>input_sequence_81774
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--------------------------------------------------ATGGCCGCCGCCGCCCCGGCCCGCAGGCTC
CTCCTGCGCCTGCGTCTCCCACTCCCCCTCTGCAACCCAGCGCCGTCCCCCGTCCCGCTCCTCTCCCAC---CTGACGCC
GCACCTCCACCCACCACCGCCACCGCAGCCAACGCTCCCGGGCGCCCCGGCCCCGGACCCGAAGCTCCGGGACCTCCTCT
TCGCCTTCCACCCCGCCGTGCACGTATACCCGTCCCTCGTCGACGTCCCGAGAGGAGGGCTGGGCGACCTTGACGCGCGC
GAGGACGGAGGGGGGGCCAAGGAGGCGGAGGTGTGGGCGGACAGCGTCAAGAAGAAGCGGAAGCGCAAGATGAACAAGCA
CAAGCTCCGCAAGCTCCGGAAGCGCCTCCGCCGCCAGACCTGA-------------------------------------
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>chr5A_1_TraesCS5A01G368000
AGCGGGACACAATCCCTAACAAGACTTAAAGAAGCACCTGAAAATGGAACCCTCCCGCCGGCAAGGGCCGAAATCCACCA
TGCACCCATGGCCCTAAGGCCACAGGAGATGTGTCAGATCAGCGGCGCTGCCGAGAAACCCTAGACGTGCAGCGTTAATT
AACTCTTTAGACTCTTTCTGCTGGAAATTGATGGTTGTCTTGTTCCTTGGTTACCCCGTCAGCGTTGCCATGGACGGTGG
GTCACGGTGGAACAAAGACGATGGGTCACGGTGCAAAGAAGGAAAGGGTTCGAGGGTGAGGGTGAGTCGTTTTGCCGATT
TAGAGACATGACTTCGCTTCGCATATCCCACGAGTATGCCATTTTCAGATAACGAGTTGGTCCTTGTTCCTTAGGTTAGG
TGGACCAAACGCAAGAACGAACTTTTGATTCGAAATGAACCCATTATGTTTAACATGATTACCCAAGCCAGAACACGCTA
GCTTGTCTGGCCCGCGAACCGAGCATAACTTAAATCGTTTAGTTTTTTCTTTGGTGAAATCAGCCCACTGTGGTTCAAGT
TCTAGACATTGCCGCTGGAATTCGTTTTAGTTTATTTTAGCATTTTCCGGCGAGGTTGGTTCAATAGCAAGAGACATCTC
GGTCGACTATGAGACGTATGTGGTGACTGGGTCAATATCAAGAGGCTGTTCCGGTTTAGTATCTTGGCAGTGCTCGTAAC
GATAAAATGTGCGTGTATGTTCATAGGAATGGTTGTACGTGCGTGCATGTATTGTATTGTATTGTATTGTGTTATTTTAT
TTTTGTTTAAAAAAACCTGGGCTGGCCCGTTGAGTTGACGGCCGAAAGACTGAGCTCGGGTTCGGTCCCAG---------
-TGGGAAGCTCGGCTTAGCCGGACCGGCTCCGGCCCAAAGCGACCGACCATTCCAAACCCTCGCATCCAAGCCGCCTCCG
CCTCCGCCTCCGCCTCCGCCTCCACCTCCCCGCGGATCTCCCATCCATCCATGGCCGCCGCCGCCCCGGCCCGCAGGCTC
CTCCTGCGCCTGCGTCTCCCACTCCCCCTCTGCAACCCAGCGCCGTCCCCCGTCCCGCTCCTCTCCCAC---CTGACGCC
GCACCTCCACCCACCACCGCCACCGCAGCCAACGCTCCCGGGCGCCCCGGCCCCGGACCCGAAGCTCCGGGACCTCCTCT
TCGCCTTCCACCCCGCCGTGCACGTATACCCGTCCCTCGTCGACGTCCCGAGAGGAGGGCTGGGCGACCTTGACGCGCGC
GAGGACGGAGGGGGGGCCAAGGAGGCGGAGGTGTGGGCGGACAGCGTCAAGAAGAAGCGGAAGCGCAAGATGAACAAGCA
CAAGCTCCGCAAGCTCCGGAAGCGCCTCCGCCGCCAGACCTGAGCTCA---------TGGATCCCGGTGAACACCCGACG
CCCCGCGCAC-------TTAGTTTCAGCATTTTGAATTTTAGTTGATTTCATATCCTCCATACATAAAGTGGGGGAGGGG
GAATGACGTGAAGTGAAAAATGCTCCGTGTAATGCCTGATCCATA--ATCACTGTTTGTAGCACATTTCACATGTTTAGG
CGATCTTGACACGGCCCCGCTTCGGCGAGGTAAGAGATTGTTGCGCATCCAGAGTACTGTT-ATTAATAGATGGCGATGC
TGTACCCATCCCTATATTGAGGTC-TTAGTCTAGATGCCTGCATTTTTCATAT----TTGACAACTGCTCTGTTACTGTT
AGTATGTGTGACCTTGTTTTCAATACTGTTACGTGGCGCTATAGGAGATATGTAGATAGATAGATGCTGCCATTGATAGT
TGCATGCTGAAACCAGATTAAACATCTGCCTCTCTAGTCCAAAGATGCAGTTCTACACATGGATCCTTGCGGCTGTGTGA
ATTAGTCTTTGCACCTCAGGGAACAGCAACACATGTAGAAGTTGC--TATCTTACAGTAAACGGTAACACAAAGTGGCGC
ACACATGCACACATGCACACACGCACGCACGGACAAACTATTCACACTTTCTTCATGTATACCTTGTCCAGTTGCCCACT
TTGATCAGTACTATTACCCACTGAACCATGGAAAACAAATGGAGTCATGCTCTGCCCTATTGGTGGGCTAGAGTTTCCAT
ATCTATAATCAGTGGTGTCAGCCATGATTTTAACAGCACAATGTTTGTACCAGTGGGGTTTCTGATCTCATGCCAATCAC
TTGGATCAAAGTCATGCCATTTTGACAGTACAAAGTTGCTTGTACCCATGGGTTACTTGCGTATCGAACTTCTGATATGT
