>input_sequence_81770
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--------------------------------------------------------------------ATGGGCATGGAG
ACGGGCGACGGGCTCGATCTGAGCTTGTCTCTGCGCCAGTACTCGCCACCGAAGTTCCAGCGGGTGTTCTCCTGTTGCTA
TTGCCCCCGCAAGTTCAGGACCTGGCAGGCGCTCGGCGGCCACCAGAACGGGCACAAGCTGCAGCGCGACCTGGCCAGGG
AGGCCA---------------CGGCGGTGGAAGAGCTTGGTAAGGCCGCCGTCGATGACCACAGCGCTCCGCCGCGCTA-
--------------CGGCGCCCACGCGTGGGGAGCAGGAGGGAGGATCCACCCTCGTCGACATCGCCAGCAGGGCACGGG
TACTGGTTCGGGAGCAGCCTCCTCCGGGACAAGAAGAGGCAACCAAGA---GCTCGCGGAAGAGGCTATTGACCTGTCCC
TGAAGCTATGA---------------------------------------------------------------------
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>chr4D_1_TraesCS4D01G340000
TATGTTGATTTGAGATAAACTCTACGCAAAAAAGATGCACATCAATGTTATGATTTCATTTAGGTGATTGGCTCGTAGTT
TCGTCGGCCGTAAATGTTCAACTTCGTGTTGATGTTTGGAGCTTTTTTGAACGAATTTTGTCAAATTCATCACGCACGGT
CGATCGTTTGATATTTTTTTTACCAATACCTTCGTCTCGCAGTTTTCACACGACTTTTATGTTGCATATTTTCTATTTGG
ACGATTGTAGACAAGTAGATCTACCTCTTTCTCGTGGACTGTATATATGCTTATGTGTACTATGTTTAGTGATAGTCCTT
AATCTTCATCATCCCTTTGTTCCTTTCGCCTTCTTTCGTGCATCATGCTACACTGACGCCATTGCTAGCGCCGTTCTTCT
CGGTCTCCTCTCTCGCGTCCTGCTACACTGGCACCACCGCTGGCGTTGTTCCTCTCGGCCTCCTCATCCGCGTCGTGCTA
CACTGACGCAGCCATGGCGCGTGCACTGCATTTCTGCTCCCCCATCCTCTGCCTCAGCACTCTCCTATTAGTCCCTCCGC
ACAGACTTCCGCAATGGCGATGACACTAGCAATTGGTTCACCGCGCTGCCAACGGAATCGCTCGCTCGCGACTCCATGTT
GGTCGTGTCGGCCGCGGCGCCTCGGCCATCGTCCACTGCAGACACGGAGGCACTCTAGTGTAACTCCGTGTTTTATGTCT
TATGTGTAGCTGGTAACTGTTAATCATATCCAGTGTAT------------------------------------------
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--------------------------GCAAACAAGCACCACCGTGTAGTTGCATCAG-----------------------
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----------------CCAGCCAATGCACCCAACCAAATGCCAGTCAAAATTGCTCTCC-AACGTGGATATGCATTTATA
GTTAAGAAGTGATTTTTTTACTTCTAAATGTATTTTTTTTTCCAAAACGCTCTCCCTGAAGCGCATCATATAAAACACCG
CATGCGTGATTGATTGCCTTGCCACACTGTGTACGTACTCCATATCCACTCCCAGGCTGATTTGTGACATGGGCATGGAG
ACGGGCGACGGGCTCGATCTGAGCTTGTCTCTGCGCCAGTACTCGCCACCGAAGTTCCAGCGGGTGTTCTCCTGTTGCTA
TTGCCCCCGCAAGTTCAGGACCTGGCAGGCGCTCGGCGGCCACCAGAACGGGCACAAGCTGCAGCGCGACCTGGCCAGGG
AGGCCA---------------CGGCGGTGGAAGAGCTTGGTAAGGCCGCCGTCGATGACCACAGCGCTCCGCCGCGCTA-
--------------CGGCGCCCACGCGTGGGGAGCAGGAGGGAGGATCCACCCTCGTCGACATCGCCAGCAGGGCACGGG
TACTGGTTCGGGAGCAGCCTCCTCCGGGACAAGAAGAGGCAACCAAGA---GCTCGCGGAAGAGGCTATTGACCTGTCCC
TGAAGCTATGATCGATCCATCCATGCAGTACCTAGTTC--------------------CTCTGTTCCATTAGTTTCATTT
CTTGTCTTGTGTTTCTGCTATCACTTAA-TTACCAGCTAGGTTAAATACTTATGCTGGCTGGCTCTTGATTTGGGCTT--
