>input_sequence_81744
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------------------------------------------------------------------ATGGCGTCATCACA
CAAGTTCTTCCCGGCCGTCCTCCTCCTCCTGCTGCTAGTTGTCACCATGGGTAAGCAACTAGGCACATTTTATGG-TTTA
TTATCTGCTGATATATTTGTTTCTGGTGTGTATCAATAAAATCAATGCTTATACGAATCAACACGCATGCTAACTAATGA
TTTATCTTCCAAAATAAGAATGTATAATCGACCTTTTGTGTTCAGAGGTGGCACCGGCGCAGGCAGAGGAGGGGAGGGTG
TGCGAGACGGATAGCACTCGGTTCAAGGGGATATGCATGGTTGGCACAAACTGCGCCAATATTTGCCTCACCGAGGGCTT
CACCAGCGGCAAGTGCTCCGGCTTGAAGAGGAAGTGCATTTGCACCAAA-------------------------------
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-----CCATGCTAG------------------------------------------------------------------
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>chr2B_1_TraesCS2B01G062100
GGGTACCGGGCGGAAAATTCGGATACCGCCCGGTACCTGCGTTTCTCGCTACCCCACGAGAAATCTGCGTACCGAGCAAA
AAAAATCAATTTTTTTG--AAAATTTTGAACTTGAATGGCTACTTTGAGGTCAAGTAC----------------------
------GGCAAAAACTCCGCTAAATCAACAAGTTGTCTGTGGTTTGGTGGTAAGTATGAATCTCCCTTCCTCGAACGCAG
CGGTATGTCGCTAGTTCACACAGTAGGAGAATCGAACCCACGACCTCTCACACACGTTGAAGACGGACGGGGAGAACCTG
CCACTGCACCAACAGCGAGTTTATGAACTAGTTGAGCTCCGAACTAATATATTCCGAACTCAGAAATTTTTGAATTCAAA
TTATGTTTCAAAAATTCGAGCGGTTTTTCCTCGGAATTTTGCGGTAACCGCGGTATACGCGTTTCTCGCCCACCCTCGGA
ATTTTGTTGGGATTCGGTAGCCAAATCATTGTTCCTACCTCTTATCACGCTTACACGTGCTTATGTAATTCCCTTTTGTA
AGCTGTCAAACGATGGATTGCAAAACTTGAATAATATAATCAGGTAGAGGA-----------------------------
--------------------------------ACCCCCGGTGATTTCTCAAA----------------------------
-----------------------------AAAGAAAAAAATGTTGCACCTTTTTTATTTT--------------------
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-----------GCCACCACACTCCACCAGTAGAACAAACAGCCTCATTTTCAGGTTTCAGCACTATGGATTTGTATGAAA
AAGTGGTACGTTTATGATAGAGGACATTTGGCAATTGTATGGCCCTGGTTTACTCCTAATAGTAGCAGTTAGTTACATAT
GTCTGGTGCTGAATGCATCTCCTTGCATGACGTCGGTGCTGTGTGGTTCTGCACATACAAGCCTT---GTGGTGCTCAAC
GACGCAATTCCATGCATGCTGCT----GTTGGTGTTCGTATATAACCTCAAGCTCGCACTGGGTTTCTAATCTGTCACTC
AGTTTTTCCCAGCCCTAAGGAAGTAGAGTTCACATCCCCCTTTAACCCTTCTACCACCTATCAATAATGGCGTCATCACA
CAAGTTCTTCCCGGCCGTCCTCCTCCTCCTGCTGCTAGTTGTCACCATGGGTAAGCAACTAGGCACATTTTATGG-TTTA
TTATCTGCTGATATATTTGTTTCTGGTGTGTATCAATAAAATCAATGCTTATACGAATCAACACGCATGCTAACTAATGA
TTTATCTTCCAAAATAAGAATGTATAATCGACCTTTTGTGTTCAGAGGTGGCACCGGCGCAGGCAGAGGAGGGGAGGGTG
TGCGAGACGGATAGCACTCGGTTCAAGGGGATATGCATGGTTGGCACAAACTGCGCCAATATTTGCCTCACCGAGGGCTT
CACCAGCGGCAAGTGCTCCGGCTTGAAGAGGAAGTGCATTTGCACCAAA-------------------------------
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-----CCATGCTAGCTAGA-TGATAAAACGTGGATGGCAATGACCGTACATACCCATGGACCTGTTCTCAGGATGGTCAG
AGTCACATCGATCTGCCGTGCACGCCTCTAACATACTTCAGGTTCACGGCGTCACGATGTTCTTTCTTCAGCAGTTACTA
TGAAGGATATCACTTTATTTCTT---------------------------------------------------------
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----------------------------------------------------------------------TCAA--CAAG
TTAGAAGATGTATGGTCTAAGCATGCAAGTGTTCATTGTATTCTATT---------------------------------
------------------------AGTATATGTGTATTTTTGTTACCTTTTTCTCTATGCTATTACAGTTTTTATTGCTG
ATCAATTTGATTTCTTGTGGTAATAACAATTATAAGAGAGCTCCCTTTATATTACCATATGTATAT---------GCCGT
TTGAGATTTCTTAGATCGCACTCCGACTTTACCAGTGGCGGAGCTAGCAGCAGGTTAAGCCTGTTGCTACACTATGTTGA
CTAATAAATTTATGTGATTTTCTATACTTTGCATGAAGGAATTATAAGGGAAGTTGTTGCTAGGCCTGGGGCTATAGCCA
TATATAGTTGCCCCAGGCCTGTCTCTGCCACTGGACTTTACTGTTCATTGCATTTCCTTTCCGCTCCATCTTATATCTTA
