>input_sequence_81775
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------ATGGCGGCGGCGAGCCTGAGGAAGGGGAACGCGAGGCTGCCGCCGGAGGTGAACCGGGCGCTGTTCGTGCGGA
ACCTGCCGTTCAACATCTCGAGCGAGGAGATGTACGACATCTTCGGCAAGTACGGGGCGATCCGGCAGATCCGGCTGGGC
AACGCCAAGGACACGCGGGGGACGGCGTACGTGGTGTACGAGGACATCTACGACGCCAAGAACGCCGTCGACCACCTCTC
GGGCTTCAACGTCGCCAACCGCTACCTCATCGTGCTCTACTCGCAGCTCAACAGGATGTCCAAGAAGACGGACATCAAGA
AGAAGGAGGACGAGATCACCAGGCTCCAGGAGAAGTATGGCGTCGGATCCAAGACCCCCTCCGCCAACGACGCCTGA---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>chr5A_1_TraesCS5A01G467100
GCTAAAATTGCCCATCAATCATAACAAACAGTGGGAAGTAGAGTGCATGTCAAGCCAGAAATTCA----TCCTTGTTCGT
TCTTTCTATGGACTTTGGGCACCAACTAATCCCCCAGT-----TAATTTAACAAAGTTACCCATGATATA------TACT
AACACAAGCTTTTGCAACACTCACACAAGGAGGCTAAATGTTTAAGTGGGACAGGAATTCAGGGTTGCAGAATAAGCCAC
AGAAATAAGCATACTATCGGCAACTACAATAACCA---GCCGGGCATGCATCTAGTCCTCACCTGTACTCGCCAGTGCAG
AACTGCCTGCGACCAAAAGAACAAACAGAGCAGAGATCCGTCAGTAGCAGAAGCGATGAATTAAACGGAACCTAGGGTTT
AAGGGCGGGGCGGCGAGGGTGCAG---CTACCTGAAGTTCTCGGCGGTCTTGGGGACGATGTCGGCGAAGAGCTCCATCT
TGATGCGCCCGGCCGGGATGGACCCGATGGTCACGTCGAAGAACACCACCGGGTTCTTGGGGTTCGGCGGCCGCTGGTGC
CACTCCACCGACGACGGCGCCGCGGCCGGCGGCGTGGGCCCCGCGGAGATGGCCGACGCCATGCCGCTCGGCTCTCGGGG
CAACTGCGCGCTGGAAGCTTCTGGAAGGTTCGGGGGGCGAGCGGGGGCGCGGAAG---------AGCTTCGAGTTTCAGC
CGAGGGAGAGGCCGGCGGCGCGCTAGGAGGACGGAGGCGGGCCAATATGCGCCAAGATTCGTGCA--AGAGTCCTGAACG
TTCGAGAGTCGAAACTCCCTAGGCTCAGACATGTCTCACCGCCATGTGGGTCCGGCTTCGGCGTCCGGGCCCACACGTCA
GCCGGCTATCCGTTCCGAGGTCGGTAAGATATGTCCCCCG-------TAATAAGGAGGAGAGGAGGGAGGAAACTACCCC
CAAATCGATTTGGTCCAGACACCACCGAGCCCCCAAC--CAGACCCAGACCAAACCCTAGGCGGCGGCGGCGGCGGC---
GGA---GATGGCGGCGGCGAGCCTGAGGAAGGGGAACGCGAGGCTGCCGCCGGAGGTGAACCGGGCGCTGTTCGTGCGGA
ACCTGCCGTTCAACATCTCGAGCGAGGAGATGTACGACATCTTCGGCAAGTACGGGGCGATCCGGCAGATCCGGCTGGGC
AACGCCAAGGACACGCGGGGGACGGCGTACGTGGTGTACGAGGACATCTACGACGCCAAGAACGCCGTCGACCACCTCTC
GGGCTTCAACGTCGCCAACCGCTACCTCATCGTGCTCTACTCGCAGCTCAACAGGATGTCCAAGAAGACGGACATCAAGA
AGAAGGAGGACGAGATCACCAGGCTCCAGGAGAAGTATGGCGTCGGATCCAAGACCCCCTCCGCCAACGACGCCTGAACC
ATGGATGCCTGCCCGTGTTTTTCTAGTTAGAAATCGTCGAGAGAAACTGTTGAATCGGAGATCGGTCCTGTAATCTGTGC
TTGCCGCGGTATGTTTGTGTTTGCGGTGGTTCCATATTGATATGATGAACATGACTC--TGATTGATAGCATCTACTTGG
GTTGTCCTGTGTTCTTGTGTAACTTGAATTTGATACTTTGATTAGTAGGTATATCTATATGCTGTGGATGTCGATGATAT
