>input_sequence_81709
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--------------------------------------------------------------------------ATGGCG
TCGCCTTCACCTTCTTTCCTCCTCCAGCTGGTCCGGTATGTGTCGTCCCTCCCGAGCCAGTTCATGGGGGCGACGGCGAG
GGCGCTCCCTGCAGCCTCGAGGGAAGGCGCCGGTGGGGCGATCCGTCCGTCATTCGCCGCCCCCGCGCCGCAGCGGCCTG
GCGCGCCGGCTGAGGGCGCCGGCGGCCAGGGTGGGATCATCCATGAGGCTTCTCCCATCCAGCTAGAGCAGATGCATGTG
GCGGCAAGGGCGGCGCCTCCGATGCAAGGCGCTGGCGGCAACAGGACCCATCCACCCATGGCCGGACTTATCGGGCCACA
GCGGCCCGGGGAGCCAAAAGAAGGCGCCGGCGGCCGCGGCGGGATCATCCATGCGGCTTCCTCTTGA-------------
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>chr6A_1_TraesCS6A01G086100
GGCGGGCGGCCGGGGCGGTAGGACGGCAACGTCGGGCCATGGAGGAAGCGGATGCAGAGAAAGAGAAAGAGGAAAGATGG
AGAGGCGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTTGCGCTTTGCGGGAAAACAAACAACGGACTGGTCCACAAACTCAT
GTGTGACGGTGTTGGATGACAAATTACGTCATAG-----TGGTTCGGACGGATGTGGGCGATTTGAGGGTTCGCTTAGCT
GATGCCCTAATGCAGCGCCTCAGCTGGCGTAGCTTTCA------------------------------------------
--------ACATGACCAT---TTCCCGCCCCATTCTCTTTGTTAATAACCAT----------------------------
-TTAATGGGTCGGGGCAGTTGAGTGCATGTGCATTTTGTGG-GCGCTTCAGCTAAGCGCCATTGACTAATTTT-------
--------CACACGAACGAATCCACGTCGTTGAACTGAACCGTACGTATACGTTGGAATCCTTCAAACTCTCGGAGTTCT
TGCGAGTCGCAAGCGACCGGAGATGGATCATTCCACGCGGACGGTACGTTTTGGTGGCTCGGACCCGTTCAGTGGCTAAC
TTGGGTCGCCCCCGAGCTTGCTCCGCGCGCGTCCACCACGCGGCCCCCATGAATAGAGCTCGTCAGCGGCATCCATGCAA
AAGAA-CACAGCTAGCGACCCATTAAAAGACGACCGAGAAATG--GAAAGAAGAGAAGACACTTTTA--------CACCG
TTTGCACCGTTGCAAGGGCCAGACCGGTCACCGGAAGCTTGTGCTCGTTCCACCTTTGCCGCAGCTAATCGACAATGGCG
TCGCCTTCACCTTCTTTCCTCCTCCAGCTGGTCCGGTATGTGTCGTCCCTCCCGAGCCAGTTCATGGGGGCGACGGCGAG
GGCGCTCCCTGCAGCCTCGAGGGAAGGCGCCGGTGGGGCGATCCGTCCGTCATTCGCCGCCCCCGCGCCGCAGCGGCCTG
GCGCGCCGGCTGAGGGCGCCGGCGGCCAGGGTGGGATCATCCATGAGGCTTCTCCCATCCAGCTAGAGCAGATGCATGTG
GCGGCAAGGGCGGCGCCTCCGATGCAAGGCGCTGGCGGCAACAGGACCCATCCACCCATGGCCGGACTTATCGGGCCACA
GCGGCCCGGGGAGCCAAAAGAAGGCGCCGGCGGCCGCGGCGGGATCATCCATGCGGCTTCCTCTTGATCAGCACAC----
-GTCAGGTGCATGCATTTTCGGGATAACACGAAGGCTGAAGAAGAACAAGAAAATCGAGATTAGTTCAAAGTTTTTACAG
GTTCATCGATTTACTGATTCGGGTACGCACAGTTCGAGATGTAACACATGTCCAGTGTGCATACGCGCTTCAGGTTCAGA
TAAATTGCCTGAATTTCGCCGGGAGTCCTAGAATCTACAGGTCGACGTCAAAACATCTCAGTATTATCTATTATGCTCAC
TAGATGACCTGTTGCGTCAACTGACCCGTGAGACATAAGTTGGCGTTAAAGTGTATGCCAAATAATGTGGTGTTACTCAG
ACTACCTTGGTTTTTATATCTAAGAGGCAAGAGTTGCTGCTTTATCTATTTCTGAACATGTTTCTATATGCTGTCATAGT
TAGGCTGTTGTAATATGTAAAAGATGATGTTCCACAAAGATGAAAACAACACATAA------------------------
------AGCATAGGTCCAGATGCGATAAATATTTACATTCAATGATTAAAAAAAATATTGCTACCAACCATACGAACTAA
