>input_sequence_81752
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-------------------------------------------------------------------------------A
TGGCTCACCACGGCACCACCGTGTCAGTCCTCGCGCTCCTCCTCGCCGCGGCGACGCTCTCCACCGCCGCCGCGTTACA-
-----CGGCGGCGCGCCACCCAGGGTGCTGTGGACCAAGGGCCTCCCGGCCGACCCGTTCTGCCCGTGGGAGGCCGTCAA
GTTCGGCGCGTGCGCGGCCGTGCTCGGCCTCGCGGACGCGCAGGCCGGCGCGCAGCTCGGAAGCGAGTGCTGCCAGCTCG
TGGGCGGGCTCGCCGCGGCGGAGGCGGCCTCGTGCCTCTGCATCGCCGCCAAGGAAGGCGTGCTCGGCCTTGTCTCCGCC
GAGTGGTCCGTCGGCGTCGAGCTCCTCGCCAGCGCCTGCAAGAAGGAGATCCCCGACGGCTTCAAGTGCGTGTGA-----
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>chr2B_1_TraesCS2B01G546600
GAAGATCATGCGAGCAAATGTATGTATGTATGTATACGACGGACGGCATGATCTTCAGTTACCCAGTTGCGCAGTTATTT
ACTTGGTTCGACCCCTGTGCTGGTCTGCCGGCCGGTGGCCGTGACCGCGGCGCAGTGGTCTCTGCTGACAGAACGAAGGG
CACGCCGGCGTGTGTAGCGTCGTGAACCAACCCCGGCCGAGGCAGGCTCCCAAGTTGAACATGGCACTTTGGCAGGCTAG
CTGTCTGCAAGCGGGCCGGGGGGCTGGCTGGCGCGAGCAGCTACCCTCTGCTGCTGTTGCTTTACTGTCATGGACATGGA
CTGACCTTGGTCGTAGCGCCTGCCGCTGGAGCTATCACCAGCTGCTGGCCTAGCACATGGGCGGGCATGGCA-----CGC
ATGGAGCCATTGACGAGCAGATCGTATCCCCATCGATCGGAACTCTTCTGCCCTGCT-TGCTCCACACAAAAACTACAGA
TCTGC-----------GCTGCTCATC---GGGGATCCTGACCAAAGGCAGAAGCAACAC----GCTAGCTAGCTAAGGCG
ACCCTGGCGCCATTGGCGGCATGCATGCATGCATGCGGCCCCGCCGTCTCCCTGTGCCTGCCTTGTTCCCTTCGATGAAG
CCATCCCATCGTCACATGCATGAGCTCCCAACGAACGTA-CGTACGCAGCGCATTCATGGAGAAAATGCCCATACCCCAT
ACGGCA---TTCGCTGGTTGGCTCACGTAC----CATCGCCCGGGACGC----GGCCATGCATGGATGGATGGACCACCC
GCCGGCCGGCCGGAGCTGCCCTG---------CATCCTTGCCAGTCATTCCAGGAGTCAATTACACTGTCACAACTTGAC
GTAAAAAGTCAGTTTAGTGCTAAAACTTGCGGCATACATTGGACTGGTGCTACAACTTGATTTTGACGTGGTTAGGCATG
CCAACGTCAGAGGGCTGAATTTTGACGTGGTTAGGCATGCCCTCTATTCGTAAAAAGTCAGTAAAGCCACGGCCAGA---
-----------------------------------------------------------------------GCGCAAGAA
TGGCTCACCACGGCACCACCGTGTCAGTCCTCGCGCTCCTCCTCGCCGCGGCGACGCTCTCCACCGCCGCCGCGTTACA-
-----CGGCGGCGCGCCACCCAGGGTGCTGTGGACCAAGGGCCTCCCGGCCGACCCGTTCTGCCCGTGGGAGGCCGTCAA
GTTCGGCGCGTGCGCGGCCGTGCTCGGCCTCGCGGACGCGCAGGCCGGCGCGCAGCTCGGAAGCGAGTGCTGCCAGCTCG
TGGGCGGGCTCGCCGCGGCGGAGGCGGCCTCGTGCCTCTGCATCGCCGCCAAGGAAGGCGTGCTCGGCCTTGTCTCCGCC
GAGTGGTCCGTCGGCGTCGAGCTCCTCGCCAGCGCCTGCAAGAAGGAGATCCCCGACGGCTTCAAGTGCGTGTGACATGT
TGATGTTGTTTCGTTTGGTGGAAGCGAGCGCCCATGCATTCGTGCAAGTG---CTGTCTGTCCAAGTGAAAAAAATCGCT
TTCTTCTTCGACT--------------------------------TGTAGACATTTTGTTTCAC--TTCCCGCGGTGTAT