CAACCATAAACCTTATTTCTAGATATACATAGGCACAGAAATATTTAGTGTCCATTGTAGAATCATGCGTTCCCAGTAGG
CCCTAAGGGATTTAGTTGCCTGCATACCA
>chr5B_802
TTTGTTAAAAAAATA-----------------------------------------------------------------
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----------------CTGGTCTGGCCCGTGGAGTTGACGGCCGAAGGACTGAGCTCGGGTTCGGTCCCAGTGTGGTGGG
GTGGGAAGCTCGGCTTAGCCGCACCGGCTCCGGCCCAAACCGACCGACCACTCCAAACCCTCGAATCCAAGCCGCCTCCG
CCTCCGCCTCC------------------CCGCGGATCTCCCATCCATCCATGGCCGCCGCCGCCCCGGCCCGCAGGCTG
CTCCTGCGCCTGCGCCTCCCCCTCCCCCTCTGCGACCCGCCGCCGGCCCCCGTCCCGCTCCTCCCCCACCTGCTGACGCC
GCACCTCCACCC------------GCAGCCACCGCCGCCGGCGCCTCCGCTCCCGGACCCGAAGCTCCGGGACCTCCTCT
TCGCCTTCCACCCCGCCGTGCACCTATACCCGTCCCTCGTCGACGTCCCGAGAGGAGGGCCAGGCGACTGCGACGCGCGC
GAGGACGTAGGGGAGGCCAAGGAGCCGGAGGTGTGGGCGGACAGCGTCAAGAAGAAGCGCAAGCGCAAGATGAACAAGCA
CAAGCTCCGCAAGCTCCGGAAGCGCCTCCGCCGCCAGACCTGAGCCGCCGCCGCACGTGGATCCCGGTGAACACCCGACG
CCCCGCGCAC-------T-AGTTTCAGCATTTTGAATTTTACTTGATTTCATGA--TCCATACATGAAGTGGGAGAGGGG
GAATGATGTGAAGTGAAAAATGCTCCGTGTAATGCCTGATCCATATGATCACTGTTTGTAGCACATTTTACATGTTTAGA
TGATCTTGGCACGGCTCCGCTTCCGCGAGATAACAGATTGTTGCACATCCAGTGTACTCCT-ATTAATCGATG-AGATGC
TGTGCACAGCCCCAAA-----------AGTCTAGATGGCTGCATTTTTCATAC----TTGATGACTGCT------CTGTT
AGAATGTGTGACCTTGTTTTCAATATTGTTATGTGGCGCTATAGGAGATATGCAGATAGATAGATGCTGTCATTGATAGT
TCCAGGCTGAAACCAGATCAAATGTCTTCCTCCCTAGTCAAAAGATGCACTAATACACATGGACCTTTGGGGCTATGCGA
AATAGTCTTTGCACCTCACGGAACAGCAACACGTGTAGAAGTCGCTGTATCTTACAGTAAACAGTAACACAACGTGGCAC
ACACGCACG------------CGCACGCACGGACAAACTATTCACACTTTCTTCATGTATACTTTGTCCAATTGCCTACT
TTGATCAATACTATTACCCACGGAACCATGGAAAACAAATGGAGTCATGTTCTGCCCTATCGGTGGGCTAGAGTTTCCAT
ATCTATAACCAGTGGTGTCAGCCATGATTTTAACAGCAAAATGTTTGTACCAGTGGGGTTTCTGGTCTCATCCCAATCAA
TTGGATCAAAGTCATGTCATTTCGACAGTACAAAGTTGCTTGTACCCATGGGTTACTTGCGTATCAAACTACTGATGTGT
CAACCATAAACCTTATTTCTAGATATACA--GGCACAGAAATATGTAGTGTCCGTTGTAGAATCATGCGTTCACAGTAGG
CCCTGAGGGATTTAGTTGCCTGCATTCCA
>chr5D_809
------AAAAGAAAA-----------------------------------------------------------------
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----------------CTGATCTGGCCCGTTGAGTTGACGGCCGAAGGACTGAGCTCGGGTTCGGTCCCAGTGTGG---G
GTGGGAAGCTCGGCTTAGCCGCACCGGCTCCGGCCCAAACCGACCGGTCATTCCAAACCCTCGCATCCAAGCCGCCTCC-
-----------------------ACCCCTCCGCGGATCTC----CCATCCATGGCCGCCGCCGCCCCGGCCCGCAGGCTG
CTCCTGCGCCTGCGCCTCCCACTCCCCCTCTGCAACCCGCCGCCGGCCCCCGTCCCGCTCCTCCCCCACCTGCTGACGCC
GCACCTCCACCC------------GCAGCCACCGCCGCCGGCGCCTCCGCTCCCGGACCCGAAGCTCCGTGACCTCCTCT
TCGCCTTCCACCCTGCAGTGCACACATACCCGTCCCTCGTCGACGTCCCGAGAGGAGGACCGGGCGGCCGCGACGCGCGG
GAGGACGGAGGGGAGGCCAAGGAGCCGGAGGTGTGGGCGGACAGCGTCAAGAAGAAGCGCAAGCGCAAGATGAACAAGCA
CAAGCTCCGCAAGCTCCGGAAGCGCCTCCGCCGCCAGACCTGAGCTCA---------TGGATCCCGGTGAACACCGACGC
CGCGCCCCTTGGCTTGTT-AGCTTCTGCATTTTGAATTTCATTATTCGATTCGATG---ATCCAAAAAGTGGGAGAGGGG
GAGTGATGTGAAGTGA---------------------GATCCATATGATCTCTGTTTGTGGCACACTTCACATGTTTAGA
TGATCTTGACACGGCTCCGCTTCTGCGAGATAACAGATTGATGCGTATCCGGTGTACTCTTTATTAATAGATGGAGATGC
