>input_sequence_81715
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--ATGGCGTCGCCTTCACCTTCGTTCCTCCTCCAGCTGGTCCGGTACGTGTCGTCCCTCCCGAGCCAGGTCATGGGGGCG
ACGGCGAGGGCGCTCCCTGCAGCCTCGAGGGAAGGCGCCGGCGGGGCGATCCGTCCGTCATTCGCTGCCCCCGCGCCGCA
GCGGCCAGGCGCCCCGGCAGAGGGCGCCGGCGGCCAGGGTGGGATCATCCATGAGGCTTCTCCCGTCCCGCTAGAGCTGA
TGAGTGCGGCGGCAAGAGCGGCGCCTCCGATGCAAGGCGCTGGCGGCAACAGGACCCATGCACCCACGGCCGGACTTATG
GGGCCACAGCGGCCCGGGGCGCCCAAAGAAGGCGCCGGCGGCCGCGGCGGGATCATCCATGCGGCTTCCTCTTGA-----
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>chr6B_1_TraesCS6B01G116100
ATGTGCGGCGGATGGATGAGAGGTATGGACCGGTGGCAAGCGGAGTGGTGACTGAGTGTAGCGAATAGCTTAGCGGGCGG
CCGGGGCGGTAGAGCGGCGGAGTTGGCGATGAAGGAAGTGGATGCAGAGAAAGAGGAAAGAATGGAGAAGCGGGGTTTTG
GATGAGATTTTAGGTGGGCGGGGGGTGTCAAGGTTCTACGTGGCGATGATCCGGACTCCCGCAAAGCCCCCTGCCACCCA
CCTCCTAGTTTGCTTTCATTTTGCGAGAAAACAAATAACCGGACCGGTGCACTCACCGATGCGGGATAGTGTTAGATGAC
AAATTGTATCTGGATATCGTGGTCCGGACGGATGCAGATGATTTGAGGGTCCATTATGGAGATGCCCTAATGCGACGCCC
TAACTGGCGTAGCTCTCATACGTGGGTCCAGTTCAATATAGGGCATCAATCAAACGGAATTGCTTTCAACAAGACCATAT
ACATTCCCTAAAAAAAACAAGACCATATATTCCAGGCCCATTCTCTTTGTC---AACCAC--------------------
---------TTAATGGGTCCAGGCAGTGAAGTGCATGTGCATTTTGTGG-GCACTTCAGCTAATCGCCGTTGACTAATTG
CCAGCAGAGCCGCGTCCAGACGAACGCATCCACGCCGTTGAACTGAACCGTACGTATACGTTGGATTCATTCAAAGTCTC
GGAGTTCTTGCGAGTCGCAAGCGACCGGAGATGGAGCATTCCACGCGGACGGTACGTTTTGGTGGCTCGGACCGGTTCAG
TGGCTAACTTGGGTCGCCCCCGAGCTTGCTCCGCGCGCGTCCACCACGCGGCACCCATGAATAGAGCACGTCAGCGGCTT
CCATGCAAAAGAAACACAGCTAGCGACCCATTAAAAGACGACCGAGAAAGGGAGAAAGAAGAGAAGACCCTTTTGCGCAG
TTGCACCGTTGTAC---------GGGCCAGACCGGTCGCCAAAAGCTTGTGCTCGTCCCACCTTCGCGACAGCTAATCGG
CAATGGCGTCGCCTTCACCTTCGTTCCTCCTCCAGCTGGTCCGGTACGTGTCGTCCCTCCCGAGCCAGGTCATGGGGGCG
ACGGCGAGGGCGCTCCCTGCAGCCTCGAGGGAAGGCGCCGGCGGGGCGATCCGTCCGTCATTCGCTGCCCCCGCGCCGCA
GCGGCCAGGCGCCCCGGCAGAGGGCGCCGGCGGCCAGGGTGGGATCATCCATGAGGCTTCTCCCGTCCCGCTAGAGCTGA
TGAGTGCGGCGGCAAGAGCGGCGCCTCCGATGCAAGGCGCTGGCGGCAACAGGACCCATGCACCCACGGCCGGACTTATG
GGGCCACAGCGGCCCGGGGCGCCCAAAGAAGGCGCCGGCGGCCGCGGCGGGATCATCCATGCGGCTTCCTCTTGATCAGC
ACATCTGAGGTCAGGTGCATGCACTTTCGGGATGACACGACGGATGAAGAGGAACAAGAAAATCGAGATTAGTTTAAAAA
A--TACAGGTTCATTAATTTACTGATTCGGGTACGCACAGTTCGAGATGTAACACATGTCCAGTGTGCGTACGCGCTTCA
GGTTCAGATAAATTGCCTGAATTTCGCCGGGAGTCGTAGAATCTACAAATCGACGTCACT--------------------
----TCACTAGATCACCCGTTGTGCCAAATGGCCCATGAGACATAAATTGGCGTTGAAGCCTATGCCAAATAATGTGGTG
TTACTC----GG-------TTTTTTATGTAAGAGGCAAGAGTTGTTGCTTCATCTATTTCTGAACATGTTTCTATATGTT
GTCATAGTTAGGCTGGTGTAATATGTAAAAGATGATGTTCCACAAAGATGAAACCAACCCATAAAGACATGGAATTAGTA
CTTCTATATGATTAAGCATAGGTCCAGATGCGATGAATATTTAC----------------------------CAACCATA