GCAAATGCAATTGCATGTGTTGCATGGACTCTATATGAATCAACGTCAATATAATTATCTTTGCTTTGCACGAAGGAGAG
ACTGGGATTTATTCTAATTGACTTTGTTTGGGTAATAAGTTAATTACTGC------------------------------
-------------------------------------------------------TACTAGAGTAGGCTTGCTCTCATTT
GAAGGCAGTTAAGTTGGACAGTAGCATCAACGATTGTGGTTTTTTTTCTTCACATCACATCAACGTTTGTGTTGGTATGA
CCATCTTCTCTTTATCCACTGTCATCTCAAAATCGGCAGGGGTTCCTGCAATTCCACATAGAAGACAACATTGCTAATCA
GAAATAATTGGACCAAACCTAGACACAGAGGTACGAAGCACCAACCATTGTCAAAGCCACGGAAACCACAACAAGCATAT
CACCAAACACGCCTACGCACCACACAAATGCCGTCAAAAAAACCTTCATTGCATCGAGACGTCTACCTACCCGTCACCGA
GCAAGGCAGATCCCGGTGTGATGAAAGATATCGCACCACCACACAACAAGCACCACTCCTACCGAAGGGGAGAGAAACCA
AAGCGGCGAAGAGAAGGGAGTTTGGACCGCCCCATTACTGGTGGAGGTGTGATCATTCCTCACGGCCCGTAACCATGCAA
TATGATGTGTTCGCCACCGACGAGGATTCTATGGTGAAGGCCATGCGTAGGACTGCTGTTCGTAACCTCGACTTCGAAGG
TTATTCATGCTTGTACACGATTGCTTCGTATGTGGTCTATCCTGCAGAAGCCGGAGGACAGGACCTTTTTATGATGGCGT
CTACCCGGCTGGAGCATACGGCCAGGGAGGTTTTCTACCCCCATGGATGGCAGTGTGATTTACGGATAGGATCTACC
>chr2A_26
-------------------------ATGTATGTATGCGACGGACGGCATGATCTTCAGTTACCCAGCTGTGCAGTTATTT
ACTTGGTTCGACCCCGGTTCTGGTCTGCCGGCCGGTGGCCGTGAGCGCAGCGCAGTGGTCTCCGCTGGCAGAAGGAAGGG
CACTCCAGTGTGTAGCA--TCGTGAACCGACCCCGGCCGAGGCAGGCTCCCAAGTTGAAC--------TTGGCAGGCTAG
CTGTCTGCAAGGTGGACC-GGGGGTGGCTGGCGCGACCAGCTACCCTCTGCTGGCGTTGC-TTACTGTCATGGACATGGA
CTGACCTTGGTCGTAGCGCCAGCCGCTGGAGCTATCACCAGCTGCTGGCCTAGCACATGGGCG-----GGCA-----CGC
ATGGAGCCATGGACGAACAGATCGTATCCCTATCGATCCCAACTCTTCTGCCCTA-----CTCCAGAGAAAAACTACAGA
TCTACATAAATTCTAAGCTGCTGTGTGGAGGAGATCCTGACCAAAGGCTGAAGCAACACGCTAGCTAGCTAGCTAAGGCG
ACCCTGGCGCCATTGGCGGCATGCATGCATGCATGCGGCCCCGCCGTCTCCCTGTGTATGCCTTGTTCCCTTCGACGAAG
CCATCCCATCGTCACATG----AGCTCCCAACGTACGTAGCGTACGGAGCGCATTCATGGAGAAAATGCCCATACCCCAT
ACGGCA---TTCGCTGGTTGGCTCACGTAC----TATCGCCCGGGACGCACAAGGCC--------ATGGATGGACCACCA
GCCGGCCGGAGCGAGCTGCCATCGTGCCGTGTCATCCTTACCAGTCACACATCATGCAATG------TCCAACACAGCCT
GGAAGGCAGCATCGTGCAATGCCGAACACACTCATGCACACCGTAAAAGTAAACCAATCGGGAATTGCGGAATCGTGTGT
ACATCTCGCTTTACTTTTTCGCGATCACGGCACACCCTTGATCTGCTGCAGCGAACGTATACCTGGACAATACGGTGGCA
ATGATGTCAGTATAAAAATGCACGTAACACACGCGTGGCAACGGCTCCAAATTAAGCTACAGCTAGCTAGCGCGCAAGAA
TGGCCCGCCTCGGCATCACCGCGTCAGTCCTCGCACTCCTCCTCGCAGCGGCGACGTTCTCCTCAGCCGCCGGTTTACCC
ACGGCCGGCGGCGCGCCACGTAGGGTGCTGTGGAGCAAGGGCGTCCCGGCCGACCCGTTCTGCCCGTGGGAGGCCGTCAA
GTTCGGCGCGTGCGCGGCGGTGCTCGGCCTCGCGGACGCGCAGGCCGGCGCGCAGCTCGGGAGCGAGTGCTGCCAGCTCG
TGGGCGGTCTCGCCGCGACGGAGGCCGCCGCGTGCCTCTGCGTCGCCGCCAAGGAGGGCGTGCTCGGCCTCGTCTCCGCC
