAGGAGGGAGGA
AACTACCCCCAAATCGATTTGGTCCAGACACCACCGAGCCCCCAAC--CAGACCCAGACCAAACCCTAGGCGGCGGCG--
----GCGGCGGC---GGAGATGGCGGCGGCGAGCCTGAGGAAGGGGAACGCGAGGCTGCCGCCGGAGGTGAACCGGGCGC
TGTTCGTGCGGAACCTGCCGTTCAACATCTCGAGCGAGGAGATGTACGACATCTTCGGCAAGTACGGGGCGATCCGGCAG
ATCCGGCTGGGCAACGCCAAGGACACGCGGGGGACGGCGTACGTGGTGTACGAGGACATCTACGACGCCAAGAACGCCGT
CGACCACCTCTCGGGCTTCAACGTCGCCAACCGCTACCTCATCGTGCTCTACTCGCAGCTCAACAGGATGTCCAAGAAGA
CGGACATCAAGAAGAAGGAGGACGAGATCACCAGGCTCCAGGAGAAGTATGGCGTCGGATCCAAGACCCCCTCCGCCAAC
GACGCCTGAACCATGGATGCCTGCCCGTGTTTTTCTAGTTAGAAATCGTCGAGAGAAACTGTTGAATCGGAGATCGGTCC
TGTAATCTGTGCTTGCCGCGGTATGTTTGTGTTTGCGGTGGTTCCATATTGATATGATGAACATGACTC--TGATTGATA
GCATCTACTTGGGTTGTCCTGTGTTCTTGTGTAACTTGAATTTGATACTTTGATTAGTAGGTATATCTATATGCTGTGGA
TGTCGATGATATGTTAAACAGGGTTATTCACTTGAAAATTGTGATATGTGCATGATTGCTCAGATACATTAAGCAACTGG
AACCTATT----TAGAGAATCAAATATGTGCTATAGCGAGGATCTGTTCTGCTTGATGTTACAAATTACTAGTACTGATT
TAGGTGGGTGTATTTGCACTTTGGTGTTGCTCTCGTGTTCTTGCTGTGTGCTTATAAGGCTGTGGTGTGTTTGTTATGTT
GGGTGTGTATATTTAATTATTGTGTATCAATATATGATTATTGCTTGTTTGAACATCTGGGGCTCCCTCAGTGAAAGATA
TGACTCCAGGGATGAGTTACTTTTGTTTATCTTATTACCATGTACCAATA---------TATGTTTCATTGGCTGTGACT
AGATGCC-AGTGTAGTTTGTTAGTGCTCATGCTATGTGATCTTACCCTGTTATGGTTTGCTAGTGCTGATTGTGCTATGC
AA-------------------TAGTGTTTTTCACGGGTTTCTTAAGCGATGATGGCTTGTCTAGTTCAAGCCTGCTTTCC
TCTAGTTTACTTGGATCTGTCATGTTCATTGTGGGATGGCTGTTTCTTAAATTTGCAGAGAATGATCTTGAGGGGACTCA
CAATCCTGAAATCTTGGATTTTGGTAGCAAATTAGTATATATCTTACTGTTGTAAATTTGTAACAGTTATGTGCATTGTG
GGGATCAGTCTGTTCTGGATTGATAGTGTGGGTCTAGAAGTTGACGAACTGTCTTGAATTACGTGCATCGTGGGATCACT
GTCTCTTGATTTGTAAAGTGTGATTTTAGGAGCCTGTGGACAATCTTGAATTTGAAGACTACATCTGAATTAGTACTTTC
GGCAACG
>chr5B_1
TTGCACTCTACAAGCTAAAATTGCTCATCAATCATAACAAACAGC-GGAAGTAAAGTGCAAGTCAAACTAGAAATTCTTC
TTT----CCAT--------GACTTTGCACACCAACTAATCTCTCCCAGATAATAATTTAACAATATTACCCATGATATGC
ACTCCTACTAACACAAGCTTAAGCAACACTCACACAAGGAAGCTAAATGTTTAAGCGGGAAAGGAATTCAGGGTTGCAGA
ATTAGCCTCAGAAATAAGCAT---ATCGGCAGTTACGATAACCAATTTCCGGGCATGCATCCAATCCTCACCTGTACTCG
CCGGTGCAGAACTGCCTGCGACCAAAAGAACAAACA---CAGAGATCCGTC---AGCAGAAGCGATTAATTAAACGGAG-
CTAGGGTTTAAGGTTGGGGCGGCCAGGGCGCAGTTACTACCTGAAGTTCTCGGCGGTCTTGGGGACGATGTCGGCGAAGA
GCTCCATCTTGATGCGGCCGGCCGGGATGGACCCGATGGTCACGTCGAAGAACACCACCGGGTTCTTCGGGTTCGGCGGC
CGCTGGTGCCACTCCACCGACGCCGCCGCCGCGGCCGGCGGCGTGGGCCCCGCGGATATGGCCGACGCCATGCCGCTCGG
CGCTCGAGGTACGCTCGC---GGAAGCTTCTGGAAGGTTCGGGAGCCGAGCCTGGGGGGGGGGGTGCGGAAGAAGCTTCG
AGTTCGAGCCGAGGGAGAGGCCGGCGGCGCGCAAGGAGGACGGAGGCGGGCCAATATGCGCCAAGATTCGTGCCAGAGAG
TCCTGAACGTTCGAGAGTCGAGAC-CCCGCGGCTGAGATCCGTCTCACCGCCATGTGGGTCCAGAGCCGGTCTCCGGGGC
CACACGTCAGCCGGGTATCCGTTCCGAAGTCGGTAAGATATCTCCACCG-------TAATAAGGAGGAGAGGAGGGAGGC
AACCACCCCCAAATCGATTTGGTCCAGACACCACCGAGCCCCCAACCACAGACCGAAACCAAACCCTAGGCGGCGGCG--
