>input_sequence_81693
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-------------------------ATGGCCACCATCACCACCATGGCCTTCATGGCCACCTTTCCGGCTCCCAGAACCG
TTGCGCAGCCCTCGGCCACGCTGCCATCTCGCCCGGACGTCGTGTCGTTCGCGGCCCGGGCGATGCGCGCGCACGGCCGG
CGGCTGGTGGCCGTGGCGGGCTCGCCGTCCACGCCCCCGGAGCTGGCGCAGAAGGTGACAGAGAGCATCAAGCAGGCGGA
GGAGACGTGCGCGGGGGACCCGGAGGGCGGCGAGTGCGTGGCGGCGTGGGACGAGGTGGAGGAGCTCAGCGCGGCGGCCA
GCCACGCGCGCGACCGCAAGAAGGAGCACAGCGACCCGCTGGAGGAGTTCTGCGAGGACAACCCCGAGACCGACGAGTGC
CGCACCTACGACAGCTAG--------------------------------------------------------------
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-----------------------------------
>chr4B_1_TraesCS4B01G184400
TCGAGGGTTGTCATGGGAGAAACTGAGAGGGCGGTGAGAGATAGTGAGAGTGTGGTGTGAACTAGTGAG-----------
GCAAGAGAGCGCAAGGGAAGTTATGAAGCGTCCCATCGTGTCTCGTCTTTCTCAGGCGACAGTCATGCGGGATAGCTAGC
GTCTGACTCTCTG-AAAATGACTGATTCGTCCATTCCCACTTAGTCTGATCTAGAAGTGCTTTGAGGTTCATACGGGCCA
AGAATTTGACAAATATTTTGAATATTTTTTGTGGTAAACTTCCACAAATGTTTTGAATATTTTTT--TGGTGAACTTTGA
CAAATGCTTTGTATACTTGCAAAATTTCAGCATGAAATAACATTTGTAAAAGTTGTGGCAAAAAAA--TTGATGCTCCAA
AAATTCTAGTTTTGGAAACATTTGGAAATGCTGA-----TTTTTTTTTCATGAATGTTATTTTCTACTGAAATTTTACAA
GCACACAAAATATTTGTCAAAGTTTATCAATTTTTTGATTTTCTTTTATTATTTTATCAATTTTTATTGTTCATCAGGGT
GAATTTTTGAGCTTGGGATCAGAATAAAAATTTGCTTATTTCTTAGCCTTATCTTCAATAACTATCTATTCGTAAAAACA
TGGAAACGG--ATTGTGCTTAAATAAGAGAAGACAAACATTT-TTTTTCGATTTCTCTCTTCTCCATCTTAACATTTATC
TTATGTGGCACTTCTAAAATATTCTTAGCATCATTTATACGGGCCCTTAC--GTAGGTGTAGCATTTTCGGTAAGAAAAT
TCAGGAGAAAAATCTTGGGTAATCCTGTAACAAACCCGTAACAACCCCGTAGGTCTAGGATTATTG-AA-----------
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-------------------------ATCTTCTAGAAGGGAAATCTGCCCAGGCTGATTTGTCACAACGGGATTGGTCCCC
AAAAGATAAGCAGCGGAGAGCCACATAAAAATGGCGTACCCCAAACGGCCAGAC--CACAACCAAAACCTTCTCTTCCAC
CCTCCTGCGAACCAAGTGCGAAGCCATGGCCACCATCACCACCATGGCCTTCATGGCCACCTTTCCGGCTCCCAGAACCG
TTGCGCAGCCCTCGGCCACGCTGCCATCTCGCCCGGACGTCGTGTCGTTCGCGGCCCGGGCGATGCGCGCGCACGGCCGG
CGGCTGGTGGCCGTGGCGGGCTCGCCGTCCACGCCCCCGGAGCTGGCGCAGAAGGTGACAGAGAGCATCAAGCAGGCGGA
GGAGACGTGCGCGGGGGACCCGGAGGGCGGCGAGTGCGTGGCGGCGTGGGACGAGGTGGAGGAGCTCAGCGCGGCGGCCA
GCCACGCGCGCGACCGCAAGAAGGAGCACAGCGACCCGCTGGAGGAGTTCTGCGAGGACAACCCCGAGACCGACGAGTGC
CGCACCTACGACAGCTAGCCGTGAGTAGCTGCTCCAGCCGTCTTCTGCCATTGCCGGCCGTCATCATGAGCGGTAGCTTC
TGGCTTAGCTTGCGTGGCACATTGGCATGTTGGGCGTGT-AAGTTTGGTTTGTTGCTTTATTTGGCTTGGCTTACTATAA
AGCGAGCAGAGATTTGTTTGTGAAATTACAAGA---TACTATAATGTTTATTAGGAGTTCTGA-----ATATCAAATTAT
CAAGGCAAGCTGCGAGGTAGAGTGCTAATTAAGGTGCACTTCAATAGCATATCACACAAATCAGAGTGGCGCAGCGGAAG
CGTGGTGGGCCCATAACCCACAGGTCCCAGGATCGAAACCTGGCTCTGATATTTTTCCTTCA------------------
---------------------TTTTTAATCTGTTTTTCCCCTTTGCTTTTAGTTCG---TTGCAGCAGCATGCTCTTTCA
GAAACTATGTGGGTCATATT-GACGTACT-----TAGCAACTGGTTGTGACGTTTAGGTTTTCACATGGCAACATTATTT
CAGTTCGCTACAAACCTACAATTATACATCAAAAGTTCTTTTGCGCTGTCTGTCCTATGAATTATGTAAGGTTGGTTTTC
