>input_sequence_81703
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----------ATGGGGAACTCGTACAGCAACGGCGGCTCGTCGTCGGGGCACCTGCAGGCGCCGGAGCTGCCGCTGCACC
TCTGCTTCTTCCTACTCGTGCTGTTCGTCTTCCTCGGCTTCTCCTGGTACATGAGCTACGAGTCAGTGGCGGAGACCTTC
GCCGACCAGGGCAAGCTCCTGCTCATGGTGTCCCCGCTCGCGCTGCTCCTCGCGGTGCGGCTGCTGTCGGGAGGCGACGG
CGACGGGCGGCGCGTCGACCAGCTGATGTCCATGTCGATGCCGGAGAGGGACTCCATCCACCGCGCCGGGGGGTCGCCGT
GGGGCGTCGGGCTCCTGCTCGTGCTGCTCATCGTCATGGTCTCCTACCAGTCCAACTTCCGGGAGAGGTGGTTCGCACTC
TAG-----------------------------------------------------------------------------
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>chr5B_1_TraesCS5B01G229900
CGTTATTCTACGTCATGAATGAGTCTTGGCCTGTTCTGTCTGCGTGGGCTTAGTTCTCTCCGAGAAGATGGCCCGTTCTC
CTGCCGGTTCCTCTCATTTTCATCTCCCTGAAACGAATCCCCTA--AAAAAAAAACTCCTTGAAACGAATCAGTAGTGCA
GCACCATCCCT---------------------------------------------------------------------
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-------------------------------------CAAAAAAAAAAACAGTGGAGCAGCACTCGCAAGCACCCCTTCA
GTCGATCAGATCATGTCCGAAGCATAAGTGCAAAAAAGGGATGCGACGAGAGATAACTTGC----CACACGTGACCATCA
CGCAGGGAGCAGGACAGTGGTCGATCCGTACGTACGTGTTGCCCGTAGTAATAATAAAT----AAATACTATAGCTCTGC
AGTGGACTGTCCTAGATCTTGTTATCTTTCGCCATGGCCAGTGATATGATACACAGGAACACGACTGCTAGAAGACATAC
CTGCTGTGTTGTATCCACTTAAGATGGGCTTTCTTAACCACT-AACGACGCAGAGGCCGCAGATCTTGGCAGAGCTCAAG
GGGACACCGGCTCAGATAACAAATGTGCAGATCCCGTCGAC---GCTGCACCGGCCAGCGCACCCTCCGCCCC-ACGGCG
CACGCTCCCCCCACTGCGCCAACCGTCACCGGCCGGTGGCCCCTGTGCTGCACGGGCGCGCTTTACTTAGCCCCGACGCG
CCGGGGATCGGGCTAAGCAAAGCGCTCGCGTCGCGGAGCCCA--------CGTGCGTGCGTGCCGACATGCCGCGTCAGC
CGCTCCAGGGCCGGCCGGTCCGCCGGAACGTGCTCCGTGCCGGGGCGGCTGCTCCGATTGGCCGGCGCGCTCGCCACGTG
TCGCCCCGGGTTCGTCTATAAATAAGCGCCCGCTCGGTCGTCCACTCTCCAACTCTCTCCATCGTCGAATCCCAAAGCTT
CCGCCTCTCTCAAAACCTCAAAAACCACCTG-CAGATCATCCCCTCAGTTCTATCGATCAAGAAGCCGTAGTAGGTGAGG
CCAGTGACCTATGGGGAACTCGTACAGCAACGGCGGCTCGTCGTCGGGGCACCTGCAGGCGCCGGAGCTGCCGCTGCACC
TCTGCTTCTTCCTACTCGTGCTGTTCGTCTTCCTCGGCTTCTCCTGGTACATGAGCTACGAGTCAGTGGCGGAGACCTTC
GCCGACCAGGGCAAGCTCCTGCTCATGGTGTCCCCGCTCGCGCTGCTCCTCGCGGTGCGGCTGCTGTCGGGAGGCGACGG
CGACGGGCGGCGCGTCGACCAGCTGATGTCCATGTCGATGCCGGAGAGGGACTCCATCCACCGCGCCGGGGGGTCGCCGT
GGGGCGTCGGGCTCCTGCTCGTGCTGCTCATCGTCATGGTCTCCTACCAGTCCAACTTCCGGGAGAGGTGGTTCGCACTC
TAGTGTCATAGTCACCGGATGATGACT--GATTTCCATCGGAACCGAGATCGGGACATTGAGCAAATGAGCATG---TAC
