>input_sequence_81690
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-------------------------ATGGAGGGCGGAGAAGGTTCTGGTGGTGGCGGCGAGCCGACCAAGTACCGCGGGG
TGCGGCGCCGGCCATGGGGCAAGTTCGCGGCGGAGATCCGGGACTCGAGCCGGCACGGCGTGCGCATGTGGCTCGGCACC
TTCGACACCGCCGAGGAGGCCGCGGCCGCCTACGACCGCTCGGCCTACTCCATGCGCGGCCGCAACGCCGTGCTCAACTT
CCCCGACCGGGCGCACATCTACGAGGCCGAGGCCAGGGGCCAGGGCCAGGGTTCCTCATCGTCGTCCAGGCAGCAGAAC-
--CAGCAGCAGCAGGGGCAGAGCGGGGTGATCGAGTTCGAGTACCTGGACGACGACGTGCTGCAGTCCATGCTCCACGAC
CACGACAAGGGCAACAAGTAG-----------------------------------------------------------
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>chr4B_1_TraesCS4B01G001900
ATATAGTCCAAGGGGTACAAGCCATCGCTGCGAACACCAACTAGAAGAGGCGACAAGCATGCGTTAAACTAGCATGGAAA
GTTTTGAAGAGCCGCGTGCATATGTTATTGTGTTGATCATATGTGTAGAATAACTTGTTAACCAATGATTCAGCTTTATA
TTGATTAAGT-AAAAACAGTACAACATATCATAGCAGGAAAAAAA-----------ACCCAACAAAGAACAAAGAACATT
AAAAAAAACCTAGAAAATCACACCAAGGAATGTCGTTGTCACAATGCTTTACAATACCTTGTAGTATAATAATTTACAGC
CCCACATTTACGGCAACCCGCATCAATTTAAAACCCACCACGTTTTCCAGAAAACTAGAGGGGATTATACAGAA------
TTTTACAGG---CATGTATTA---CGTACGTATGTGTCCTTTGAGG----TGCATGCATGTAACTGAATAAGTGTTGTGT
CTACATGCTGCTACTGCCTATTTGCCTAATACTACTAGGAGTAGC--ACATCTGGAGATAATTAATAGTTACAGAAAAGG
TGTATAAAACTTTGGTGTGTATGCATGCATGTAAGCATATATATATATAGATTTGA-------------AATGCATACG-
--AGGACTAATCGACGAGGTGAACCTGCCTGCCTGGTCAGGAGCCTGAGTAGAGTAGAGTAGAGTAGAGTAGAGTAGGCA
CTCCGGACGTAGAGAGGACGTATGCCTTTACGCTACCCGGGAAGGAAGGAATGGTCGGATTCGTTGGGAATGGTTTGGAT
CCGCACGTGCCGGGCCCATCCCCAAATATTGACATATCCCTTTCCCACCCTCTCCTTTTTAAACCCTCCGACTCCCCCCC
GCCTTCTCCTTCAACCCTTCATCACCAACATCCATCCATC-CATCAGCACTTCATTCTCCCCCTTCAACTCCCTCCAACC
TCCACCATCGACCACTGATTTGCTAGCTAGCTC----------------CCCAAACCTCATTTTCCGGCTTCTTCACTTC
ATTACTAGTTTAATC--TTGAGATCATGGAGGGCGGAGAAGGTTCTGGTGGTGGCGGCGAGCCGACCAAGTACCGCGGGG
TGCGGCGCCGGCCATGGGGCAAGTTCGCGGCGGAGATCCGGGACTCGAGCCGGCACGGCGTGCGCATGTGGCTCGGCACC
TTCGACACCGCCGAGGAGGCCGCGGCCGCCTACGACCGCTCGGCCTACTCCATGCGCGGCCGCAACGCCGTGCTCAACTT
CCCCGACCGGGCGCACATCTACGAGGCCGAGGCCAGGGGCCAGGGCCAGGGTTCCTCATCGTCGTCCAGGCAGCAGAAC-
--CAGCAGCAGCAGGGGCAGAGCGGGGTGATCGAGTTCGAGTACCTGGACGACGACGTGCTGCAGTCCATGCTCCACGAC
CACGACAAGGGCAACAAGTAGTGGATCGATCATCGACCGTTCGATCGATG--------------------ATAATACCTA
CTGTATCATCCCGGCCCGGCCGGCAACACCGACCTGCGTGCATGCGCGGGCGCGGATGCAATCTACACTACCTACCTACG
CATTCCGGCCATATAT----------------TAGGTACGTAGAT-----TATATGTGTACGAGAGCCTACGAGC-----
---------TCGATGAAGATCGTAC--GTGGTGCATTCTGATGCATGAGGATTTCATCCATCGACTCGACCCTCTACCAT
ATATTTGACGGGCCGATCGATCGATTTGCAGCCAATAATAATCCAATGGTTGATGAGTTTTCAGTCTCAAATG----ACT
CAACAATCGCAATGCCTACATTTTCAGTTATTACAGTAGGTATGCTTAATTAATCGACTTGTATCATCAACATATAT---
----------CTCAACATCAACATAGACATATACTGTGAATGATCCTCGTACTTCCTGGCGAGATTTATTCAATGTT-GG
GGAATTAAATCAAATCGCCTGCTAGCTTGTTAGTCACACATGCACAC----GTACTCGATTACGGGCCCGGTCGGAGAG-
-----------GCCGGTGTACATGGAACCTACCTGGAAGCTTCTTTCCT------ATATGCATTGCA-AAGGGAAGTAGG