----GCGGAGGCGGAGGAGATGGCGGCGGCGAGCCTGAGGAAGGGGAACGCGAGGCTGCCGCCGGAGGTGAACAGGGCGC
TGTTCGTGCGGAACCTGCCGTTCAACATCTCGAGCGAGGAGATGTACGACATCTTCGGCAAGTACGGGGCGATCCGGCAG
ATCCGGCTGGGCAACGCCAAGGACACGCGGGGGACGGCGTACGTGGTGTACGAGGACATCTACGACGCCAAGAACGCCGT
CGACCACCTCTCGGGCTTCAACGTCGCCAACCGCTACCTCATCGTGCTCTACTCGCAGCTCAACAGGATGTCCAAGAAGA
CGGACATCAAGAAGAAGGAGGACGAGATCACCAGGCTCCAGGAGAAGTACGGCGTCGGATCCAAGACCCCCTCCGCCAAC
GACGCCTGATCCTGCGCGTGTTTG-----TTTATTTAGTTAGAAATCGTCGAGGGAAACTGTTGAGTCGGATATCGGTCC
TGTAATCTGTGCTTGCCGCGGTATGTTTGTGTTTGCGGTGGTTCCATATCGATATGATGAACATGACTCGTTGATTCATA
GCATCTGCTTGGGTTGTCCTGTGCTTTGATGTAACTTGAATTTGATACTTTGATTAGTAGGTATATT--TATGCTGTGGA
TGTCAATGATCTGTTAAACGGGGGTGTTCGCTTGAAATTTGTGATATGTGCATGATTGTTCAGATACATGGAGCGGCCGA
AATCTATTTAGGTAGAGAACCAAATGTGTGATATGGTGAGGATTCGTG-----------TACAAATTACCAGTACTGATT
TAGGTGGGTGTATTTGCACTTTGATGTTGCTCTGATGTTCTTGCTGTGAGCTTATAAGGCTGTGGTGTGTTTGCTGTTAT
CTTGGA--------------TGTGTATGAATATATGATTATTGCTTGTTTGAACATCTGTGGCTCCCTCAGCAAAAGATA
TGACTCCAGGTATGG-TCACTTTTGTTTATCTTATTACCATGTACTACCAATATACTCCTATGTTTCATTGGCTGTGACT
AGATGCC-AGTGTAGTTTGTTAGTACTCATGCTATGTGATTTTA-CCTTTTATGGTTTGCTAATGCTGATTGTGCGATGC
AAACTTGCTGCTGTGTAGTATTAGTGTTTTCAT-GGGTTTCTTAAGCGATGATGGCTTGTCTAGTTCAAGCCTG------
-------------------TCATGTTCATTGTGGGATGGCTGTTTTTTGAATTTGCAGAG--TGATATTGAGGGGACTCA
AAATCCTGAAATCTTGGATTTTGGTAGCAAATTAGC--GTATCTTTCTGCTGTAAATTTGTAACAGCTATGTGCATTTTG
GGGATCAGTATGTTCTGGATTTGTAGTGTGGGTCTAGGAGTTGATGAACTGTCTTGAATTACGTGCAT------------
-TTTCTTGATTTGTAAAGTGCGATTCTAGGAGCCTGTGGACAATCTTGAATTTGAAGACTACATCTGAATTAGTACTTTC
GGCAACG
>chr6B_1731
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----------------------GATGTTGCTCTCGTGTTCTTGCTGTGAGCTTATAAGGCTGTGGTGTGTTTGCTGTTAT
CTTGGA--------------TGTGTATGAATACATGATTATTGCTTGTTTGAACATCTGGGGCTCCCTCAGCAAAAGATA
TGACTCCAGGTATGGGTCACTTTTGTTTATCTTAATACCACGTACTACCAATATACTCCTATGTTTCATTGGCTGTGACT
AGATGCC-AGTGTAGTTTGTTAGTACTCATGCTATGTGATTTTA-CCTGTTATGGTTTGCTAATGTTGATTGTGCTATGC
AAACTTGCTGCTCTGTTGTATTAGTGTTTTCAT-GGGTTCCTTAAGCGATGATGGCTTGTCTAGTTCAAGCCTG------
-------------------TCATGTTCATTGTGGGATGGCTGTTTTTTGAATTTGCAGAG--TGATATTGAGGGGACTCA
AAATCCTGAAATCTTGGATTTTGGTAGCAAATTAGC--GTATCTTACTGTTGTAAATTTGTAACAGCTGTGTGCATTTTG
GGGATCAGTATGTTCTGGATTTGTAGTGTGGGTCTAGGAGTTGATGAACTGTCTTGAATTACGTGCAT------------
-TTTCTTGATTTGTAAAGTGCGATTCTAGGAGCCTGTGGACAATCTTGAATTTGAAGACTACATCTGAATTAGTACTTTC
GGCAACG
>SNPs
--------------------S-------S--------SS---------------------------------------S-
---S--S-------------------------------SS------S----------S----------------------
----------------------------SS--------------------------------------------------
---------S------------------------------------S---------S-----------------------