-----GACACTGTACTTGCTCGATCTTCAGATATCTCCAATTCTCCATGCATGCATGGATTGTTACTTTGTTAGTTAA--
-GTCGCTACACTCATCTGAATCTTTGTCTGTAAATGCTTGCAGTAATCTACTTCTGGTCCGTCGCCTGTGAATAACTAAA
TTTTCGGTCCTGGCCGATAATTTCTTGTTGTTTGTCTCCCT---------------------------------------
--------------------CATGAGCATAGCGCATCAATCGGCGGCCAGCTTCGACCGGGCAACACTAGCTTGGGTCCC
ATGCTAACCATGGCCGACTTGTAGGTAGCTTACCAAGCTGGCCGCTTGCTTACCATGGCCGACCTGGATGCACCAGTCAA
GCTGATGCGGTGATGCCAGCCGGCGGGGTATACAATGCATGTCTTCATAAGCCAAATTTGGCGTAGCACCTCTGTGCGCA
CCCGAGCTGGTGGCCGGGCAAAAGCCGCGTCTGTAGCAAAATCGGC----CGAGCTGCTTATCTGCTGCGGCCTCAGC--
-----ACCATCCAGGATGGCAAGGATGTCACCGCTGCGGCGCTGGACACCTTCACCGAGCGTTTCAAGGAGCAGCTGCTG
GCCACGGCTGTCGAAAATGAGCTCGTCGACCACGGAGGTGAACATGCTTTGGATCATGAGTTTGCGAATGATGGAGCTGT
GTCGCAGCCATGGTTTTGGTTACCGGGCGGTAAATTCTGGCGCCAGGTAACCGCATTTCCCGCTCCCCCACGATAATTAT
GTATACCGAGCAGAAAATTTGGAGCTTTTTGAATTTTTTGAATTTAAACTGCTAACGTATAGTTAAATAAGGTATATCTC
TAAATGAAACACATGCTTACTTGCGTCATAGTGGTAAGGATCTTCAACCAGCAACGGCAAGCCATGTGTTCC
>chr4B_462
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-------------------------------------------------------------CCTCATCTGCATCCTACTA
CACTCACGCAGCCATGGCACGTGCACTACATTTCTCCTCCTCCGTCCTCTGCCTTAGTGCCCTTCTATTAGTCCCTCCGC
ACAGACTTCCTCTATGACCATGACGCTAGCAATTGGTTTACGGCGCCGCCAACGGAATTGCTCGCTCGCGACTCCATGCT
AGTCGTGTCGGCCGCGGCGCCTCGGCCATCGTCCACTGCAGTCATAGAGGCACTCTAGTGTAACTCTGTTTG-------T
TATGTGTAGCTGGTAACTCTTAATCATAGCCAGGGCCGGCCCTGAGATTTCGGGGGCCCGGGGCGAAACTAGAATCCGGG
GCCCTCAACATATTTGTATATATATTAATATACCAGCGCAAAGCTACAAAGCCACAACACACTAGAACAACTTAATATAA
CAATCTTACTGATTATCATGGCATACTCACAAATCAATAATTTTCTAGTATTCTCTGTCCCTAAATAATGTACGATCATT
TGATTATCACTTGTCATATTGTAACAAAAAACTAAAGTGTGTCTGAAAATTGATGACAACAAATATTGGGAAAAAGAAAA
CCTATGATTGAAGTGGTCACACAAGAAAAGTAAAGGTAAATGATGCTGAAGAAACATTATGAACATTCGGCCGTATGTTA
CCCAGGACATGGGTACAATTCAGATGATCTTATGCGAAATCTGTGTCAACCATGACAGGTTACTACTGCTAGTACAACGT
TCACTTCCGTTGGTTAATAGTAAATGGCAAACAATAGACACCGAATATAATAATACCGCTAGATATTTGAAGAGAAAAGA
GATCATTTAAAAAAATGATATTTGTAGAGAAATTGTAGTCTTACCTTCCGTCAGTCCTTATTTTGTCCTGAGGGGGGGGC
AGGGGGGGGCGGCCGCCCAGCCAATGCACGCAACCAAACGTCAGGCAAAATTGCTCTCCTAACGTGCATATGCATTTATA
GTTAAAAAGTGAATGTA----------------TTTTTTTTTCAAAACGGGCTCCCTGAAGCGCATCATATAAAACGCCG
CATGCGTGATTGATTGCCTTGCCACACCGTGTACGTACTCCATATCCACTCCCAGGCTGATTTGTGACATGGGCATGGAG
ACGGGCGACGGGCTCGATCTGAGCTTGTCTCTGCGCCAGTACTCGCCACCGAAGTTCCAGCGGGTGTTCTCCTGCTGCTA
TTGCCCCCGCAAGTTCAGGACCTCGCAGGCGCTCGGCGGCCACCAGAACGGGCACAAGCTGCAGCGCGACCTGGCCAGGG
AGGCCA---------------CGGCGGTGGGAGAGCTTGGTAAGGCCGCCGTCGATGACCACAGCGCTCCGCCGCGCTA-