CTGTGTAACCCGAAACATGTGCATGGCTACGCGCAAGCACCCGTGTAACCCGAACTAAGGCCATTTCTAACACATCCCAA
TAAGCAAAGGAGGATACGGTGGAATAAAG------AACGCATTTGGTTGCATGTATACCAGG--------CCCGCGTGGA
AAAAACCTAGGTTCACGGTCAGGTCAGCATGGCACGGAATTTAAAGTGCCTCTGGGCATGGCTAGCTGGGCACGCAAAGA
TCGGCATTTGCTTACTAGCCAGGCTGGGCTGAGCCACAGCTAGCGCCAGCTATGTACCTGCTTCTTCTTCCACCTCCACT
AACCTCCTTCCTAATCTCCTTTTTCCCTTCTTCCTTCTAATCTATACAACGGTAAAAGATGCACATCGATATTGCGGTTT
CATTTTTGCGATCGGTTCGTAGTTTCGTTAACCGTAAATGCACAATTTTGTGTTCATGTTCGAAGCTATTTTGAACGAAT
TTTGTCAAATTTGTCGCTTACGGTCGACCGTTTGAAATTTTCTTTGACCGGCAGCTTCATCACACAATTCCACATGACAT
TTGTGTTGTAAGTCTTCTGTTTCGACGATCCTACCGCACTTACGCCGAAGTAGGTGTGCACTATATTTTTTTCTCCTTTA
TCCTCTCTCGTCTGCATCCTACTACATTGTAATTGTTTTCGGCGTCGGTCATCTTGGCCTCCTCTATCTCGCCGTACTGC
ACTGTCGCTGACATGGCGCGAGCACTGCATTTCTCCTCCTCTGTCCACTGTCTCTGTGCGGACTTTCTTTGCGAGGACGA
GGCTAGCAACTAGTTCGCTGCGCCGCCGACGGGGTTGCTCGCACACGACTCCGTGCATGTCGTGTCGAACGCGGCACCAC
CACAGCAATCAC--------CATGGTCCGACACACACTGCATTTCTCCTCCCCCATCCTCTGCCCCAGCG
>chr5D_1
CGTTATTCTACGTCATGAATGAGTCTTGGCCTGTTCTATCTGCGTGGGCTTAATTTTCTCCGAGAAGATGGCCCGTTGTC
CTGCCGGTTCCTCTGATTTTCATCTCCTTGAAACGAATCCCCTCCAGAAAAAATTCTCCTTGAAACGAATCAGCAGTGCA
GGCGTGCAGTACCACCCCTCAAAAAACAAAGGTAAATGTTTGGGAACGGCGCACCGGCCGAGTTTGGGCTGGTCGTTCGC
TGCGTCGCCACGCGTCATCACTGGCGCGTGCTACCTCCTCCGCGTCCGCACGTTTTCTTTGTGTGGCCCACGTCTGTCCC
TCCCCCTTCTTTTTCTCCTTCCTTCCTTATCCTCTTCCTCCCGTCATTCTCCTCTCCTCATTCTCTCTCTGTTTCTCCCT
GGTCTCGTTTTTCCTCCATGGATCTCTCCTCCTGTTGACCACCGGCCCCCGTTGCTACTAGGAACCGGACATGGCCGTGC
ACCCATCCCCTACCCCTCATCCACTATTGCTTTGTAATTCGATGAGAGAAGCCCTGTCCCTTTTTCCCCCAAAACAGCCC
CTAAATTTGTGACGGCGAGGGGAAGAACACGAGCGAGGTGCTGCTGTGGAGCTGGGGGTGCTTCTTCCACCTCCTCTACG
ACTGCGGCTGGGCGGAGCTGGGACTAGCAGCGCCAGAAGCCGCAACCTCGTCGTGGGGAGCTGCAACCTCCTGTCGACGG
AGCATCAGGCCTCGCCGGCAACCACGATCACCATCGATTTTTGCTACAACCGGTGTCAAAATTTGCCACAACCGGTGTCA
AAATTTGCGACGGCCACTGAGCAGCGAGCTGCAACGTCGAAGCTCACGGCCGCGGGATGCTGGGACTGCTAGCACCAGAA
GCTGCAACCGGCAACGCCGGGAGCTACAACCTCCTGTCGGCGGAGCATCAGGGCTCGCCGGCCACCACGGTCATCATCGG
TTTTTGCTACAACCGGTGTCAAAATTTGCTACAACCGTTGTCGATTTTGCTACAGCCGGTGTATTTACATTTTTGCCACA
TTGCACAAGCCAGCGTCTGGATTTTTTGCTACAACCGTTGTTCGATTTTGCTGGAACGGGCGCTCGTTTTTGCTGGAACG
GGTGACCGAGATGTTACAACGGTGAGATGTGATCGACGAGCTGCGGCATCAGGCATGAGCGGCGACGAGCACGGCGGTGA
GCTATGGCCCTTGCCATCGGAGCTACAATCGTCGCCACCAGAGCTACAACCACGGGTGCCGATGTTACATGCGTGGAGCT
GGCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNAGTTGGTCGCGCTCGCTCATCCATGGCAGCGGCGCCCACTGCTCCTTTTTTCCGCTGTGCTCGCGAGATTCGTTTT
TCTTTTTTAAGAAAGGGACTGCACGAGAGCCCAGTCTTCGAATTGAACGGTTGGGGCTCGACCGGCCCAAACAATTCGGC
CGGTGCGCCGGCGCCTATAAGCGCCCAAAAACAAAAACAAATAAAAAAGCAGCGCAACAGCACTCGCAAGCATCCGTTCA
GTCGATCAGATCATGTCCGAAACATAAGTGGAAAAAAGAGATGCGACGAGAGATAACATGC----CACACGTGACCAACA
CGT----------ACAGTGGTCGATCCGTACGTACGTGTTGCCCGTAGTAATAAAAAAT----AAATACTATAGCTCTGC
AGTGGACTGTCCTAGATCTTGTTATCTTTCGCCATGGCCAGTGATATGATACACAGGAACACGACTGCTAGAAGACATAC
CTGCTGTGTTGCATCCACTTAAGATGGGCTTTCTTAACCACTTAACGACGCGGACGCCGCAGATCTTGCTCGAGCCGGAG
GGGACACCGGCTCAGATAACAAATGTGCAGATCCCGTCGAC---GCTGCACCGGCCAGCTCACCGTCCGCCCC-ACGACG
CACGCTCCCCCCACTGCGCCCACCGTCACCGACCGGTGGCCCCCGTGCTGCACGGGCGCGCTTTACTTAGCCCCGACGCG
CCGGGGATCGGGCTAAGCAAAGCGCTCGCGTCGCGGAGCCCA--------CGTGCGTGCGTGCCGACATGCCGTGTCAGC
CGCTCCACGGCCGGCCGGTCCGCCGGAACGTGCTCCTTGCTGGGGCGGCTGCTCCGATTGGCCAGCCCGCTCGCCACGTG
TCGCCCCGGGTTCGTGTATAAATAAGCGCCCGCTCGATCGTCCACTCCCCAGCTCTCTCCATCGTTAGCGACCATCGAAT
C--------------TCTGAAAAACCACCTG-AAAATCATCACCTCGGTTCCATCGATCAAGAAGCCGTAGTACGTGAGG
CCAGTGACCTATGGGGAACTCGTACAGCAACGGCGGCTCGTCGTCGGGCCACCTGCAGGCGCCGGAGCTGCCGCTGCACC
TCTGCTTCTTCCTCCTCGTGCTGTTCGTCTTCCTCGGCTTCTCCTGGTACATGAGCTACGAGTCGGTGGCGGAGACCTTC
GCCGACCAGGGCAAGCTCCTGCTCATGGTGTCCCCGCTCGCGCTGCTCCTCGCGGTGCGGCTGCTGTCGGGAGGCGACGG
CGACGGGCGGCGCGTCGACCAGCTGATGTCCATGTCGATGCCGGAGAGGGACTCCATCCACCGCGCCGGGGGGTCGCCGT
GGGGCGTCGGGCTCCTGCTCGTGCTGCTCATCGTCATGGTCTCCTACCAGTCCAACTTCCGGGAGAGGTGGTTCGCACTC
TAGTGTCATAGTCACCGGGTGATGACT--GATTTCCATCGGAACCGAGATCGGGAGATTGAGCAAATGAGCATTTACTAC
CTGTGTAACCCGAAATATGTACATGGCTACGCGCAAGCACCCGTGTAACCCGAGCTAAGGCCATTTCTAACACATCCCAA
TAAACAGAGGAGGATACGGTGGAATAAACCCTTATAACGCATTTGGTTGCATGCATAAGGTCCAACTAGACCCGCGTGAA
AAAAAACTAAGTTCATTGTCAGGTTAGCGTCGCACGGAACTTAAAGCGCCTCTGGGCATGACTCGCTCCGCATGTTCAGT
TCGGCAGTTGCTTACAGCC----------------------AGCTCCATCTCTGTACCTGCTTCTTCTTCCACCTCCACT
AACCTCCTTCCTAATATCCTTTCTTCCTTCTCCCTTCTAATTTATACAACGATAAAAGATGCACATCGATGTTACGGTTT
CATTTTTGCGATCGGTTCGTAGTTCCGTCGACCGTAAAT-CACAATTTTGTGTTCATGTTCGAAGCTATTTTGGACGGAT
TTTGTCAAATTCGTCGCGTACGGTCGACCGTTTGAAATTTTGTTTGACCGGCAGCTTCATCACACAATTCCACACGACAT
TCATGTTGTAAGTTTTCTGTTTCGACGATCCTACGCACTGACGCCGCAAGTACGCGCACACTGTATTTCT-TCTCCTCTA
TCCTCTGTCGCCTGCATCCTACTACACTGTAGTCGTTTTCGGCATCGGTCATCTTGGCCTCCTCTATCTCGTTGTACTGC
ACTGCCGCTGCCATGACGCGAGCACTGCATTTCTCCTCCTCTGTCCACTGTCTCCGTGCGGACTTTCTCTGCGAGGCCGA