GTTAAACAGGGTTATTCACTTGAAAATTGTGATATGTGCATGATTGCTCAGATACATTAAGCAACTGGAACCTATT----
TAGAGAATCAAATATGTGCTATAGCGAGGATCTGTTCTGCTTGATGTTACAAATTACTAGTACTGATTTAGGTGGGTGTA
TTTGCACTTTGGTGTTGCTCTCGTGTTCTTGCTGTGTGCTTATAAGGCTGTGGTGTGTTTGTTATGTTGGGTGTGTATAT
TTAATTATTGTGTATCAATATATGATTATTGCTTGTTTGAACATCTGGGGCTCCCTCAGTGAAAGATATGACTCCAGGGA
TGAGTTACTTTTGTTTATCTTATTACCATGTACCAATA---------TATGTTTCATTGGCTGTGACTAGATGCC-AGTG
TAGTTTGTTAGTGCTCATGCTATGTGATCTTACCCTGTTATGGTTTGCTAGTGCTGATTGTGCTATGCAA----------
---------TAGTGTTTTTCACGGGTTTCTTAAGCGATGATGGCTTGTCTAGTTCAAGCCTGCTTTCCTCTAGTTTACTT
GGATCTGTCATGTTCATTGTGGGATGGCTGTTTCTTAAATTTGCAGAGAATGATCTTGAGGGGACTCACAATCCTGAAAT
CTTGGATTTTGGTAGCAAATTAGTATATATCTTACTGTTGTAAATTTGTAACAGTTATGTGCATTGTGGGGATCAGTCTG
TTCTGGATTGATAGTGTGGGTCTAGAAGTTGACGAACTGTCTTGAATTACGTGCATCGTGGGATCACTGTCT
>chr5B_1
GCTAAAATTGCTCATCAATCATAACAAACAGC-GGAAGTAAAGTGCAAGTCAAACTAGAAATTCT----TCTTTCCAT--
----------GACTTTGCACACCAACTAATCTCTCCCAGATAATAATTTAACAATATTACCCATGATATGCACTCCTACT
AACACAAGCTTAAGCAACACTCACACAAGGAAGCTAAATGTTTAAGCGGGAAAGGAATTCAGGGTTGCAGAATTAGCCTC
AGAAATAAGCAT---ATCGGCAGTTACGATAACCAATTTCCGGGCATGCATCCAATCCTCACCTGTACTCGCCGGTGCAG
AACTGCCTGCGACCAAAAGAACAAACA---CAGAGATCCGTC---AGCAGAAGCGATTAATTAAACGGAG-CTAGGGTTT
AAGGTTGGGGCGGCCAGGGCGCAGTTACTACCTGAAGTTCTCGGCGGTCTTGGGGACGATGTCGGCGAAGAGCTCCATCT
TGATGCGGCCGGCCGGGATGGACCCGATGGTCACGTCGAAGAACACCACCGGGTTCTTCGGGTTCGGCGGCCGCTGGTGC
CACTCCACCGACGCCGCCGCCGCGGCCGGCGGCGTGGGCCCCGCGGATATGGCCGACGCCATGCCGCTCGGCGCTCGAGG
TACGCTCGC---GGAAGCTTCTGGAAGGTTCGGGAGCCGAGCCTGGGGGGGGGGGTGCGGAAGAAGCTTCGAGTTCGAGC
CGAGGGAGAGGCCGGCGGCGCGCAAGGAGGACGGAGGCGGGCCAATATGCGCCAAGATTCGTGCCAGAGAGTCCTGAACG
TTCGAGAGTCGAGAC-CCCGCGGCTGAGATCCGTCTCACCGCCATGTGGGTCCAGAGCCGGTCTCCGGGGCCACACGTCA
GCCGGGTATCCGTTCCGAAGTCGGTAAGATATCTCCACCG-------TAATAAGGAGGAGAGGAGGGAGGCAACCACCCC
CAAATCGATTTGGTCCAGACACCACCGAGCCCCCAACCACAGACCGAAACCAAACCCTAGGCGGCGGCGGCGGAGGCGGA
GGA---GATGGCGGCGGCGAGCCTGAGGAAGGGGAACGCGAGGCTGCCGCCGGAGGTGAACAGGGCGCTGTTCGTGCGGA
ACCTGCCGTTCAACATCTCGAGCGAGGAGATGTACGACATCTTCGGCAAGTACGGGGCGATCCGGCAGATCCGGCTGGGC
AACGCCAAGGACACGCGGGGGACGGCGTACGTGGTGTACGAGGACATCTACGACGCCAAGAACGCCGTCGACCACCTCTC
GGGCTTCAACGTCGCCAACCGCTACCTCATCGTGCTCTACTCGCAGCTCAACAGGATGTCCAAGAAGACGGACATCAAGA
AGAAGGAGGACGAGATCACCAGGCTCCAGGAGAAGTACGGCGTCGGATCCAAGACCCCCTCCGCCAACGACGCCTGATCC