GAGTGGTCCGTCGGCGTCGAGCTCCTCGCCAGCGCCTGCAAGACGGAGATCCCCGACGGCTTCAAGTGCGTGTGACATGT
TGATGTTGTTTGGTCTGGTGGAAGCGAGTGCCCATGCATTTGAGC-AGTG---CTGTCTGTCAAAGTGAAAAAACT-GCT
TTCTTCTTCGACT--------------------------------TGTAGACATTTTGTTTCAC--TTCCC--GGTGTAT
GCAAACGTAATTGCATGTTT-GCGTCAACTATACATGAATCATCGTCAGTTTATTT-ATTTTGCTTTCCACGAAGGAGAG
GCCGGGGTTTA---------------------------------------------------------------------
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>chr2D_229
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--------------------------------------------------------------------TTGGCAGGCTAG
GTGTCTGGAAGGTGGACC-AGGGG--GCTGGTGTGAGCAGCTGCCCTCTGCTGCTGTTGC-TTACTGTCATGGACATGGA
CTGACCTTGGTCGTAGCGCCTGCCGCTGGAGCTATCACCAGCTGCTGGCCTAGCACATGGGCG-----GGCATGGCACGC
AAGGAGCCATGGACGAACAGATCGTATCCCTATCGATCGGAACTCTTCTGCCCTTGCCTGCTCCACACAAAAACTACAGA
TCTGC-----------GCTGCTGTGTGGAGGAGATCCTGACCA-------------------------------AAGGCG
ACCCTGGCGCCATTGGCGGCATGCATGCATGCATGCGGCCCCGCCGTCTCCCTGTGTCTGCCTTGTTCCCTTCGACGAAG
CCATCCCATCGTCACATG----AGCTCCCAACGTACGTA-CG----CAGCGCATTCATGGAGAAAATGCCCATACCCCAT
ACGGCAGCATTCGCTGGTTGGCTCACGTACGTACCATCGCCCGGGACGC----GGCC--------ATGCATGGACCACCG
GCCGGCCAGCCGGAGCTGCCATCGTGCCGTGTCATCCTTGCCAGTCACACATCATGCAATGTCCAAATCTAACACAGCCT
CGAACGCAGCATCGTGCAATTTCGAACACACGCATGCACACCGTAAAAGTAAATCAATCGGGAATTGCGGAATCGTGTGT
GCATCTCGCTTTACTTTTTC------ACGGCACACCCGCGATCTGCTGCAATAT-------------------GGTGGCA
ATGCTGCCAGTATAAAAATGCACGTAACACACGCGTGGCAACGGCTCCAAATCAAGCTACAGCTAGCTAGCGCGCAAGAA
TGGCCCGCCTCGGCACCACCCCGTCGGTCCTCGCGCTCCTCCTCGCCGCGGCGACGCTCTCCTCCGCCGCG---TTACCC
ACGGCCGGCGGCGCACCACGTAGGGTGCTGTGGACCAAGGGCGTCCCGGCCGACCCGTTCTGCCCGTGGGAGGCCGTCAA
GTTCGACGCGTGCGCGGCGGTGCTCGGCCTCGCTGACGCGCAGGCCGGCGCGCAGCTCGGGAGCGAGTGCTGCCAGCTCG
TGGGCGGGCTCGCCGCGGCGGAGGCGGCCGCGTGCCTCTGCGTCGCCGCCAAGGAGGGCGTGCTCGGCCTCGTCTCCGCC
GAGTGGTCCGTCGGCGTCGAGCTCCTCGCCAGCGCCTGCAAGACGGACATCCCCGACGGCTTCAAGTGCGTGTGACAT--
------TGTTTCGTTTGGTGTAAGCGAGCGCCCATGCATTCATGCAGCGCTGTCTGTGTGTCGAAGCGAAAAGATA-GCT
CAGTTTCATTGACTTCTACTGTAAACATTTTTTTTTAATTTTTACTGTAAACATTTTGCTTCCTAGTTCCC--AGTGTAT
GCAAATGCAATGACATGTTTTGCATGGACTATACATGAATCAATGCCAAGTTAATT-TCTTTGCTTGATACGAAGGAGAT
ACTACAATTTCTT-TACTTGACTTTGTTTGAGTAATACTCCCTCCATTCTCAAAAGGAAGACATATAACTTTTGGCTCAA
GTCAAACTGTGCAAAATTTGACCAAGTTTGTAGAAAAAACTGCCAACAACTACAATACTAGAGTAGGCTTGCTCTCATTT