TGTGCCATTCCCTGTATTGAGGTCTTTAGTCTAGATGGCTGCATTTTTCATACATACTTGATGACTGCTCTGGTAGTAT-
-GTGTGTGTGACCTTGTTTTTAATATTGTTATGTGGTGCTAGAGGAGATATGCAGATACATAGATGCTGTCATTGATAGT
TCCAGGCTGAAACCAGATCAAATGTCTTCCTCCCTAGTCAAAAGATGCACTTCTACTCATGGACCTTTCCGGCTATGCGA
AATAGTCTTTGCGCCCCAGGGAAGTGCAACACGTGTAGAAGTCGCTGTATGTTACAGTAAATAGCAACACAAAGTGG---
-------------TGCACACACGCACGCACGGACAAACTATTCACACTTTCTTCATGTATACCTTGTCCAATTGCCCACT
TTGATCAATACTATTACCCACTGAACCATGGAAAACAAATGGAGTCATACTCTGCCCTATCGGTGGGCTAGAGTTTCCAT
ATCTATAGCCAGCGGTGTCAGCCAGGATTTTAACAGCACAATGTTTGCACCAGTGGGGTTTCTGATCTCATGCCAATCAC
TTGGATCAAGGTCATGCCATTTTGACAGTACAAAATTGCTTGTACCCATGGGTTACTTGCGTATCAAACTTCTGATATGT
CAACCATAAACCTTATTTGTAGATATACATAGGCACCGAAATATTTAGTGTCCATTGTAGAATCATGCGTTCCCAGTAGG
CCCCAAGGGATTTAGTTGCCTGCATACCA
>SNPs
SSS-SS-S-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS----S-------------------------S---------------------------------
---------------------S-----------------S----------------------------------------
-----------SSSSSSSSSSSS---S-S--------------------------------------------------S
--------------S-----------------------SS-----S-----------------S----------------
------------SSSSSSSSSSSS-------S---SS----SSS-S---SS-----------------------------
-----------------------S------------------------------------S--------SS---------
-------------S----------S----------------------------------S--------------------
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------------------S----------------------S----------SSSS-----------------S------
------S------------------------------------------------------------------------S
S--------------S-------S-----S---S------------------S-----S---------------S-----
---S---------------------------------S--------------S--------SS---------S-------
-------------------------S-----S--------------------S----------------S----------
-S--S-------------S---SS---S----S------S---------S-------------S-S--------S--S--
-S------------------------------S---------S-------------------S---------------S-
----SSS-SSSSS---------------------------------------------------------S---------
-------S----------------------------------------------------S-------------------
--------S-----------------------------------------------------------------------
-----------------------------------------------------------------S--------------
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>forward_418
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------------------------------------------------------------------------------GG
TGGACCAAACGCAAGAAC--------------------------------------------------------------
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>reverse_1514
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-------------------------------------------------------------------------GGAGGGG
GAATGACGTGAAG-------------------------------------------------------------------
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