TGCGCGTGTTTG-----TTTATTTAGTTAGAAATCGTCGAGGGAAACTGTTGAGTCGGATATCGGTCCTGTAATCTGTGC
TTGCCGCGGTATGTTTGTGTTTGCGGTGGTTCCATATCGATATGATGAACATGACTCGTTGATTCATAGCATCTGCTTGG
GTTGTCCTGTGCTTTGATGTAACTTGAATTTGATACTTTGATTAGTAGGTATATT--TATGCTGTGGATGTCAATGATCT
GTTAAACGGGGGTGTTCGCTTGAAATTTGTGATATGTGCATGATTGTTCAGATACATGGAGCGGCCGAAATCTATTTAGG
TAGAGAACCAAATGTGTGATATGGTGAGGATTCGTG-----------TACAAATTACCAGTACTGATTTAGGTGGGTGTA
TTTGCACTTTGATGTTGCTCTGATGTTCTTGCTGTGAGCTTATAAGGCTGTGGTGTGTTTGCTGTTATCTTGGA------
--------TGTGTATGAATATATGATTATTGCTTGTTTGAACATCTGTGGCTCCCTCAGCAAAAGATATGACTCCAGGTA
TGG-TCACTTTTGTTTATCTTATTACCATGTACTACCAATATACTCCTATGTTTCATTGGCTGTGACTAGATGCC-AGTG
TAGTTTGTTAGTACTCATGCTATGTGATTTTA-CCTTTTATGGTTTGCTAATGCTGATTGTGCGATGCAAACTTGCTGCT
GTGTAGTATTAGTGTTTTCAT-GGGTTTCTTAAGCGATGATGGCTTGTCTAGTTCAAGCCTG------------------
-------TCATGTTCATTGTGGGATGGCTGTTTTTTGAATTTGCAGAG--TGATATTGAGGGGACTCAAAATCCTGAAAT
CTTGGATTTTGGTAGCAAATTAGC--GTATCTTTCTGCTGTAAATTTGTAACAGCTATGTGCATTTTGGGGATCAGTATG
TTCTGGATTTGTAGTGTGGGTCTAGGAGTTGATGAACTGTCTTGAATTACGTGCAT----------------
>chr5D_1
GCTAAAAGTGCTCATGAATCATAAATAACAGC-GGAAGTAAAGTGCATGTCAAACTAGAAATTCTCCCTTCTTTCCAC--
----------GACTTTGCACACCAACTAACATCCCAGC-----TAATTCAACAAAGTTACCCATGATATA------TACT
AACACAAGCTTAAGCAACAACCACACAAGGAAGCTAAATGTTTAAGTGGGAAAGGAATTCAGGGTTGCAGAATTAGCCAC
GGAAATAAGCATACTATCGGCAATTACGATAACCAATCGCCGGGCATACATCCAGTCCTCACCTGTACTCGCCAGTGCAG
AACTGCCTGCGACCAAAAGAACAAACAGAGCAGAGATCCGTCAGCAGCAGCAGCGATTAATTAAACGGAACCTAGGGTTT
AAGTGCAGGGCAGCGAGGGCGGAG---CTACCTGAAGTTCTCGGCGGTCTTGGGGACGACGTCGGCGAAGAGCTCCATCT
TGATGCGGCCGGCCGGGATGGACCCGATGGTCACGTCGAAGAACACCACCGGGTTCTTCGGGTTCGGCGGCCGCTGGTGC
CACTCCACCGACGACGGCGCCGCGGCCGGCGGCGTGGGCCCCGCAGATATGGCGGACGCCATGCCTCTCGG---------
--CGCTCGC---GGAAGCTTCCGGAAGGTTCGGGAGCCGAGCGGGGGAGA------GCGGAAGAAGCTTCGAGTTTCAGC
CGAGGGAGAGGCCGGCGGCGCGCAAGGAGGACGGAGGCGGGCCAATATGCGCCAAGATTCGTGCAG--GAGTCCCGAACG
TTCGAGA-------C-CCCTCGGCTCAGATCCCGCTCACTGCCGTGTGGGTCCAACGTCGACCTCCGGGCCCACAGGTCA
GCCGGCTATCCGTTCCCAAGTGAAGTCGGTAATCATCATCGTCCTAATAAAAAGGAGGGGAAGAGA-AGGAAACTACCCC
CAAATCGATTTGGACCAGACACCACCGAGCCCCCAAC--CAGACCCAGACCAAACCCTAGGCGGCGGCGGCGGCGGCGGC
GGAAGCGATGGCGGCGGCGAGCCTGAGGAAGGGGAACGCGAGGCTGCCGCCGGAGGTGAACAGGGCGCTGTTCGTGCGGA
ACCTGCCGTTCAACATCTCGAGCGAGGAGATGTACGACATCTTCGGCAAGTACGGGGCGATCCGGCAGATCCGACTGGGC