TATTTACTAATTGGAAGCACCACACGAGACACCACGTCAATCCTTGAAGTAAGAAATTTCAGCCTTCCAATTAATATATA
ATTTGTTCATAGCCATCGGATAAAACGGAGACGTCCTCCCCGATGCCACGCACGAGAGTCCTCCTTACCTTGGACTCTCC
TTTATTCAAATGAGGAAAAAAAAAGTAGCCATATCTTTTTGTTTCTTTTAAAAAAAAAGAAAGGAAAACTGATCGTGGTC
TGCTCCTAGATTAGAAGTCCTAGAAAGTTATCTTCATATAACATCCGGGTGTTATCCTGAAAAAAAAACAGCAGTCCGTG
GGTTTCCAAGGGAGATTGCATCAATCCAAGAGCCCGTACATGTTACACTAGGAATCGTGCAATGTAAGATCACCTACCAA
TTTTTTTTGT
>chr1D_1
GGGTACCGGGCGGAAAATTCGGATACCGCCCGGTATCCGCGTTTCTCGCTACCCCACGAGAAAGCTGCGTACCGAGCAAA
AAAAGTCAATTTTTTTTTAAAATTTTTGAATTTGAACGGCTATAGTGAAGTCAAGTATGGCAGAAATTACCACCAGACCA
GTGTATGGCAGAAACTCTACTAAATCAACAAGTTGT------------GGTAAATATGGAGCTCGCTTCCTCTTTTTTTT
GCATGGTAATACGTGTCTCATTCATATCATAAATAACAAAGTACAAGTCACGTAAAGACCGACATGAC------------
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------------------------AAAACTGAAAAGATAGCAGAACATCTCTGAGCTTGACACCAACGCCCGTCACCTGC
CTCCGGCACCACTACAGTAGCCATCGAAGAAAAGAAT-GATGAATCACCTTCTCACCCGAGCTCGACGCGGCTCCATCGC
TGATATGCAGCTTTGCGGACCTCCAAGGTGGCTCACCAAAAGTGAAGCCCTTACCGTTGAACGAATCAGACCGGGGCAAC
ACCCCGAACACGCCATCGAACTCCAGATCTAGCACCCCACCACGACTAAAACGCCGAAGGAGGAAACCA-----------
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--TATCTACCATCCACGAACCACGAGCCCA--------------------------------------------------
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--------GCACATGCTCCGTCTTCCAGATGTCGTCGATGTAGACCACAATCTGCATCCGCTCCTGGACTACCTCCCAAG
CTCCGCGCCGACGCTGGAGCAAACGCCGTCGCAACGGCGGAGCCCGAGGACACATGTCCACCACGAGGATGCCGCCGCCG
CCACGCCATCCTTGCTTGAATAGACTGGTTTCCAAATCCATCCCTAACCATAGGACCGATGGCCTTGTCAGGGAAGGATC
CGAAGAA-----------------------------------------------------TCTTTATTCAGCGTTGTCAT
CGTCGTCGCCGAAGCAAAGACGATGAACAACCTAAAAACCTAGACTACAAGAGTAAAAACGATCCACACGCGTGGATCCG
GCGGGCCCCCTCATCACCGACGACCGAGGTCGCCGGCGGAGAGGAGCCGCCGGAGAGCGGCGTTGGAAGATCGGCCTCCC
CTGGCAGTGGCTAGGGTTCCAGCTCGCTCCCTCGCACACACTGGTAGGTCGCTAGGTCGACACCT-GTACTCCCACCATT
TCTTTTTTTGCT--AAACCAACTCATAAATA-AAATTTAAAAACACAGTAGGAGAATCGAACCCACGACCTCAT--ACAC
GTTGAAGACGGACGGGGAAAACCTGCCACTGCACCAACAACGACTTTGTGAACTTCTTGAGCTCCGAACTAATATATTCC
TAGCTCAGAAAATTTTGAATTCAAATTATGTTTCAAAAATTCG-AGCGGTTTTTCCTCGGAATTT---------------
-----------------------------------------------------------------TGCGGTTACCGCGGT
ATCCGCGTTTCTCGCCCACCTTCGGAATTTTGTTGGGATTTG--------------------------------------
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------------------------GTAGCCAAAACGTTG-----------------------------------------
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>chr7B_1
GGGTACCGGGCGGAAAATTCGGATACCGCCCGGTACCCGCGTTTCTCGCTACCCCACGAGAAAGCTGCATATCGAGCAAA
AAAAATCGGATTTTTTG--AAATTTTTGAATTTGAACGGCTACAGCGAGGTCAAGTGC----------------------
------GACAGAAACTCCTCTAAACTAACAAGTTGTTTATGGTCTGGTGGTAAGTATGAAGCTCCTTTCCTTGA------
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-----------------------------------ACACAGCGGTAGGTCGCTAGTTCGATACCGGGTACGCCCATCTTT
TCTATTTTTTGCTAAAAGCAACTCATAAATAAAAATTTAAACACACAGTAGGAGAATCGAACCCACGACCTCTCACACAC
GTTGAAAACAGACAAGGAGAACCTGCCACTACACCAACAGCGAGTTTGTGAACTTGTCGAGCTCCAAACTAATATATTCC
TAGCTCAGAAATTTTTGAATTCAAATTATGTTTGAAAAATTCG-AGCGGTTTTTCTTCGGAATTT---------------
-----------------------------------------------------------------T---------GCGGT
ATCCGCGTTTCTCGCCCACCCTCGGAATTTTGTTGGGAATCG--------------------------------------
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------------------------GTAGCCAAATCGTTGT----------------------------------------