AGTAATGAAAATCGGAAGGGGCGAGCCCTTCTTTGATCAAAAAAAAAAAATACATCAAAAGTTCTTGGGAATCCAAAGAA
GCCAGCATAAAAATACATACCGATAAAAACATCTATACCGACAGCGCAGCCGAGGTTTCCAGCCTGAAAGACTGAACACT
AAACTGACAAAAACATCTATACCATCCAAGTAATTCCACGGTGTTCACCAAAGAAACCAAGGTACGTGGAAAAATAAAGT
GCAATCGAGGTTTCGGTCTGAACCAACACAACAATTATTTCATCCAGGTTATTGCACGGTGTTCAACAGAGAAAACAAGA
TACAGGGGAAATGACAGTAAAAATGCTGAACCCACTGCGGTATCTATTTCGTCCAAGTAATGCTCGGTGTTGGCAGTTGG
CACGATGTAGTCGCCGCTTAGGACTGAGAAGAACT
>chr4D_1
TCGAGGGTTGTCATGGGAGAAACTGAGAGGGCGGTGAGAGATAGTGAGAGTGTGGTGTGAACTGGTGAG-----------
GCGAGAGAGCGCTGGGGAAGTTATGAAGCGTCCCATCGTGTCCCGTCTTCCTCAGGCGACAGCCACGCTGGATCACTAGT
GCCTGGCTCTGCGAAAAATGACCAATTCGTTCATTCCCACTTACTCTGATCTAGAAGTGCTTTGAGGTTCATGCGGGCCA
AGAATTTGACAAATATTTTGAATATTTTTTGTGGTAAACTTTCACAAATGTTTTGAATTTTTTTA--TGGTGAACTTTGA
CAAATGTTTTGTATACTTGCAAAATTTCAGCATGAAATAACATTTGTTAAAGTCGTGGCAAAAAAA--TTGATGCTCCAA
AAATTCTAGTTTTGGAAACATTTGGAAATGTTGAATTTGTTTTTTTTCCATGAATGTTATTTTCTGCTGAAATTTTACAA
GCACACAAAATATTTGTCAAAGTTTATCAATTTTCTGATTTTCTTTTATTATTTTATCGATTTTTATTGTTCATCAGGGT
GCA-TTTTGAGCTTGGGATCAGAATAGAAATTTGCTTATCTCTTAGCCTTATCTTCAATAACTATCTATTCGTAAAAACA
TGGTTAGGAATATTGTGCTTAAATAAGAGAAGACAAGCATTT-TTTT-CGATCTCTCTCTTCTCCATCTTAACATTTATC
TTATGTGGTACTTCTAAAATATTCTTAGCATCATTTGTACCGGCCCTTAC--GTAGGTGTAGCATTTTCGGTAAGAAAAT
TCAGGAGAAAAATCTTGGGTAATCCTGTAACAAACCCGTAACAACCCCGTAGGTCTAGGATTATTGAAA-----------
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-------------------------ATCTTCTAGAAGGGAAATCTGCCCAGGCTGATCTGTCACAACGGGATTGGCCCCC
AAAAGATAAGGAGCAGAGAGCCACATAAAAATGGCGTACCCCAAACGGCCAGAGATCCCAACCAAAACCTTCTCTTCCAC
CCCGCTGCGAACCAAGTGCGAAGCCATGGCCACCATCACCACCATGGCCTTCATGGCCACCTTTCGGGCTCCCAGAACCG
TTGCGCAGCCCCCGGCCACGCTGCCATCTCGCCCGGACGTCGTGTCGTTCGCGGCCCGGGCGATGCGCGCGCACGGCCGG
CGGCTGGTGGCCGTGGCGGGCTCGCCGTCCACGCCCCCGGAGCTGGCGCAGAAGGTGACGGAGAGCATCAAGCAGGCGGA
GGAGACGTGCGCGGGGGACCCGGAGGGCGGCGAGTGCGTGGCGGCGTGGGACGAGGTGGAGGAGCTCAGCGCGGCGGCCA
GCCACGCGCGCGACCGCAAGAAGGAGCACAGCGACCCGCTGGAGGAGTTCTGCGAGGACAACCCCGAGACCGACGAGTGC
CGCACCTACGACAGCTAGCCGTGCGTGCCTGCTCCTGCCGTCTTCTGCCATTGCCGGCCGTCATTCGA------------
--GCTTAGCTTGCGTGGCACATTGGCATCTTGGGCGTGTTAAGTTTGGTTTGTTGCTTTATTTTGTTTGGCTTAGAATAA
AGCGAGCAAAGATTTGTTTGTAAAATTACAAGATACTACTATAATGTTTATTAGGAGTTCTGAGTGTGATATCATATTAT
CAAGGCAAGATGCGAGTGACCATGTTAATTAGTGCCCACTCAACTATATAG-CACACAAATCAGAGTGGCGCAGCGGAAG
CGTGGTGGGCCCATAACCCACAGGTCCCAGGATCGAAACCTGGCTCTGATATTATTCCTTCATTTTTGCAG--------T
TTTTTCCCCTTTGCT------TTTTTTATATGTTTTTCCCCTTTGCTTTTACTTCG---TTGCA---GCATGCTCTTTCA
GAAACAATGTAGGGTCATAT-GACGTACTGTACTCAGTAACTGGTTGTGACGTTTGGGTTTTCACATGGCAACATTATTT
CAGTTCGCTACAAACTTACGATTATACATCAAAA----------------------------------------------
------------------------------------------------------------GTTCTTGGGAATCCAAAGAA
GCCAGCATAAAAATACATACGGACAAAAACATCTATACCGACATTGCAGCCGAGGTTTTCAGAATGAAAGACTGAACACT
