>input_sequence_81696
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----------------ATGGCCACCATCACCACCATGGCCTTCATGGCCACCTTTCGGGCTCCCAGAACCGTTGCGCAGC
CCCCGGCCACGCTGCCATCTCGCCCGGACGTCGTGTCGTTCGCGGCCCGGGCGATGCGCGCGCACGGCCGGCGGCTGGTG
GCCGTGGCGGGCTCGCCGTCCACGCCCCCGGAGCTGGCGCAGAAGGTGACGGAGAGCATCAAGCAGGCGGAGGAGACGTG
CGCGGGGGACCCGGAGGGCGGCGAGTGCGTGGCGGCGTGGGACGAGGTGGAGGAGCTCAGCGCGGCGGCCAGCCACGCGC
GCGACCGCAAGAAGGAGCACAGCGACCCGCTGGAGGAGTTCTGCGAGGACAACCCCGAGACCGACGAGTGCCGCACCTAC
GACAGCTAG-----------------------------------------------------------------------
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>chr4D_1_TraesCS4D01G185400
GTCATGGGAGAAACTGAGAGGGCGGTGAGAGATAGTGAGAGTGTGGTGTGAACTGGTGAG-----------GCGAGAGAG
CGCTGGGGAAGTTATGAAGCGTCCCATCGTGTCCCGTCTTCCTCAGGCGACAGCCACGCTGGATCACTAGTGCCTGGCTC
TGCGAAAAATGACCAATTCGTTCATTCCCACTTACTCTGATCTAGAAGTGCTTTGAGGTTCATGCGGGCCAAGAATTTGA
CAAATATTTTGAATATTTTTTGTGGTAAACTTTCACAAATGTTTTGAATTTTTTTA--TGGTGAACTTTGACAAATGTTT
TGTATACTTGCAAAATTTCAGCATGAAATAACATTTGTTAAAGTCGTGGCAAAAAAA--TTGATGCTCCAAAAATTCTAG
TTTTGGAAACATTTGGAAATGTTGAATTTGTTTTTTTTCCATGAATGTTATTTTCTGCTGAAATTTTACAAGCACACAAA
ATATTTGTCAAAGTTTATCAATTTTCTGATTTTCTTTTATTATTTTATCGATTTTTATTGTTCATCAGGGTGCA-TTTTG
AGCTTGGGATCAGAATAGAAATTTGCTTATCTCTTAGCCTTATCTTCAATAACTATCTATTCGTAAAAACATGGTTAGGA
ATATTGTGCTTAAATAAGAGAAGACAAGCATTTTTTT-CGATCTCTCTCTTCTCCATCTTAACATTTATCTTATGTGGTA
CTTCTAAAATATTCTTAGCATCATTTGTACCGGCCCTTAC--GTAGGTGTAGCATTTTCGGTAAGAAAATTCAGGAGAAA
AATCTTGGGTAATCCTGTAACAAACCCGTAACAACCCCGTAGGTCTAGGATTATTGAAA---------------------
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----------------ATCTTCTAGAAGGGAAATCTGCCCAGGCTGATCTGTCACAACGGGATTGGCCCCCAAAAGATAA
GGAGCAGAGAGCCACATAAAAATGGCGTACCCCAAACGGCCAGAGATCCCAACCAAAACCTTCTCTTCCACCCCGCTGCG
AACCAAGTGCGAAGCCATGGCCACCATCACCACCATGGCCTTCATGGCCACCTTTCGGGCTCCCAGAACCGTTGCGCAGC
CCCCGGCCACGCTGCCATCTCGCCCGGACGTCGTGTCGTTCGCGGCCCGGGCGATGCGCGCGCACGGCCGGCGGCTGGTG
GCCGTGGCGGGCTCGCCGTCCACGCCCCCGGAGCTGGCGCAGAAGGTGACGGAGAGCATCAAGCAGGCGGAGGAGACGTG
CGCGGGGGACCCGGAGGGCGGCGAGTGCGTGGCGGCGTGGGACGAGGTGGAGGAGCTCAGCGCGGCGGCCAGCCACGCGC
GCGACCGCAAGAAGGAGCACAGCGACCCGCTGGAGGAGTTCTGCGAGGACAACCCCGAGACCGACGAGTGCCGCACCTAC
GACAGCTAGCCGTGCGTGCCTGCTCCTGCCGTCTTCTGCCATTGCCGGCCGTCATTCGA--------------GCTTAGC
TTGCGTGGCACATTGGCATCTTGGGCGTGTTAAGTTTGGTTTGTTGCTTTATTTTGTTTGGCTTAGAATAAAGCGAGCAA