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>chr2D_481
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------------------------------GTTCATACCTCTTATCACACTTACATGTGCTTATATAAT-CCCTTTTGTA
ATCTGTCAAACGATGGATTGCAAAACTTGAATAATATATTCAGGTAGGGGA-----------------------------
--------------------------------ACCCCCGGCGATTTCTCAAAA---------------------------
--------------------------AAGAAAAAAAAACATGTTGCACCTTTTTTATTTT--------------------
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-----------GCCACCGAACTCCACCAGTAGAACAAACAACCTCATTTTCAGGTTTCAGCACTATGGATTTATATGAAA
AAGTGGTACGTTTGTGATAGAGGACATTTGGCAATTGTATGGCCCTGGTTTACTCCTAATAATAGCAGTTAGTTACATAT
GTCTGGTGCTGAATGCATCTCCTTGCATGACGTCGGTGCTGTGTGGTTCTGCACATACAAGCCTTGTGGCGGTGCTCAAT
AACGCAATTCCATGGATGCTGCTAGCTGTTGGCGTTCGTATATAACCTCAAGCTCGCACTGGGTTTCTAATCCG-CACTC
AGTTTTTCCCAGCCCTAAGGAAGTGTAGTTCACATCCCCCTTTAACCCTTTTAACACCTACCAAAAATGGCGTCATCACA
CAAGTTCTTCCCGGCCGTCCTCCTCCTCCTGCTGCTGGTTGTCGCCATGGGTAAGCAACTAGGCACGTTTTATGG-TT-A
TTATCTGCTAATATATTTCTTTCTGGTGTGTATCAACTCT----ATGCTCATACGAATCAATATGCATGCTACCTAATGA
TTTATGCTTCAAAATAATGACGGGCAATCGACGTTTTGTGTTCAGAGGTGGCGCCGGCGCAGGCGGAGGAGCCGAGGGTG
TGCGAGACGGATAGCACTCGGTTCAAGGGGATATGCATGGTTGGCACAAACTGCGCCAACATTTGCCTCACCGAGGGCTT
CACCAGCGGCAAGTGCTCTGGCTTGAAGAGGAAGTGCATTTGCACCAAA-------------------------------
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-----CCATGCTAGCTAGACTGATAAAACGT----GGTAATGACCGTAAATACCTATAGATCTGTTCTCAAGATGGTCTG
AGTCACATCGATCTGCCGTGCATGCCTCTG-CATACTTCAGGTTCACGGCATCGCGATGTTCTTTCTTCAG---TTACTA
TGAAGGATATAATTTTATTTCTT---------------------------------------------------------
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----------------------------------------------------------------------TCAA--CAAG
CTAGAAGATGTATGGTCTAAGCATGCAAGTGTTCATTGTATTC---T---------------------------------
------------------------ATCATATGTGTATTTTTTTGACCCTTTTCTCTATGTTATTACAGTTTTTATTGCTG
ATCAATTTGATTTCTTGTCGTAATAACAGTTATAAGAGAGCTCCCTTTATATTACCATATGTATAT---------GCTGT
TTGAGATTTCTTAAATTGCACTCAGACTTTAC------------------------------------------------
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>chr2A_481
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------------------------------GTTCATACCTCTTATCACACTTACACATGCTTATATAAT-CCCTTTTGTA
ATCTGTCAAACGATGGATTGCAAAACTTG-ATAATATATTCAGGTAGGGGAGTCGAACTGAACTGCTAGACTACGTTGAG
TGATGAACTCAATGATTAAAAAAAAAAACTGAACCCCCGGTGATTTCTCAAAA---------------------------
--------------------------AAGAAAAGAAA-CATGTTGCACCTTTTTTATTTT--------------------
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-----------GCCACCGAACTCCACCAGTAGAACAAACAACCTCATTTTCATGTTTCAGCACTATGGATTTCTATGAAA
AAGTGGTACGTTTATGATAGAGGACATTTGGCAATTGTATGGCCCTGGTTTACTCCTAATAATAGCAGTTAGTTACATAT
GTCTGGTGCTGAATGCATCTCCTTGCATGACGTCGGTGCTGTGTGGTTCTGCACATACAAGCCTTGTGGTGGTGCTCAAT
AACGCAATTCCATGGATGCTGCTAGCTGTTGGCGTTCGTATATAACCTCAAGCTCGCACTGGGTTTCTAATCCGTCACTC
GGTTTTTCCCAGCCCTAAGGAAGTGTAGTTCACATCCCCCTTTAACCCTTTTACCACCTACCAAAAATGGCGTCATCACA
CAAGTTCTTCCATGCCGTCCTCGTCCTCCTGCTGCTGGTTGTCGCCATGGGTAAGCAACTAGGCACGTTTTATGGTTT-A
TTATCTGCTAATATATTTCTTTCTGGTGTGTATCAAATCT----ATGCTCATACGAATCAATATGCATGCTACCCAATGA
TTTATGCTTCAAAATAATGACGGGCAATCGACGTTTTGTGTTCAGAGGTGGCGCCGGCGCAGTCGGAGGAGGCGAGGGTG
TGCGAGACGGATAGCACTCGGTTCAAGGGGATATGCATGGTTGGCACAAACTGCGCCAACATTTGCCTCACCGAGGGCTT
CACCAGCGGCAAGTGCTCCGGCTTGAAGAGGAAGTGCATTTGCACCAAA-------------------------------