--------------CGGCGCCCAGCCATTGGGAACAGGAGGGGGGATCCACCCTCGTCGACATCGCCAGCAGGGCACGGG
TACTGGTTCGGGAGCAGCCTCGTCCGGGACAAGAGGAGGCAACCAAGAGGAGCTCACGGAAGAGGCGATTGACCTGTCCT
TGAAGCTATGATCGATCTATCCATGCAGCAGCTAGTTC--------------------CTCTGTTCCATTAGTTTCATTT
CTTGTCTTGTGTTTCTGCTATCGCTACGCTTACTAGCTAGGTTAAATACTTATGCTGGCTGGCTCTTGATTTGGGCTT--
-----GATGCTGTACTTGCTCGATCTTCAGATATCTC------------CATGCATGGATTGTTACTTTGTTAGTTAATA
AGTCGCTACACTCATCGGGATCTTTGTCTGTAACTGCTTGCAGTAATCTACTTCTGGTCCGTCGCCTGTGAATAACTAAA
TTTTCGGCCCTGGCCGATAATTTCTTGGTTTTGGGGCTTGTGAATAACCATGCCTTGACGTCTGATTCAAGCTTGAAGAC
AGATTTCTTGTTGTCTCGCCCATGAGCATAGCGCATCAATCGGCGGCCAGCTTCAACCGGGCAACACTAGCTTGGGTCCC
ATGCTAACCATGGCCGACTTGTAGGTAGCTTACCAAGCTGGCCTCTTGCTTACCATGGCCGACCTGGTTGCACCGGTCAA
GCTGATGCGGTGATTCC-GCCGGCGGGGTATACAATGCATGTCTTCATAAGCCAAATTCGGCGTAGCACCTCTGCGCGCA
CCCGAGCTGGTGGCCGGGCAAAGGTCGCGCCTGTAGCAAAATCGTCCGAGCGAGCTGCTTGTCTGCCGCAGCCTCAGGAG
TCAGGACCGTCCAGGGTGGCAAGGATGTCACCGTTGCCGCGCTGGACACCTTCACCGAGCGTTTCAAGGAGCAGCTGC--
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>chr4D_1000
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-------------------------------------------------------------------CATGGACATGGAG
ACGGAAGAGGGGCTCGATCTGAGCCTGTCGCTGCGCCAGTACTCGCCGCCGAGGTCCCGGT-----TTCGCCTGCGGCTA
CTGCCCCGCCAAGTTCAGGAGCCCGCAGGCGCTCGGCGGCCACCAGAACGTGCACAAGCTGGAGCGCCACCTGTCCAGGC
GGGCCATGGGGCTCTCGTCAGTGGCGGCGGGATTGCTTGGTAAGGCCGCCGGTGATGACCACCGCGCTCCACTGCGCCCG
GGCGCCCACGCGTGCGGAGCCCTCGCGTGGGGAGCAGGAGGGAGGATCCACCCTCGTCGACATCGCCAGCAGGGCACGGG
TACTGGTGCGGGAGCAGCCTCGTCCGGGACAAGAAGAGGCAGCGAAGA---GCTTGCGGACGAGGCGATTGACCTG-CCC
TGAAGCTTTGATCGATCCATCCATGCAGGAGCAGGATACGCAGTAGTTCGCTCCTCCTCTCTCTTCCAATAGTTTCATTT
CTTGTGT-GTGTTTCTGCTATCGCTTACATGC------AGGTTAAATAATTATGTTGGTTCACTCTTGATTTGGGCTTGA
CAGTTGACACTGTACTTGCTCGATCTTCGGATATCTC------------CAATT--------------------------
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>chr4D_1003
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----------------------------------------------------------------------GGGCATGGAG
GCGGAAGAGGGGCTCGATCTGAGCCTGTCGCTGCGCCAGTACTCGCCGCCGAGGGTTCAGCCGGTGTTCGCCTGCGGCTA
CTGCCCCGCCAAGTTCAGGAGCCCGCAGGCACTCGGCGGCCACCAGAAAACGCACAAGCTGCAGCGCGACCTGCACAGGC
GATCCATGGCGCTCTCGTCAGCGGCGGCGGGATTGCTTGGTAAGGCCGCCGTCGATGACTGCAGAGCTCCGCTGCGCCC-
--------------CGGCGCCCACGCGTGTGGAGCAGGAGGGAGGATCCACCCTCGTCGACATCGCCAGCAGGGCACGGG
TTATGGTGCGGGAGGAGCCTCGTTCGGGACAAGAAGAGGCAACGGAGA---GCTTGCGGACGAGGCGATTGACCTGTCCC
TGAAGCTTTGATCAATCCATCCATGCAGGAGTAGGACATGCAGTAGTTCGTTTCTCCTCTCTCTTCAAATAGTTTCATTT