ACCCAAGCTCAGTAGCCTTAACCCTAATGATAGGTATATTAAACATGTTTACTCTATGATGATGCTTAAGAGAAATGGCG
CACATGG--------------------------------TGGGCTTCGTTCTTTTAAGAACTAGATTTTGGTTTAGTCT-
AAACCCAGAATGCCTGCATGGACAAATTAACAAACATGATGCATTGGGAGACTGAGAGACTCGCAAAAGAAGTAAAAATA
AAGTGCTCAGAAAACAATATAGCAATGCAAATGACATTTCAAACATTTCATGGGC----AGTGCCCCATTACCTGGATGT
TTTGCAGCTATTTTCCAAATGGAAACAGCGAATAAAACAAATAGGTTCAGATTAGAGTAGCAAAGACTTATTATTGCAAT
TAACAAGAGAAATAGGATCATAAGAAGTAATCTTGAATCAAACCCAACTCTTGTCTTTATTATAATAGCAAGAGAAACAT
CGTCATGCAGTTTAGGGTC
>chrUn_352
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-------------------------------TGCTTTCGCTTTGCGGAAAATAAACAACCGGACTGGTCCACAAACCGAT
GGATGACGGTGTTAGATGACAAATTGCATCAGAATATCATGGTCCGGACGGATGTGGGCGATTTGAGGGTTTGCTTTGAT
GATGCCCTAATGCAGCGCCTCAGCTGGCGTAGCTCTCATACGTGGGTCCAGCTCAACCATGGGTATACATCGAACAGAAT
TGCTTTCAACATGATCAT---TTCCCGCCCCATTCTCTTTGTTAATAACCATTTAATGGGTCGAGGTTGTTTCAAAAAAA
ATTAATGGGTCGAGGCAGTTGAGTGCATGTGCATTTTGTGGGGCGCTTCAGCTAATCGCGATCGACTAATTTT-------
--------CACACGAACGCATCCACGTCGTTGAACTGAACCGTACGTATACGTCGGAATCCTTCAAACTCTCGAAGTTCT
TGCGAGTCGCAAGCGACGGAAGATGGAGCATTCCACGCGGACGGTACGTTTTGGTGGCTCGGACCCGTTCAGTGGCTAAC
TTGGGTCGCCCCCGAGCTTGCTCCGCGCGCGTCCACGACGTGGCCCCCGTAAATAGAGCTCGTCAGCGGCATCCATGCAA
AAGAAACACAGCTAGCGACCCATTAAGGG--GACGGAGAAAGGGAGAAAGGAGAGACGACACTTTTA--------CACCG
TTGCAC---------GGAGCAGACCGGTCACCGGAAGCTTGTGCTCGTTCCACCTTTGCCGCAGCTAATCGACAATGGCG
TCGCCTTCACCTTCGTTCCTCCTCCAGCTGGTCCGGTACGTGTGGTCCCTCCCGAGCCAGTTCATGGGGGCGACGGCGAG
GGCGCTTC---CAGCCTCGAGGGAAGGCGCCGGTGGGGCGATCCGTCCGTCATTCGCCGCCCCCGCGCCGCAGCGGCCAG
GCGCGCCGGCAGAGGGCGCCGGCGGCCAGGGTGGGATCATCCATGAGGCTTCTCCCGTCCCGCTAGAGCTGATGCATGTG
GCGGCAAGGGCGGCGCCTCCGATGCAAGGCGCTGGCGGCAACAGGACCCATCCGCGCACGGCCGGACTTATGGGGCCACA
GCGGCCCGGGGCGCCGAAAGAAGGCGCCGGCGGCCGCGGCGGGATCATCCACGCGGCTTCCTCTTGATCAGCACAC----
-GTCAGGTGCATGCATTTTCGGGATAACACGAAGGCTGAAGAAGAACAAGAAAATCGAGATTAGTTAAAAGTTATTACAG
GTTCATCGATTTACTGATTCGGGTACGCACAGTTCGAGATGTAACACATGTCCAGTGTGCGTACGCGCTTCAGGTTCAGA
TAAATTGCCTGAATTTCGCCGGGAGTCATAGAATCAACAAATCGACGTCACT------------------------TCAC
TAGATCACCCGCTGTGCCAAATGGCCCATGAGACATAAATTGGCGTTGAAGTCTATGCCAAATAATGTGGTGTTACTCTT
ATGG-------TTTTTTACGTAAGAGGCAAGAGTTGTTGCTTCATCTATTTCTGAACATGTTTCTATATGCTGTCATAGT
TAGGCTGGTGTAATATGTAAAAGATGATGGGACACAAAGTTGAAAACAGCACATAAAGACATGGAATTAGTACTTC--TA
TGATTAAGCATAGGTCCAAATGCGATGAATATTTACATTCAATGAT--AAAAAAAAATTGCTACCAACCATACGAACTAA
ACCCAAGCTCGGTAGCCTTAACCCTAATGATAGGTATATTAAACATGTTTACTCAATGGTGATGCTTAAGAGAAATGACG
CACATGGAGGGCTTCGTTCTTTTTTTTTTTTTGCGAATGTGGGCTTCGTTCTTTTAAGAACTAGATTTTGGTTAAGTCTA
AAAACCGGAATGCCTGCATGGACAAATTAGCAAACTTGATGCATTGGGAGACTGAGAAACTCGCAAAAGAAGTAAAAATG