GCTGGCTGCTAACAGCAGCTGAAAGATG-GATGAAAGGAATCAAATATGCATGTCATCGATCGCCG------------CC
GGTCCCGGCCCCCGCCCCGGCCGAGAGAAAGTA----GGACGTACGGCTGGCTGGAGCCACAGTCTAATCTAGCTTCAAC
AGT---------------------CTCCGTCCATGAGAATTCA----GGGGCTGCGAT-------------GGATGGATG
GATGGATGGGAGCAACCGTGCATGAAGCTTCTCGGAAGACGGAACCTGC----TTTCGTTCCGGCCGTCACCACCA----
GTTCACCAACACATATGTACACAGCACACCTCTGCCGTT------CTGCTGGTACATCATC----AATTACCTGCGCGCT
GAAACCAACATGGAGAAACATGCCATGTGTAACTGCACAGACT--CAATCCCCTACTCCTACTTCAGTCTGTAC
>chr4A_116
ATT-----------------------------------------------------------------------------
--------------------------------------ATATGTGGGGAATAATTTGTTAAACAACGATGCGGCTTTA--
TTGATTAAGTAAAAAACAATACAGCATATCAGAGCGGGAAAAAACAAAACAAAAACAACCAACGCATAACAAAG------
--AAAAAAACTAGAAAATCACACCAAGCAATGCCGTTGTCACAATGCTTTACAATACCTTGTA---TAATAATTTACAAT
CCAACATTTACGGCAGCCCACATCAATTTAGAATCCACCACGTTTTCCAGAAAACTGGAGGGGGATTATATGTACATGAG
TTTTACAGG---CATGTACTA---AGTACGTATGTGTCCTTTGAGGTGCATGCATGCATGTAACTGAATAAGTGTTGTGT
CTACATAC----------TAG-TGCCAAATACTTATATGTAGCACATACATCTGGAGATTATAATTAATTATAGAAAGAA
ACTTTGGTT-----GTATGCATACATGCATGTAAGCATATACTATATTATGATATGAAGTGCAATGCATAATGCATAGG-
--AGGA-----------------------------------------------------------AGAGTAGAGTAGGCA
CTCGAGACGTAGAGTGGACGTATGCCTTTACGCTACCCGGGAAGGAA----TGGTCGGATTCGTTGGGAATGGTTTGGAT
CCGCACGTGCCGGTCCCGCCTCCAAATATTGACATATCCCTTTCCCACCCTCTGCTTTTTAAACCCTCCGACTC-CCCCC
GCCTTCTCCTCCAACCCTTCATCACCAACATCGATCG-----ATCAGCACTTCATTCTCCC---TCGT-TCCATCCAAGC
TCCACCATCCATCACTGATTTGCAC-----------TTACCTAGCTACTCCGCAACCCCCACTTCCGGCTTCTTCATTTC
TCACTACTAGTACGTAGTTGAGATTATGGAGGGCGGAGAAGGATCCGGTGGCGGCGGCGAGCCGACCAAGTACCGCGGGG
TGCGCCGCAGGCCGTGGGGCAAGTTCGCCGCGGAGATCCGGGACTCGAGCCGGCACGGCGTGCGCATGTGGCTCGGCACC
TTCGACACCGCCGAGGAGGCCGCGGCCGCCTACGACCGCTCCGCCTACTCCATGCGCGGCCGCAACGCCGTGCTCAACTT
CCCCGACCGGGCGCACGTCTACGAGGCCGAGGCCAGGCGCCAGGGCCAGGGCTCTTCGTCGTCGGCGAGGCAGCAGAATC
AGCAGCAGCAGCAGGGGCAGAGCGGGGTGATCGAGTTCGAGTACCTGGACGACGACGTGCTGCAGTCCATGCTCCACGAC
CACGACAAATCCAACAAGTAG----------ATCGATGGATCATCCATCCATCCATCCATGGATCGATCCATAATACCTA
CTGTATCATCCCGGCCCGGCCGGCAACATCGACCTGCGTGCATGCGCGGGCGCGGATGCAATCTACACTACCTACCTATG
CATTCCGGCCATATAT----------------TAGGTACGTAGAT-----TATATGTGTACGAGAGCCTACGAGC-----
---------TCGATGAAGATCGTAC--GTGGTGCATTCTGATGCATGAGGAT----TCCATCGACACGACCCTCTACCAT
ATATTTGATGGGTCGATCGAGTAATTTGCAGCCAGTAATCCAATCGATGATATGGGGTTTTCAGTCTCAAATG----AC-
--ACAATCGCAATGCCTACATTTTCAGTTACA-------GTATGCTTAATTAACCGACTTGTATCATCAACATATATATG
CATCGATCATCTCAACATCAACATATATACATACTGTAAACCATCCTCGTACTTCCTGGCGAGATTTATTCAATGTT-GG
GGCATTAAATCAAATGGCCTGCTAGCTTGTTAGTCACACATGCACATGTAGGTACTCGATTACCGGCCCGGTCGGAGAG-
-----------GT--------ATGGAACCTACCTGGAAGCTTCTTTCTTTCATTCATATGCATTGCATAAGGGAAGTAGG
GCTGGCTGCTAACAGCAGCTGAAAGATG-GATGGAAGGAATCAAATATGCATGTCATCCATCGCCGCCGGTCCCGGTCCC