-----------------------------------------------------S-----S--------------------
------------S--S----S---------S-------------------------------------S-----------
--------------------------------------------------------------------------------
-----------------------------------------------------S--------S-----------S-----
------------------------------S-------------------------S-S---------------------
--------------------------------------------------------------------------S-----
---S-------------------------------------SS-----S---S----------S-----S----------
----S--------------------S----SSSSSS-S--SSSSS-SSSSSSSSSS---S-------S--S---S-----
----------------------S-------------------------------------------------------SS
SSSS-------S---S-S--------------------------------------------------------------
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-----S--------------------------------------------------------------------------
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----------------S-S--S-S----S---------------------------------------------------
----------------------------------------------------------------SS--------------
-------------------------------S-------------------S----------------S----------S
--------S----S----------S----------S----S---------------------------------------
----------------------------------S-S-----------------------S-------------------
------------------S------------------------------------S-------S----------------
-------------------------------S-------------------SS-S---------------------S-S-
---------S----------------S---S------S-----------S-----------------S----------S-
---SSSSS----------------------------------------------------------------------SS
S-----------S---------S--------------------S------------------------------------
--------------------------------------------------S---------S-----S-------------
-----S-------------S-S----------------------------------------------------------
--------------S-------------------------SS-----------S-S-----S-------S-------S-S
--------------S-------------------------------------S-S----------------S-------S
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>forward_374
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----------------------------------CAGAGCAGAGATCCGTCAGC--------------------------
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>reverse_2470
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---------------------------------------------------------------------ATGGGATCGCC
GTTTCTTGA-----------------------------------------------------------------------
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