CAAACTAAACCCAGGCTTGGTAGCCTTAACCCTAATGATAGGTATATTAAACATGTTTACTCGATGATGATGCTTAAGAG
AAGTGACCCACATGGTGGGCTTGT--------------------------------TTCTTTTAAGAACTAGATTTTGGT
TAAGTCTAAAAACCAGAATGCCTGCATGGACAAATTAACAAACTTGATGCATTGGGAGACTGAGAAACTCGCAAAAGAAG
TAAAAATGAAGTGCTCGGAAAACAATATATGAATGCAAATGACATTTCAAACATTTCATGG----GCAGTGCCACATTAC
CTGGATGTTTTGCAGCTATTTTCCAAATGGAAACAGCGAATAAAACAAATAAGTTCAGATTAGAGTAGCAAAGACTTATT
ATTGCAATTAACAAGAGAAATAGGATCATAAGAAGTAATCTTGAATCAAACCCACCTCTTGTCTTTATTGTAATAGCAAG
AGAAACATCGTCATGCTGTTTAGGGTCCTAATATGCATATAGAAAGTACTGTTTCT
>chrUn_249
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--------TTTGCTTTCGCTTTGCG-GAAAATAAACAACCGGACTGGTCCACAAACCGATGGATGACGGTGTTAGATGAC
AAATTGCATCAGAATATCATGGTCCGGACGGATGTGGGCGATTTGAGGGTTTGCTTTGATGATGCCCTAATGCAGCGCCT
CAGCTGGCGTAGCTCTCATACGTGGGTCCAGCTCAACCATGGGTATACATCGAACAGAATTGCTTTC-------------
---------------AACATGATCAT---TTCCCGCCCCATTCTCTTTGTTAATAACCATTTAATGGGTCGAGGTTGTTT
CAAAAAAAATTAATGGGTCGAGGCAGTTGAGTGCATGTGCATTTTGTGGGGCGCTTCAGCTAATCGCGATCGACTAATTT
T---------------CACACGAACGCATCCACGTCGTTGAACTGAACCGTACGTATACGTCGGAATCCTTCAAACTCTC
GAAGTTCTTGCGAGTCGCAAGCGACGGAAGATGGAGCATTCCACGCGGACGGTACGTTTTGGTGGCTCGGACCCGTTCAG
TGGCTAACTTGGGTCGCCCCCGAGCTTGCTCCGCGCGCGTCCACGACGTGGCCCCCGTAAATAGAGCTCGTCAGCGGCAT
CCATGCAAAAGAAACACAGCTAGCGACCCATTAAGGG--GACGGAGAAAGGGAGAAAGGAGAGACGACACTTTTA-----
---CACCGTTGCAC---------GGAGCAGACCGGTCACCGGAAGCTTGTGCTCGTTCCACCTTTGCCGCAGCTAATCGA
CAATGGCGTCGCCTTCACCTTCGTTCCTCCTCCAGCTGGTCCGGTACGTGTGGTCCCTCCCGAGCCAGTTCATGGGGGCG
ACGGCGAGGGCGCTTC---CAGCCTCGAGGGAAGGCGCCGGTGGGGCGATCCGTCCGTCATTCGCCGCCCCCGCGCCGCA
GCGGCCAGGCGCGCCGGCAGAGGGCGCCGGCGGCCAGGGTGGGATCATCCATGAGGCTTCTCCCGTCCCGCTAGAGCTGA
TGCATGTGGCGGCAAGGGCGGCGCCTCCGATGCAAGGCGCTGGCGGCAACAGGACCCATCCGCGCACGGCCGGACTTATG
GGGCCACAGCGGCCCGGGGCGCCGAAAGAAGGCGCCGGCGGCCGCGGCGGGATCATCCACGCGGCTTCCTCTTGATCAGC
ACAC-----GTCAGGTGCATGCATTTTCGGGATAACACGAAGGCTGAAGAAGAACAAGAAAATCGAGATTAGTTAAAAGT
TATTACAGGTTCATCGATTTACTGATTCGGGTACGCACAGTTCGAGATGTAACACATGTCCAGTGTGCGTACGCGCTTCA
GGTTCAGATAAATTGCCTGAATTTCGCCGGGAGTCATAGAATCAACAAATCGACGTCACT--------------------
----TCACTAGATCACCCGCTGTGCCAAATGGCCCATGAGACATAAATTGGCGTTGAAGTCTATGCCAAATAATGTGGTG
TTACTCTTATGG-------TTTTTTACGTAAGAGGCAAGAGTTGTTGCTTCATCTATTTCTGAACATGTTTCTATATGCT
GTCATAGTTAGGCTGGTGTAATATGTAAAAGATGATGGGACACAAAGTTGAAAACAGCACATAAAGACATGGAATTAGTA
CTTC--TATGATTAAGCATAGGTCCAAATGCGATGAATATTTACATTCAATGAT--AAAAAAAAATTGCTACCAACCATA
CGAACTAAACCCAAGCTCGGTAGCCTTAACCCTAATGATAGGTATATTAAACATGTTTACTCAATGGTGATGCTTAAGAG
AAATGACGCACATGGAGGGCTTCGTTCTTTTTTTTTTTTTGCGAATGTGGGCTTCGTTCTTTTAAGAACTAGATTTTGGT