GGTCCCGGCCCCCGCCCCGGCCGAGAGAAAGTA----GGACGTACGGCTGGCTGGAGCCACAGTCT----------CAAC
AGTCGACCATGCACCCAGAATGCACTCCGTCCATGAGAATTCA----GGGGCTGCGAT-------------GGAGCAACC
GTA-------------CGTGCATGAAGCTTCTCGGAAGTCGGAACCTGCCCGCTTTCATTCCGGCCGTCACCACCA----
GTAGGTACGTTCAC-------CAACACACCTCTGC---TATTCTGCTGCTGGTAGATCATCGATTAATTACCTGCGCGCT
GAAACCAACATGGAGAAACATGTCATGTGTAACTGCACTAACTCTCAATCTCCTACTCCT--------------
>chr4D_309
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CCCACATTTACGGCAACCCACATCAATTTAAAATCCACCACGTTTTCCAGAAAACTAGAGAGGGTTATACACAA------
TTTTACATTATTCATGTACTAGGACGTACGTATGTGTCCTTTGAGGTGCATGCATGCATGTAATTGAATAAGGGTTGTGT
CTTCCTAG----------TATTTGCCTAATACTACTGAAGTATTACAATTATAA------------AATTATAAAAAGAA
AAG---AAACTTTGGTGTGTATGCATGCATGTAAGCATATATA------GATTTGA-------------AATGCATACTA
GTAGGACTAATCGACGAGGTGAACCTGCCTGCCTGGTCAGGAGGAGAGGACGTAGAGAG---------------------
----------AGAGAGGACGTATGCCTTTACGCTACCCG--------------GTCGGATTCGTTTGGAATGGTTTGGAT
CCGCACGTGCCGGACCCACTCCCAAATATTGACATATCCCTTTCCCACCCT-----TTTTAAACCCTTCCCCTT-CCCCC
GCCTTCTCCTTCAACCCTTCATCACCAACATCGATCAGCATCACCACCACTTCATTCTCTCCCTTCGT-TCCCTCCAAGC
TCCACCATCGACCACTGATTTGCTAGCTAGCTAGGGTTACTTACCTACTCCCCAACCCCCACTTCCGGCTTCTTCATTTC
TCACTACTAGC----AGTTGAGATCATGGAGGGCGGAGAAGGTTCTGGT---GGCGGCGAGCCGACCAAGTACCGCGGGG
TGCGGCGCCGGCCGTGGGGCAAGTTCGCGGCGGAGATCCGGGACTCGAGCCGTCACGGCGTGCGCATGTGGCTGGGCACC
TTCGACACCGCCGAGGAGGCCGCGGCCGCCTACGACCGCTCCGCCTACTCCATGCGCGGCCGCAACGCCGTGCTCAACTT
CCCCGACCGGGCGCACGTCTACGAGGCAGAGGCCAGGCGCCAGGGCCAGGGTTCTTCATCGTCGGCGAGGCAGCAGAAT-
-----CAGCAGCAGGGGCAGAGCGGGGTGATCGAGTTCGAGTACCTGGACGACGACGTGCTGCAGTCTATGCTCCACGAC
CACGACAAATCCAACAAGTAG----------ATCGACCCACCGATGGATG--------------------ATAATACCTA
CTGTATCATCCCGGCC-----GGCAACATCAACCTGCATGCATGCGCGGGCGG---------------------------
----CCGGCCATATGCTTACTAGGTACGTACGTATGTACGTAGATTATAGTATATGTGTACGAGAGAGAGCCTGCGAGCT
CATCGACGATCGATGAAGATCGTGCGTGTGGTGCATTCTGATGCATGAGGAT----TCCATCGACTCGACCCTCTACCAT
ATATTTGATGGGTCGATCGAGTAATTTGCAACC---AATAATCCAATGGGTGATGGGTTTTCAGTCTCAAATGCATGAC-
--ACAATCGCAATGCCTGCATTTTCAGTTATTACAGTATGCTTAATTAATTAATCGACTTGTATCATCAACATACATATG
CATCATATATCTCAACATCAACA----CATATACTGTGAATGATCCTCGTACTTCCTGGCGAGATTTATTCAATGTTTGG
GGAATTAAATCAAATCGCCCGCTAGCTTGTTAGTCACACATGCACACGTAGGTACTCGATCACCGGCCCGGTCGGATGGT
GAGGCCGGTATGT--------ATGGAACCTACCTGGAAGCTTCTTTCTTG--------TGCATTGCAT-----AAGTAGG
GCTGGCTGCTAACAGCTGAAAGTTCGATCGATGAAAGGAATCAAATATGCATGTCATCGATCGCCGCCGGT---------
---------------CCCGGCCGAGAGAAAGTAGGACGGACGTACGGCTGGCTGGAGCCACAGTCTAATCTAGCTTCAAC
AGTCGAC----CACCCAGAATGCACTCCGTCCATGAGAATTCATTCAGGGGCTGCGATGGATGGATGGATCGGAGCAACC
GTA-------------CGTGCATGAAGCTTCTCGGAAGTCGGAACCTGCCTGCCTTCATTCCGGCCGTCACCACCAGTAC
GTTCACCAACACATATGTACACAGCACACCTCTGC---T------CTGCTGGTAGATCATC----AATTACCTGCGCGCT
GAAACCAACATGGAGAAACATGTCATGTGTAACTGCACTAACT--CAATCTCCTACTCCTACT-----------