AAACCGACAAAAACATCTATACCGCCCAAGTAATTCCACGGTGTTCACCAAAGAAACCAAGATACGTGAAAAAATAAAGT
GCAATCGAGGTTTCGGTCTGAACCAACACAACATTTATTTCATCCAGGTTATTGCACGGTGTTCATCAGAGAAACCAAGA
TACAGGGGAAATGACAGTAAAA-TGCTGAACCCACTGCAGCATCTATTTCGTCCAAGTAACGCACGGTGC-------TGG
CACGATGCAGTCGCCGCTTAGGACTGAGAAGAACT
>chr4A_1
TCGAGGGTTGGCATGGGAGAAACTGAGAGGGCGGTGAGTGATAGTGAGAGGGTGGTGTGAACTAGTGAGTCGACGGTGAG
GCGAGAGAGCATAGGGGATATTATGAAGCGTCCCATCATGTCCCGTCTTCCTCAGGCGACAGCCACGCGGGATCGCTAGT
GCCTGGCTCTGCGAAAATGGTC-GATTCGTCCATTCCCACTTAGTCTGATGTAGAAGTGCTTTGAGGTACATGCGGGCCA
AGAATTTGACAAATATTTTGAATATTTTTTGTGGTAAACTTTCACGAATGTTTTGAATATCTTTTTGTGGTGAACTTTGA
CAAATGTTTTGTATACTTGCAAAATTTCAGCATGAAATAATATTTGTGGAAGTCGTGGCAAAAAGAAGTTGATGCTCCAA
AAATTCTAGTTTTGGAAACATTTGGAAATGCTGAATTTG--TTTTTTTCATGAATGTTATTTTCTGCTGAAATTTTGCAA
GCACACAAAATATTTGTCAAAATTTATCAATTTTTTGATTTTCTTTTATTATTTTATCGATTTT-ATTGTTCATCAAGGG
GCA-TTTTGAGCTCGGGATCAGAATAGAACTTTGCTTATCTCTTAGCCTTATCTTCAATAATTATTTATTCGTAAAAACA
TGATGAGAGATATTGTGCTTAAACAAGAGAAGACAAGCATGCCTTTT-CGATTTCTCTCTTCTTCATCTTAACATTTATC
TTATGTGGCACTTCTAAAATAGTCTTAGCA--ATTTATACAGGCCCTTACGAGTAGGTGTAGCATTTTCGGTAAGAAAAT
TCATGGAAAAAATCTTGGGTAATCCTGTAACAAACCCGTAACAACACCGTAGGTCTAGGATTATTGATAACAGTTTTGCT
AAAGCACATCTAAATGTGCCATAAGTATTGCACATCTAAGTCATATGTCATTGATTTTACATTAAGATTCGTGTGAATAT
TTTCTTTTTCTTTTTCTTTTTTTCTTTTATGCTTGATTCACTCACTTAGATGTGCAATAACTAAAGCATATCTAGATGTG
CCCTAGACACACCCGATTGATAAATATCTTCTAGAAAGGAAATCTGCCAAGGCTGATCTGTCACAACGGGATTGGCCCCC
AAACGATAAGGAGCAGAGAGCCACATAAAAATGGCGTAACCTAAACGGCCAGAC--CCCAACCAAAACCTTCTCTTCCAC
CCTACTGCGAACCAAGTGGGAAGCCATGGCCACCATCACCACCATGGCCTTCATGGCCACCTTTCCGGCTCCCAGAACCG
TTGCGCAGCCCCCGGCCACGCTGCCATCTCGCCCGAACGTCGTGTCGTTCGCCGCCCGGGCGATGCGCGCGCACGGCCGA
CGGCTGGTGGCCGTGGCTGGCTCGCCGTCCACGCCCCCGGAGCTGGCGCAGAAGGTGACGGAGAGCATCAAGCAGGCGGA
GGAGACGTGCGCGGGGGACCCGGAGGGCGGCGAGTGCGTGGCGGCGTGGGACGAGGTGGAGGAGCTCAGCACGGCGGCCA
GCCACGCGCGCGACCGCAAGAAGGAGCACAGCGACCCGCTGGAGGAGTTCTGCGAGGACAACCCCGAGACCGACGAGTGC
CGCACCTACGACAGCTAGCCGTGCGTAGCTGCTCGTGCCGGCTTCTGCCATTGCCGGACGTCATCATGAGCGGTAGCTTC
TGGCTTAGCTTGCGCGGCACATTGGCATCTTGGGCGTGT-AAGTTTGGTTTGTTGCTTTATTTGGCTTAGCTTACAATAA
AGCAAGCAGAGATTTGTTTGTAAAATTATAAGA---TACTATAATGTTTATTAGGAGTTCTGAGTGTGATATCAAATTAT
CAAGGCAAGCTGCGAGGTATCATGCTAATCAAGTAAGACTTCAATTACATCATACACAAATCAGAGTGGCGCAGCGGAAG
CCTGGTGGGCCCATAACCCACAGGTCCCAGGATCGAAACCTGGCTCTGATATTTTTCCTTCATTTTTGCAGATTTTTTCT
TTTTTCCCGTTTGCTTTTTTTTTTTAAATCCGTTTTTCCCCTTTGCTTTTACTAGTTCTTTGCA---GCATGCTCTTTCA
GAAACGATGTAGGGTCATATTGACGTACTGTACTTAGCAACTGGTTGTGACATTTAGGTTTTCACATGGCAACATTATTT
CAGTTCGCTACAAACTTACAATTATACATCAT------------------------------------------------
----------------------------------------------------------AAGTTCTTGGGAATCCAAAGAA
GCCAGCATAAAAATACATACCAACAAAAACATCTATACCGACGGTGCAGCCGAGGTTTTCAGCCTGAAAGACTGAACACT
AAACCGACAAAAACATCTATACCGTCCAAGTAATTCCACCGTGCTGACCAAAGAAACCTAGATACGTGAAAAAATAAAGT
GCAATCGAGGTTTCGGTCTGAACCAACACAACATTTATTTCATCCAGGTTATTGCACGGTGTTCACCAGAGAAACCAAGA