AACGCCAAGGACACGCGGGGGACGGCGTACGTGGTGTACGAGGACATCTACGACGCCAAGAACGCCGTCGACCACCTCTC
GGGCTTCAACGTCGCCAACCGCTACCTCATCGTGCTCTACTCGCAGCTCAACAGGATGTCCAAGAAGACGGACATCAAGA
AGAAGGAGGACGAGATCACCAGGCTCCAGGAGAAGTACGGCGTCGGATCCAAGACCCCCTCCGCCAACGACGCCTGATCC
TTGGTGCCCCGT--GTTTTTTTTTAGTTAGAAATCGTCGAGAGAAACTGTTGAATCGGAGATCGGTCCTGTAATCTGTGC
TTGCCGCGGTATGTTTGTGTTTGCGGTGGTTCCATATTGAT--GATGAACATAGCTCG----------------------
---------------GATGGAACTTGAATTTGATACTTTAATTAGTAGGTATATCTG--TGCTGTGGGTGTCAATGGTCT
GATAAACAGGGGCGTTCGCTTGAGATTTTTGATATGTGCATGATTGTTCAGATACATTAAGCAGCTGGAAT---------
------------------ATATTGAGAGGATTCGTGCTGCTTGATGTTCCAAATTAC---TACTGATTTAGGTGGGTGTA
TTTGCATTTTGATGTTGCTCTGATGTTCTTGCTGTGTGCTTATCAGGCTGTTGTGTGTTTGCTGTTATGTTGGA------
--------TGTGTATGAATGTATGATTATTGCTTGTTTGGCCGT------------------AAAAGATGACTCCAGAGA
TGGGTCACTTTTGTATATGTTATTAACATGTACCAATT---------TATGTTTCTTTGGCTGTGATTAGAGCTAGAGTG
TAGTTTGTTAGTGCTCATGCTATGTGATTTTA-CCTGTTATGGTTTGCTAGTGCTGATTGTGCTATTTCAACTTGCTGCT
ATGTAGTATTCGTGTTTTCAT-GGGTTTCTTGAGCGATGATGGCTTGTCTAGTTCAAGCCTGCTTTCCTCTAGTTTACTT
GGATCTGTCATGTTCATTGTGGGATGGCTGTTTCTTAATTTTGCAGAGTATGATTTTGAGGGGACTCACAATCATGAAAT
CTTGGATCTGGGTAGCAAATTAGC--ATATCTTACTGTTGTAAATTTGTAACAGCTATGTGCATTGTGGGGATCAGTATG
TTTTGGATTTGTAGTGTGGGTCTAGGAGCCGATGAACTGTCATAAATTAAGTGCATCATGGGATC-------
>chr6B_1800
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------TGTTGCTCTCGTGTTCTTGCTGTGAGCTTATAAGGCTGTGGTGTGTTTGCTGTTATCTTGGA------
--------TGTGTATGAATACATGATTATTGCTTGTTTGAACATCTGGGGCTCCCTCAGCAAAAGATATGACTCCAGGTA
TGGGTCACTTTTGTTTATCTTAATACCACGTACTACCAATATACTCCTATGTTTCATTGGCTGTGACTAGATGCC-AGTG
TAGTTTGTTAGTACTCATGCTATGTGATTTTA-CCTGTTATGGTTTGCTAATGTTGATTGTGCTATGCAAACTTGCTGCT
CTGTTGTATTAGTGTTTTCAT-GGGTTCCTTAAGCGATGATGGCTTGTCTAGTTCAAGCCTG------------------
-------TCATGTTCATTGTGGGATGGCTGTTTTTTGAATTTGCAGAG--TGATATTGAGGGGACTCAAAATCCTGAAAT
CTTGGATTTTGGTAGCAAATTAGC--GTATCTTACTGTTGTAAATTTGTAACAGCTGTGTGCATTTTGGGGATCAGTATG
TTCTGGATTTGTAGTGTGGGTCTAGGAGTTGATGAACTGTCTTGAATTACGTGCAT----------------
>SNPs
-----------S-------------------SS-------S------------S-S--------S------S--SSS-SS
SSSSSSSSSS-------SS------------S-----S------------------------------------------
-----------SS------------------S-------------------S---------------------S------