>SNPs
--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------SS------S-------S---S---S-S------SS
------------------S----S-------S---S--------S------------S-----SS-S-------SSSSSS
SS------S------------------S----S------------------------------SSS------------SS
-------------------S-------------S-----------------------------S----------------
------------------S-------------------------------------------------------------
------S-SSSSSSSSSS-------------------S-SSSSS---------------S--S-S--S---S-----SSS
SS-S-S-------------------------------------SSSS---------------------------------
-------------------------------------------SSSSS-SS-SSS----SSSSSS---------------
---SS------------------------------------------SSSS-----------------------------
-------------S----S----------------------------------S--------------------S-----
--------------------------------S---SSSS--------------------------SSS---------S-
--------------------------------S-------------------S----S-SSS--------------S---
SSSSSSSSSS--SSS------------------------------------S----------------------------
-------------S------------------------------------------------------------------
-----------------------------------------S--------------------------------------
----------------S--------------------S----------------S---------S-S-----------S-
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--------SSS----------SSSSSSSSSS--------S----------------------------------------
----------------------------S-------------------------------------------------S-
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----------------------------------------------------SSSS------------------------
--------S---S-------SSS-----------S--------------S-----S-----------------------S
SS------------------------------------S-----------------------------------------
-------------------------S------------------------------------------------------
---------------------------------------------------------------S----------------
------------SSSSSSSSS--------------------------S--------------------------------
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--------------------------------------------------------------------------SSS-SS
-SSSSSSSSSSSSSSS----------------------S------------------S----------------------
-----------------------------------SSS----------------S-------------------------
----------------------S---------------SS----------S------------SSSSSSSSSSS
>forward_43
-----------------------ATCGCTGCGAACACCAACTA-------------------------------------
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>reverse_1734
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-----------------------------------------------------TCATCCATCGACTCGACCCT-------
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