AGATTTGTTTGTAAAATTACAAGATACTACTATAATGTTTATTAGGAGTTCTGAGTGTGATATCATATTATCAAGGCAAG
ATGCGAGTGACCATGTTAATTAGTGCCCACTCAACTATATAG-CACACAAATCAGAGTGGCGCAGCGGAAGCGTGGTGGG
CCCATAACCCACAGGTCCCAGGATCGAAACCTGGCTCTGATATTATTCCTTCATTTTTGCAG--------TTTTTTCCCC
TTTGCT------TTTTTTATATGTTTTTCCCCTTTGCTTTTACTTCG---TTGCA---GCATGCTCTTTCAGAAACAATG
TAGGGTCATAT-GACGTACTGTACTCAGTAACTGGTTGTGACGTTTGGGTTTTCACATGGCAACATTATTTCAGTTCGCT
ACAAACTTACGATTATACATCAAAA-------------------------------------------------------
---------------------------------------------------GTTCTTGGGAATCCAAAGAAGCCAGCATA
AAAATACATACGGACAAAAACATCTATACCGACATTGCAGCCGAGGTTTTCAGAATGAAAGACTGAACACTAAACCGACA
AAAACATCTATACCGCCCAAGTAATTCCACGGTGTTCACCAAAGAAACCAAGATACGTGAAAAAATAAAGTGCAATCGAG
GTTTCGGTCTGAACCAACACAACATTTATTTCATCCAGGTTATTGCACGGTGTTCATCAGAGAAACCAAGATACAGGGGA
AATGACAGTAAAA-TGCTGAACCCACTGCAGCATCTATTTCGTCCAAGTAACGCACGGT-------GCTGGCACGATGCA
GTCGCCGCTTAGGACTGAGAAGAACTCATGTCCCAGAATCCAATCTCCAGCTCGAGCACACGAAGAAAAGCCTCTTCAGC
ATTCTTG------ACAACATCAGGTGGCGCATTCGCCAAGCAGCG
>chr4B_1
GTCATGGGAGAAACTGAGAGGGCGGTGAGAGATAGTGAGAGTGTGGTGTGAACTAGTGAG-----------GCAAGAGAG
CGCAAGGGAAGTTATGAAGCGTCCCATCGTGTCTCGTCTTTCTCAGGCGACAGTCATGCGGGATAGCTAGCGTCTGACTC
TCTGAAAA-TGACTGATTCGTCCATTCCCACTTAGTCTGATCTAGAAGTGCTTTGAGGTTCATACGGGCCAAGAATTTGA
CAAATATTTTGAATATTTTTTGTGGTAAACTTCCACAAATGTTTTGAATATTTTTT--TGGTGAACTTTGACAAATGCTT
TGTATACTTGCAAAATTTCAGCATGAAATAACATTTGTAAAAGTTGTGGCAAAAAAA--TTGATGCTCCAAAAATTCTAG
TTTTGGAAACATTTGGAAATGCTGA-----TTTTTTTTTCATGAATGTTATTTTCTACTGAAATTTTACAAGCACACAAA
ATATTTGTCAAAGTTTATCAATTTTTTGATTTTCTTTTATTATTTTATCAATTTTTATTGTTCATCAGGGTGAATTTTTG
AGCTTGGGATCAGAATAAAAATTTGCTTATTTCTTAGCCTTATCTTCAATAACTATCTATTCGTAAAAACATGGAAACGG
--ATTGTGCTTAAATAAGAGAAGACAAACATTTTTTTTCGATTTCTCTCTTCTCCATCTTAACATTTATCTTATGTGGCA
CTTCTAAAATATTCTTAGCATCATTTATACGGGCCCTTAC--GTAGGTGTAGCATTTTCGGTAAGAAAATTCAGGAGAAA
AATCTTGGGTAATCCTGTAACAAACCCGTAACAACCCCGTAGGTCTAGGATTATTG-AA---------------------
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----------------ATCTTCTAGAAGGGAAATCTGCCCAGGCTGATTTGTCACAACGGGATTGGTCCCCAAAAGATAA
GCAGCGGAGAGCCACATAAAAATGGCGTACCCCAAACGGCCAGAC--CACAACCAAAACCTTCTCTTCCACCCTCCTGCG
AACCAAGTGCGAAGCCATGGCCACCATCACCACCATGGCCTTCATGGCCACCTTTCCGGCTCCCAGAACCGTTGCGCAGC
CCTCGGCCACGCTGCCATCTCGCCCGGACGTCGTGTCGTTCGCGGCCCGGGCGATGCGCGCGCACGGCCGGCGGCTGGTG