-----------------------S---S------------------------S---------------------------
--------------------------------------------S------------S----------------------
-------------------S------------------------------------------------------------
-------S--------------------------------------------------S---------------------
-----------------------------------------------S------------------------S----S--
S-SSSS---SSS----------------------S-S----------S-S--SS--------------------------
-----------------------S--------------------------------------------------------
------------S--S----S--------SSS---------------------S--S-----S-----------------
------------------S-------------S-----------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------S------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------S---------------------------------------S--
S---SSS----SSS--S-----S---------------------------------------------------------
----------------------------------------------------------------S---------S-----
-----------S-S-SS---------------------------------------S---------------S-----S-
-----------S-S---S-------S--------------------S----------------S------S---------
-------S-----S----S---S-S------SS--S---------------------S----------------------
-----------S-------------------------------------------------S-S-SS--SSS-SSSSSSS
SSSSSSSS-------S-------------------------------------------SS-------------------
--S--S--------------------------------------------------------------------------
----------------------------S---S-----------------------------------------------
------------------SSSS----------------------------------------------------------
------------------------------------------------S-----S-------------------------
-----------------------SSS----------------------------S----------------------S--
---------SS--------------S------S------------------------S-------SSSSSSS
>forward_118
--------------------------------------------------------------------------------
------------------GCACCAACTAATCCCCCAGT------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>reverse_1446
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----TGCCTGCCCGTGTTTTTCTA-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