TAAGTCTAAAAACCGGAATGCCTGCATGGACAAATTAGCAAACTTGATGCATTGGGAGACTGAGAAACTCGCAAAAGAAG
TAAAAATGAAGTGCTCAGAAAACAATATATCAATGCAAATGACATTTCAAACATTTCATGGGCGCGCAGTGCCTCATTAC
CTGGATGTTTTGCAGCTATTTTCCAAATGGAAACAGCGAATAAAACAAATAAGTTCAGATTAGAGTAGCAAAGACTTATT
ATTGCAATTAACAAGAGAAATAGGATCATAAGAAGTAATCTTTAATCAAACCCACCTCTTGTCTTTATTGTAATAGCAAG
AGAAACATAGTCATGCTGTTTAGGGTCCTAATATGCATATAGAAAGTATTGTT---
>chr6A_496
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---------------AACATGACCAT---TTCCCGCCCCATTCTCTTTGTTAATAACCAT--------------------
---------TTAATGGGTCGGGGCAGTTGAGTGCATGTGCATTTTGTGG-GCGCTTCAGCTAAGCGCCATTGACTAATTT
T---------------CACACGAACGAATCCACGTCGTTGAACTGAACCGTACGTATACGTTGGAATCCTTCAAACTCTC
GGAGTTCTTGCGAGTCGCAAGCGACCGGAGATGGATCATTCCACGCGGACGGTACGTTTTGGTGGCTCGGACCCGTTCAG
TGGCTAACTTGGGTCGCCCCCGAGCTTGCTCCGCGCGCGTCCACCACGCGGCCCCCATGAATAGAGCTCGTCAGCGGCAT
CCATGCAAAAGAA-CACAGCTAGCGACCCATTAAAAGACGACCGAGAAATG--GAAAGAAGAGAAGACACTTTTA-----
---CACCGTTTGCACCGTTGCAAGGGCCAGACCGGTCACCGGAAGCTTGTGCTCGTTCCACCTTTGCCGCAGCTAATCGA
CAATGGCGTCGCCTTCACCTTCTTTCCTCCTCCAGCTGGTCCGGTATGTGTCGTCCCTCCCGAGCCAGTTCATGGGGGCG
ACGGCGAGGGCGCTCCCTGCAGCCTCGAGGGAAGGCGCCGGTGGGGCGATCCGTCCGTCATTCGCCGCCCCCGCGCCGCA
GCGGCCTGGCGCGCCGGCTGAGGGCGCCGGCGGCCAGGGTGGGATCATCCATGAGGCTTCTCCCATCCAGCTAGAGCAGA
TGCATGTGGCGGCAAGGGCGGCGCCTCCGATGCAAGGCGCTGGCGGCAACAGGACCCATCCACCCATGGCCGGACTTATC
GGGCCACAGCGGCCCGGGGAGCCAAAAGAAGGCGCCGGCGGCCGCGGCGGGATCATCCATGCGGCTTCCTCTTGATCAGC
ACAC-----GTCAGGTGCATGCATTTTCGGGATAACACGAAGGCTGAAGAAGAACAAGAAAATCGAGATTAGTTCAAAGT
TTTTACAGGTTCATCGATTTACTGATTCGGGTACGCACAGTTCGAGATGTAACACATGTCCAGTGTGCATACGCGCTTCA
GGTTCAGATAAATTGCCTGAATTTCGCCGGGAGTCCTAGAATCTACAGGTCGACGTCAAAACATCTCAGTATTATCTATT
ATGCTCACTAGATGACCTGTTGCGTCAACTGACCCGTGAGACATAAGTTGGCGTTAAAGTGTATGCCAAATAATGTGGTG
TTACTCAGACTACCTTGGTTTTTATATCTAAGAGGCAAGAGTTGCTGCTTTATCTATTTCTGAACATGTTTCTATATGCT
GTCATAGTTAGGCTGTTGTAATATGTAAAAGATGATGTTCCACAAAGATGAAAACAACACATAA----------------
--------------AGCATAGGTCCAGATGCGATAAATATTTACATTCAATGATTAAAAAAAATATTGCTACCAACCATA
CGAACTAAACCCAAGCTCAGTAGCCTTAACCCTAATGATAGGTATATTAAACATGTTTACTCTATGATGATGCTTAAGAG
AAATGGCGCACATGG--------------------------------TGGGCTTCGTTCTTTTAAGAACTAGATTTTGGT
TTAGTCT-AAACCCAGAATGCCTGCATGGACAAATTAACAAACATGATGCATTGGGAGACTGAGAGACTCGCAAAAGAAG
TAAAAATAAAGTGCTCAGAAAACAATATAGCAATGCAAATGACATTTCAAACATTTCATGGGC----AGTGCCCCATTAC
CTGGATGTTTTGCAGCTATTTTCCAAATGGAAACAGCGAATAAAACAAATAGGTTCAGATTAGAGTAGCAAAGACTTATT
ATTGCAATTAACAAGAGAAATAGGATCATAAGAAGTAATCTTGAATCAAACCCAACTCTTGTCTTTATTATAATAGCAAG
AGAAACATCGTCATGCAGTTTAGGGTCCTAATATGCATATAGAAAGT---------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS---------SS------S-----S---S--------S---S---SS-------SSS--SS------------