AAGTGCTCAGAAAACAATATATCAATGCAAATGACATTTCAAACATTTCATGGGCGCGCAGTGCCTCATTACCTGGATGT
TTTGCAGCTATTTTCCAAATGGAAACAGCGAATAAAACAAATAAGTTCAGATTAGAGTAGCAAAGACTTATTATTGCAAT
TAACAAGAGAAATAGGATCATAAGAAGTAATCTTTAATCAAACCCACCTCTTGTCTTTATTGTAATAGCAAGAGAAACAT
AGTCATGCTGTTTAGGGTC
>chr6B_513
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-------------------------------------A------------------------------------------
--------ACAAGACCATATATTCCAGGCCCATTCTCTTTGTC---AACCAC----------------------------
-TTAATGGGTCCAGGCAGTGAAGTGCATGTGCATTTTGTGG-GCACTTCAGCTAATCGCCGTTGACTAATTGCCAGCAGA
GCCGCGTCCAGACGAACGCATCCACGCCGTTGAACTGAACCGTACGTATACGTTGGATTCATTCAAAGTCTCGGAGTTCT
TGCGAGTCGCAAGCGACCGGAGATGGAGCATTCCACGCGGACGGTACGTTTTGGTGGCTCGGACCGGTTCAGTGGCTAAC
TTGGGTCGCCCCCGAGCTTGCTCCGCGCGCGTCCACCACGCGGCACCCATGAATAGAGCACGTCAGCGGCTTCCATGCAA
AAGAAACACAGCTAGCGACCCATTAAAAGACGACCGAGAAAGGGAGAAAGAAGAGAAGACCCTTTTGCGCAGTTGCACCG
TTGTAC---------GGGCCAGACCGGTCGCCAAAAGCTTGTGCTCGTCCCACCTTCGCGACAGCTAATCGGCAATGGCG
TCGCCTTCACCTTCGTTCCTCCTCCAGCTGGTCCGGTACGTGTCGTCCCTCCCGAGCCAGGTCATGGGGGCGACGGCGAG
GGCGCTCCCTGCAGCCTCGAGGGAAGGCGCCGGCGGGGCGATCCGTCCGTCATTCGCTGCCCCCGCGCCGCAGCGGCCAG
GCGCCCCGGCAGAGGGCGCCGGCGGCCAGGGTGGGATCATCCATGAGGCTTCTCCCGTCCCGCTAGAGCTGATGAGTGCG
GCGGCAAGAGCGGCGCCTCCGATGCAAGGCGCTGGCGGCAACAGGACCCATGCACCCACGGCCGGACTTATGGGGCCACA
GCGGCCCGGGGCGCCCAAAGAAGGCGCCGGCGGCCGCGGCGGGATCATCCATGCGGCTTCCTCTTGATCAGCACATCTGA
GGTCAGGTGCATGCACTTTCGGGATGACACGACGGATGAAGAGGAACAAGAAAATCGAGATTAGTTTAAAAAA--TACAG
GTTCATTAATTTACTGATTCGGGTACGCACAGTTCGAGATGTAACACATGTCCAGTGTGCGTACGCGCTTCAGGTTCAGA
TAAATTGCCTGAATTTCGCCGGGAGTCGTAGAATCTACAAATCGACGTCACT------------------------TCAC
TAGATCACCCGTTGTGCCAAATGGCCCATGAGACATAAATTGGCGTTGAAGCCTATGCCAAATAATGTGGTGTTACTC--
--GG-------TTTTTTATGTAAGAGGCAAGAGTTGTTGCTTCATCTATTTCTGAACATGTTTCTATATGTTGTCATAGT
TAGGCTGGTGTAATATGTAAAAGATGATGTTCCACAAAGATGAAACCAACCCATAAAGACATGGAATTAGTACTTCTATA
TGATTAAGCATAGGTCCAGATGCGATGAATATTTAC----------------------------CAACCATACAAACTAA
ACCCAGGCTTGGTAGCCTTAACCCTAATGATAGGTATATTAAACATGTTTACTCGATGATGATGCTTAAGAGAAGTGACC
CACATGGTGGGCTTGT--------------------------------TTCTTTTAAGAACTAGATTTTGGTTAAGTCTA
AAAACCAGAATGCCTGCATGGACAAATTAACAAACTTGATGCATTGGGAGACTGAGAAACTCGCAAAAGAAGTAAAAATG
AAGTGCTCGGAAAACAATATATGAATGCAAATGACATTTCAAACATTTCATGG----GCAGTGCCACATTACCTGGATGT
TTTGCAGCTATTTTCCAAATGGAAACAGCGAATAAAACAAATAAGTTCAGATTAGAGTAGCAAAGACTTATTATTGCAAT
TAACAAGAGAAATAGGATCATAAGAAGTAATCTTGAATCAAACCCACCTCTTGTCTTTATTGTAATAGCAAGAGAAACAT
CGTCATGCTGTTTAGGGTC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S----------S---SS--SS-S-----------------SS--