TACAAGGGAAATGACAGTAAAA-TGCTGAACCCACTGCGGCGTCTATTCCGTCCAAGTAATGCAGGGT-------GTTGG
CACGATGTAGTCGCCGCTTAGGACAGAGAAGAACT
>SNPs
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--S----------S----------------------------S------S------------S--S-------S-----S
-S---S----SS----------S-------------------------------------------------S-------
-----------------------------------------S--------------------------------------
------S----------------------------------------S-----S--------------------------
-----------------------------------------------------------------S--------------
----------------------------------------------------------S---------------------
-S-S----------------------S------------S----------------------------------------
---SS-S-----------------------------S----------S--------------------------------
----------------------------------------S---------------------------------------
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---------------------------------------------------------S-----------------S----
----------S---S------------------------------------------S----------------------
---S----------------------------------------------------------------------------
-----------S--------------------------------------------------------------------
-----------------------------------------------------------S--------------------
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-----------------------S-----------S--------------------------------------------
----------------------------S----------------------------------------------S----
---------------------S----------------------------------------------------------
-------------------SSS------------SS----------S---SS----------------------------
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---------------------------------------------------S------------SSS-------------
-----S----S--SSSSSS-------------------------------------------------------------
---------------S------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------
-----------------------S--------------------S-------------S---------------------
----S------------------S-------------------------------------S------S-----------
---------------------------------S-------------------------------S--------S-----
----------------------S-----------------S----------------------S-----SSSSSS-----
-----------------------------------
>forward_160
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------------------------------------------------------------AGTCATGCGGGATAGCTAGC
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>reverse_2197
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------------------------------------TCTTTTGCGCTGTCTGTCCT------------------------
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