------S---S-S-----S---------------SS-SS-----------SSSS-S--SS-------------SS----S
S-S----------------------------S----SSSS---S--SS---S---S-----------SSSSSSSSSSSSS
SSSSSSSSSSSSSSS----S------SSS----S-S--------------S--------S--------------------
-------------------S-------SS-----------------------S---------------S----------S
SSSSSSSSSSSSSSSS--S---------------S------------------------------S--S------S----
-------------------------------------------------------------------------S------
----------------------------------------------------S--------------S----------S-
--------------------------------------------------------------------S-----SSSSSS
SSS--------S-------------------------S--SS--------------S-------S--SS----------S
--------------------------------------------------------------------S-----------
-----------------------------------------S-----------------------S--------------
------------S-------------------------------------------------------------------
--SS--S---------S------------------------------------------S--------------------
-----------------------S--------------------------------------------------------
---SSSSSS--------------S---------S------S--S------S-----------------------S---SS
S-------------SS----------------------------------------------------------------
-----------------------------------S--------------------------------------------
-----------------------------------------------------------S--------------------
------------------------------------------------------------------------------S-
-----------------------------------------------------S----S---------------------
----SS--------------------------------------------------------------------------
-S-----------S---S--------------------------------------------S-----------------
--S----S-------S------SS--------------------------------------------------------
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----------------S-------------S------------------------------------------S------
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------------------------------------------------S----SSS
>forward_213
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---------------------------------TTCTACGTGGCGATGATCCG---------------------------
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>reverse_1474
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---------------------------------GACACGACGGATGAAGAGGA---------------------------
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