GGCTAGCAACTAGTTCGTTGAGCCGTCGACGGGGTCGCTCGCGCACGACTCCGTGCATGTCGTGTCGGACGCGGCGCGAG
ACCACCGTCCACTGCATCGACATGGTCCGACACGCACTGCATTTCTCCTCCCCCATCCTCCGCCCCAGCG
>chr5A_1
CGTTATTCTTCGTCATGAATGAGTCTTGGCCTGCTCTATCTGCGTGGGCTGAGTTTACTCTGAGAAGATG----------
---CCGGTTCCTCTGATTTTCATCTCCTTGAAACGAATCCCCTCCCAAAAAAAATCTCCCTGAAACGAATCAGCAGTTAT
GCACCATCCCTC--------------------------------------------------------------------
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---------------------------------------AAAAAAAAAACAATGCAGCAGCACTCGCAAGCATAGCTTCA
GTCGATCAGATCATGTCCGAAACACAAGTGCAAAAAAGGGATGCGACGAGAGATAACTTGCATGCCACACGTGAGCATCA
CGCAGGGACCAGGACAGTGGTCGATCCGTACGTACGTGTTGCCCGTATAGTAATACCAAATACAAATACTATAGCGCTGC
AGTGGACTGTCCTAGATCTTGTTATCTTTCGCCATGGCCAGTGATATCATACACACGAACACGA---CTAGAAGACACAC
CTGCCGTGTTGCATCCACTTAAGATGGGCTTTCTTAACCACC-AACGACGCGGACGCCGCAGATCTCGCCAGAGCCGAAG
GGGACACCGGCTCAGATAACAAATGTGCAGATCCCGTCGACGCTGCTGCACCGGCCAGCGCACCCTCCGCCCCCACGGCG
CACGCTCCCCCCACTGCGCCCACCGTCACCGACCGGTGGCCCCCGCGCTGCACGGGCGCGCTTTACTTAGCCCCGACGCG
CCGGGGATCGGGCTAAGCAAAGCGCTCGCGCCGCGGAGCCCACGTGCGTGCGTGCGTGCGTGCCGACATGCCGTGTCAGC
CGCCCCACGGCCGGCCGGCCCGCCGGAACGTGCTCCGCGCCGGGGCGGCCGCTCCGATTGGCCGGCGCGCTCGCCACGTG
TCGCCCCGGGCTCGTGTATAAATAAGCGCCCGCTCGATCGTCCACTCCCCAACTCTCTCCATCGGTGGCGACCGTCGAAT
C--------------CCTGAAAAACCACCTGCAAAATCATCACCTCGGTTCCATCGATCAAGAAGCCGTGGTAGGCGAGG
CCAGTGACCTATGGGGAACGCGTACGGCAACGGCGGCTCGTCGACGGGCCACCTGCGGGCGCCGGAGCTGCCGCTGCACC
TGTGCTTCTTCCTGCTCGTGCTGTTCGTCTTCCTCGGCTTCTCCTGGTACATGAGCTACGAGTCGGTGGCGGAGACCTTC
GCCGACCAGGGCAAGCTCCTGCTCATGGTGTCGCCGCTCGCGCTGCTCCTCGCGGTGCGGCTGCTGTCGGGCGGCGACGG
CGACGGGCGGCGCGTCGACCAGCTGATGTCCATGTCGATGCCGGAGAGGGACTCCATCCACCGCGCCGGGGGGTCGCCGT
GGGGCGTCGGGCTCCTGCTCGTGCTGCTCATCGTCATGGTCTCCTACCAATCCAACTTCCGGGAGAAGTGGTTCGCGCTC
TAGTCATCGGGTGACGATTGATGGATATCGATCTCCATCGGAACCGGGATCGGGA-------------------------
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>SNPs
-------------------------------------S-----------------S---------------------S--
--------------S------------S---------------S----------S------------------S------
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------------------------------------------------------S-----------------S-------
---------------------S----------------------------------------------------------