-SS----------S-----------S-S---S-S---------S---------------------------S----S-S-
----------------------------------S---------------------------------------------
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------------S------------------------------------------S------------------------
------------------S-------------------------------------------------------------
---------------------------S----------------------------------------------------
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-----------------------------------------S--------------------------------------
--SSSSSSSSSSSSS-----------------------------------------------------------------
--------------S-----------------------S-----------------------------------------
------------------------------------------------------------------------------S-
----------S---------------------------------------------S---S--------S----------
----------------------------------------------------------S------------S--------
-----------S---S----------------------------------------------------------------
------------------------------------------------------------------S------S------
------------------------------------------------------------S-------------------
---------------------------S-----------SS---------SSSSSSSSSSSSSSSSSSSSSSSSSS----
-----S---S----S-S---S--S---S----------S--------S----S-------------------------SS
-SSSSSSSSSS----S---S----------------S-----S-------------------------------------
-------S------------------------------------------------------------------------
--------------------------S-------------------SS-------S------------------------
----------S-------------------------------------------S----------------------S--
-------------------------------------------------------------------------S------
---S-------------------------------S---------------------S---------------------S
---------------------S-------------------------------------------S--------------
-------------------------------------------S------------------------------------
----------------------------------------------S--------------S------------------
--------S----------
>forward_90
----------------------------------------------------------------------GGAAAGATGG
AGAGGCGAGG----------------------------------------------------------------------
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>reverse_1661
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------------------------------------------------------------ATACGCGCTTCAGGTTCAGA
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