GCCGTGGCGGGCTCGCCGTCCACGCCCCCGGAGCTGGCGCAGAAGGTGACAGAGAGCATCAAGCAGGCGGAGGAGACGTG
CGCGGGGGACCCGGAGGGCGGCGAGTGCGTGGCGGCGTGGGACGAGGTGGAGGAGCTCAGCGCGGCGGCCAGCCACGCGC
GCGACCGCAAGAAGGAGCACAGCGACCCGCTGGAGGAGTTCTGCGAGGACAACCCCGAGACCGACGAGTGCCGCACCTAC
GACAGCTAGCCGTGAGTAGCTGCTCCAGCCGTCTTCTGCCATTGCCGGCCGTCATCATGAGCGGTAGCTTCTGGCTTAGC
TTGCGTGGCACATTGGCATGTTGGGCGTGT-AAGTTTGGTTTGTTGCTTTATTTGGCTTGGCTTACTATAAAGCGAGCAG
AGATTTGTTTGTGAAATTACAAGA---TACTATAATGTTTATTAGGAGTTCTGA-----ATATCAAATTATCAAGGCAAG
CTGCGAGGTAGAGTGCTAATTAAGGTGCACTTCAATAGCATATCACACAAATCAGAGTGGCGCAGCGGAAGCGTGGTGGG
CCCATAACCCACAGGTCCCAGGATCGAAACCTGGCTCTGATATTTTTCCTTCA---------------------------
------------TTTTTAATCTGTTTTTCCCCTTTGCTTTTAGTTCG---TTGCAGCAGCATGCTCTTTCAGAAACTATG
TGGGTCATATT-GACGTACT-----TAGCAACTGGTTGTGACGTTTAGGTTTTCACATGGCAACATTATTTCAGTTCGCT
ACAAACCTACAATTATACATCAAAAGTTCTTTTGCGCTGTCTGTCCTATGAATTATGTAAGGTTGGTTTTCAGTAATGAA
AATCGGAAGGGGCGAGCCCTTCTTTGATCAAAAAAAAAAAATACATCAAAAGTTCTTGGGAATCCAAAGAAGCCAGCATA
AAAATACATACCGATAAAAACATCTATACCGACAGCGCAGCCGAGGTTTCCAGCCTGAAAGACTGAACACTAAACTGACA
AAAACATCTATACCATCCAAGTAATTCCACGGTGTTCACCAAAGAAACCAAGGTACGTGGAAAAATAAAGTGCAATCGAG
GTTTCGGTCTGAACCAACACAACAATTATTTCATCCAGGTTATTGCACGGTGTTCAACAGAGAAAACAAGATACAGGGGA
AATGACAGTAAAAATGCTGAACCCACTGCGGTATCTATTTCGTCCAAGTAATGCTCGGTGTTGGCAGTTGGCACGATGTA
GTCGCCGCTTAGGACTGAGAAGAACTCATGTCCCAGAATCCAATCTCCAGCTCGAGCACACCAAGAAAGGCCTCTTCAGC
TCTCTTGACAACAACAACATCATGTGGCGCATTCGCCAAGCAGCG
>chr4A_3
--CATGGGAGAAACTGAGAGGGCGGTGAGTGATAGTGAGAGGGTGGTGTGAACTAGTGAGTCGACGGTGAGGCGAGAGAG
CATAGGGGATATTATGAAGCGTCCCATCATGTCCCGTCTTCCTCAGGCGACAGCCACGCGGGATCGCTAGTGCCTGGCTC
TGCGAAAA-TGGTCGATTCGTCCATTCCCACTTAGTCTGATGTAGAAGTGCTTTGAGGTACATGCGGGCCAAGAATTTGA
CAAATATTTTGAATATTTTTTGTGGTAAACTTTCACGAATGTTTTGAATATCTTTTTGTGGTGAACTTTGACAAATGTTT
TGTATACTTGCAAAATTTCAGCATGAAATAATATTTGTGGAAGTCGTGGCAAAAAGAAGTTGATGCTCCAAAAATTCTAG
TTTTGGAAACATTTGGAAATGCTGAATTTG--TTTTTTTCATGAATGTTATTTTCTGCTGAAATTTTGCAAGCACACAAA
ATATTTGTCAAAATTTATCAATTTTTTGATTTTCTTTTATTATTTTATCGATTTT-ATTGTTCATCAAGGGGCA-TTTTG
AGCTCGGGATCAGAATAGAACTTTGCTTATCTCTTAGCCTTATCTTCAATAATTATTTATTCGTAAAAACATGATGAGAG
ATATTGTGCTTAAACAAGAGAAGACAAGCATGCCTTTTCGATTTCTCTCTTCTTCATCTTAACATTTATCTTATGTGGCA
CTTCTAAAATAGTCTTAGCA--ATTTATACAGGCCCTTACGAGTAGGTGTAGCATTTTCGGTAAGAAAATTCATGGAAAA
AATCTTGGGTAATCCTGTAACAAACCCGTAACAACACCGTAGGTCTAGGATTATTG-ATAACAGTTTTGCTAAAGCACAT