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-----CCATGCTAGCTAGACTGATAAAACGTGGATGGGAATGACCGTAAATACCCATAGATCTGTTCTCAGGATGGTCTG
AGTCACATCGATGTGCCGTCCATTCCTCTGACATACTCCAGGTTCACGGCGTCGCGATGTTCTTTCTTCAG---TTACTA
TGAAGGATATAATTTTATTTCTT---------------------------------------------------------
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----------------------------------------------------------------------TCAA--CAAG
CTAGAAGATGTATGGTCTAAGCATGCAAGTGTTCATTGTATTC---T---------------------------------
------------------------ATTATATGTGTATTTTTTT-ACCCTTTTCTCTATGTTATTACAGTTTTTATTGCTG
ATCAATTTGATTTCTTGTCGTAATAACAGTTATAAGAGAGCTCCCTTTATCTCACCATATGTATAT---------GCTGT
TTGAGATTTCTTAAATTGCACTCAGACTTTAC------------------------------------------------
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>SNPs
-------------------------------------S-------------------------S----------------
----------------------S-------S-----S------SS-----------------------------------
----------S-------S-----------------S-S----S----------------S-------------SSSSSS
SSS-SSSSSSSSSSS--S--SSSSSSSSSS-SSS---SS-SS--SSS----SS-SSSSSSSSSSS---SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S-------------S---------------S----S----------
-S------------------------------------S--------S--------------------------------
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--------------------------------S-----S-----------------------------------------
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-----------------SS---------------------S-------------------------------S-------
-------------------------------------------------------------S------------------
-------------------------------------------------------------------------------S
S-------------S-----------------S---------------------------------------S-------
------------------------SS------------------------S---------S---S---------------
------------------------------------S------S----------------------S-----------S-
---------S--------S-----------------SSSSSSSS-----S-----------S-S--------S-------
-----------------S--S-SSS-------S-------------------S-----------S-------S-------
-----------------------------------------------------------S--------------------
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------------------------------------------------------------S-----------------S-
----------------------S------S-----------------------S------------------SS------
----------S-S-------------------------------------------------------------------
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S------------------------------------------SS-----------------------------------
-------------------------S---------------S-S---S-----------S--------------------
------------------S---------S------------------------------------------------S--
-----------------------S--------SS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS-------S---S--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS
>forward_300
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----------------------------------------CGACCTCTCACACACGTTGA--------------------
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>reverse_2607
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----------------------------------------------AGGGAAGTTGTTGCTAGGCC--------------
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