GAAGACAGTAAAGCTTG---------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSS----------S------------------------------S--S----------
---------------S--S-------------------------S---S-------------S----S-----S------
---S--S-S----SSSSSS---------S-------------------------------SSSSSSSS------------
-----------SS--S-SS----S------------------------------------S-------------------
---------------------------------------------------------------SSSSS------------
----------S-----S-------------S-----------------------SSS-----------------------
----------------------SSSS-----S----------------S-------------------------------
--------------------------------------------------------S------------------S----
------------------SSSS-----------S----------------------------------------------
---------------------------------------------------------SSSSSSSS--------------S
--------------------S-S------------------------SS-SSSSS-SS-SS-S--SSSS--SS--SSSSS
-S--SSSSS--SSS-SSSSS-SSS-SSSSSS----S--SSSSSSSSSS-SS-SSSSS-SSSSSSSSSSS-SS-S-SSSSS
S--S-SSSSSSSSSS-SSSSSSSSS-SS--SSSSS-S-SSSSSSSS-S-SSS---S--SSSSSSS-S--SSS-SSSS---
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----S-S--S-----------S----------------------------------------S---------SS----S-
-------------------SS---------------------S-------------------------------------
------------------S-----------------------------------------S-------------------
-----------------------------S-----------S-------------S--------------S---------
-------------------------------------------S------------------------------------
--------------------------------------------------------------S-----------S-S---
-----------------------------------------------------------------------SS-------
------------------S-----------S--S----------------S-----S----------S------------
-------------S--S-------------S------SSSSSSSS-S-SS------------------------------
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----S----S---S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_636
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--------------------------------------------------------CCTGCCTTGTTCCCTTCGAT----
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>reverse_2130
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-------------------------------------------------GTCAAAGCCACGGAAACCAC-----------
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