CTTGTGTTGTCTTTCTGCTACCGCTTACATGC------AGGTTAAATACTTATGTTGGTTGGCTCTTGATTTGG------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S--S--S-S---
----S-------------S--------S-------S----S--S----------S--SS-S--S----------------
----------S-S---S-S-----S-------------S--S----S-----------S-------------------S-
S----------------------------------------S--SS--------------------S--S-SSSSSSSS-
------------------S---------S----S-SSS------------------------------------------
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----------------------------------SSSS-----SS--SSSSS--SSS-----------------------
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-----------------------------S--------S-S---S---------------------S-------------
-----S------S-S-SSSSSSSSSSSSSSSSS--------S-------SS-------------------------S---
---------------------------S----------------------------------------------------
--------------------------------------------------------------------------S-----
-----------------------S--------------------------------------------------------
------------------------------S-------------------------------------------------
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---------------------S--------------------------------------------S-------------
----------------------------S-S-------------------------------------------------
----------------------S----S-----S----------------------------------------------
-------------------------------------SSSSSSSSSSSS-------------------------------
----------------S-S--------------S----------------------------------------------
-------S-------------------S-S--S-SSSSSS----------------------------------------
------------------------------------------------------S-------------------------
-------------------------------------------S-----------------------S------S-----
--------------S--S----------------------------------------S---------------S-----
----------------------S-S----S--------------S---------------S-----S--S-------S--
--------S------S-----------------S---S----------------------------------------SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_399
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-----------------------------------------------------------CATTGCTAGCGCCGTTCTTC-
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>reverse_2665
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------------------------CCGCGTCTGTAGCAAAATCG------------------------------------
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