CTAAATGTGCCATAAGTATTGCACATCTAAGTCATATGTCATTGATTTTACATTAAGATTCGTGTGAATATTTTCTTTTT
CTTTTTCTTTTTTTCTTTTATGCTTGATTCACTCACTTAGATGTGCAATAACTAAAGCATATCTAGATGTGCCCTAGACA
CACCCGATTGATAAATATCTTCTAGAAAGGAAATCTGCCAAGGCTGATCTGTCACAACGGGATTGGCCCCCAAACGATAA
GGAGCAGAGAGCCACATAAAAATGGCGTAACCTAAACGGCCAGAC--CCCAACCAAAACCTTCTCTTCCACCCTACTGCG
AACCAAGTGGGAAGCCATGGCCACCATCACCACCATGGCCTTCATGGCCACCTTTCCGGCTCCCAGAACCGTTGCGCAGC
CCCCGGCCACGCTGCCATCTCGCCCGAACGTCGTGTCGTTCGCCGCCCGGGCGATGCGCGCGCACGGCCGACGGCTGGTG
GCCGTGGCTGGCTCGCCGTCCACGCCCCCGGAGCTGGCGCAGAAGGTGACGGAGAGCATCAAGCAGGCGGAGGAGACGTG
CGCGGGGGACCCGGAGGGCGGCGAGTGCGTGGCGGCGTGGGACGAGGTGGAGGAGCTCAGCACGGCGGCCAGCCACGCGC
GCGACCGCAAGAAGGAGCACAGCGACCCGCTGGAGGAGTTCTGCGAGGACAACCCCGAGACCGACGAGTGCCGCACCTAC
GACAGCTAGCCGTGCGTAGCTGCTCGTGCCGGCTTCTGCCATTGCCGGACGTCATCATGAGCGGTAGCTTCTGGCTTAGC
TTGCGCGGCACATTGGCATCTTGGGCGTGT-AAGTTTGGTTTGTTGCTTTATTTGGCTTAGCTTACAATAAAGCAAGCAG
AGATTTGTTTGTAAAATTATAAGA---TACTATAATGTTTATTAGGAGTTCTGAGTGTGATATCAAATTATCAAGGCAAG
CTGCGAGGTATCATGCTAATCAAGTAAGACTTCAATTACATCATACACAAATCAGAGTGGCGCAGCGGAAGCCTGGTGGG
CCCATAACCCACAGGTCCCAGGATCGAAACCTGGCTCTGATATTTTTCCTTCATTTTTGCAGATTTTTTCTTTTTTCCCG
TTTGCTTTTTTTTTTTAAATCCGTTTTTCCCCTTTGCTTTTACTAGTTCTTTGCA---GCATGCTCTTTCAGAAACGATG
TAGGGTCATATTGACGTACTGTACTTAGCAACTGGTTGTGACATTTAGGTTTTCACATGGCAACATTATTTCAGTTCGCT
ACAAACTTACAATTATACATCAT---------------------------------------------------------
-------------------------------------------------AAGTTCTTGGGAATCCAAAGAAGCCAGCATA
AAAATACATACCAACAAAAACATCTATACCGACGGTGCAGCCGAGGTTTTCAGCCTGAAAGACTGAACACTAAACCGACA
AAAACATCTATACCGTCCAAGTAATTCCACCGTGCTGACCAAAGAAACCTAGATACGTGAAAAAATAAAGTGCAATCGAG
GTTTCGGTCTGAACCAACACAACATTTATTTCATCCAGGTTATTGCACGGTGTTCACCAGAGAAACCAAGATACAAGGGA
AATGACAGTAAAA-TGCTGAACCCACTGCGGCGTCTATTCCGTCCAAGTAATGCAGGGT-------GTTGGCACGATGTA
GTCGCCGCTTAGGACAGAGAAGAACTCATGTCCCAGAATCCAATTTCCAGCTTAAGCACCCGAAGAAAAGCCTCTTCAGC
ACTCTTG------ACAACATCAGGTGGCGCATTTGCCAAGCAGCG
>SNPs
------------------------------------------------------S-------------------------
---S-------------------------------------------------------S-----S--------------
--------S-----S------S------------S---------------------------------------------
-------------------------------------------------S-----S------------------------
--------------------------------------S-----------------------------------------
---------------------S----------------S-----------------------------------------
-------------------------S------------------------------------------------------
---------------------------------------------------------------------------S---S
------------------------------------------S-----------------------------------S-
--------------------------S---S-------------------------------------------------
--------------------------------------------------------S-----------------------
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--------------------------------------------SSS--------------------------SS-----
--------------------------------------------------------S-----------------------
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-----------------SS------------------------------------SSSS---------------------
------------------------------S-----------------------S-S--------S-------------S
------------------------SSS--------------------------------------S--------------
S------SS-S----S------SS-SS----SS-S--SSSSS--------------------------------------
--------------------------------------------S----------------------------------S
-----------------S--S-------------------------------------------------------S---
-------------------------S--S-----------------S---------------------------------
----------S---------------------------------------------------------------------
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-----------S----------------------S------------------SS-------------------------
---------------S----------------------------------------------------------------
--------------------------------------------------------S-----------------------
-----------------------------S---------------------S---------------S----------S-
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-S-------------------------------------------
>forward_1195
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-------------------------------------------------------AAACCTTCTCTTCCACCCCG-----
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>reverse_2355
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----------------------------------TTGCAGCCGAGGTTTTCAGA--------------------------
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