--------S---------------------------------------------S-------------------------
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-----------S---------------------------------------S--S-------------S------SS---
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--------------------S----------S-----------S------------------------------------
-------------------------------------------------------------------------S------
-------S------------------------------------------------------------------------
---------------S--------------------S----------S-----------------S-SSSS---SS-SS-
-SSSSSSSSSSSSSS---S-------------S-S------S----S----S----------------------------
------------------------------------------------S-------------------------------
-------------S--------------------------------------------------S---------------
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------------------S------------------------------------S-----------------S------
---------------S----S--------------------------------S--------------------------
---S--S---------------------S------------------------S---SSSSS----------------S-
-----S---S-----SS-------S---S-S--------S------S-------------S--S---SS---S-SSS--S
------S--------SSS-SSSSSSSSSSSSSSSSSSSSSS---S---S--S----------------------------
---------------S------S-S------S---------S---------S------------------S--S------
------------------------S---SS---------S---------------------------------S---S--
-----------S-----S-----------------------S--------------------------------S-----
-SS----------S--------------------SSSSSSSSSS-SS-----S-S-SS----S-----S-S------S--
------S---S---------------S----S-S---------S---------------------------SS-------
----S-----S----S--------------------------------------S-------------S-------S---
-----------------S--S----S---------S------S------------------------S-------S-S-S
SS--S-SSS------------------------S--------------------------S---------
>forward_2572
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------------------------------------------------------------------------CAAAGCTT
CCGCCTCTCTCA--------------------------------------------------------------------
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>reverse_4008
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-------ATCACCATGGTCCGACACAC-------------------------------------------
