>input_sequence_81687
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-------------------------------------------------ATGGCCACCATCACCACCATGGCCTTCATGG
CCACCTTTCCGGCTCCCAGAACCGTTGCGCAGCCCCCGGCCACGCTGCCATCTCGCCCGAACGTCGTGTCGTTCGCCGCC
CGGGCGATGCGCGCGCACGGCCGACGGCTGGTGGCCGTGGCTGGCTCGCCGTCCACGCCCCCGGAGCTGGCGCAGAAGGT
GACGGAGAGCATCAAGCAGGCGGAGGAGACGTGCGCGGGGGACCCGGAGGGCGGCGAGTGCGTGGCGGCGTGGGACGAGG
TGGAGGAGCTCAGCACGGCGGCCAGCCACGCGCGCGACCGCAAGAAGGAGCACAGCGACCCGCTGGAGGAGTTCTGCGAG
GACAACCCCGAGACCGACGAGTGCCGCACCTACGACAGCTAG--------------------------------------
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>chr4A_1_TraesCS4A01G120600
GTGCTTTGAGGTACATGCGGGCCAAGAATTTGACAAATATTTTGAATATTTTTTGTGGTAAACTTTCACGAATGTTTTGA
ATATCTTTTTGTGGTGAACTTTGACAAATGTTTTGTATACTTGCAAAATTTCAGCATGAAATAATATTTGTGGAAGTCGT
GGCAAAAAGAAGTTGATGCTCCAAAAATTCTAGTTTTGGAAACATTTGGAAATGCTGAATTTG--TTTTTTTCATGAATG
TTATTTTCTGCTGAAATTTTGCAAGCACACAAAATATTTGTCAAAATTTATCAATTTTTTGATTTTCTTTTATTATTTTA
TCGATTTT-ATTGTTCATCAAGGGGCA-TTTTGAGCTCGGGATCAGAATAGAACTTTGCTTATCTCTTAGCCTTATCTTC
AATAATTATTTATTCGTAAAAACATGATGAGAGATATTGTGCTTAAACAAGAGAAGACAAGCATGCCTTTT-CGATTTCT
CTCTTCTTCATCTTAACATTTATCTTATGTGGCACTTCTAAAATAGTCTTAGCA--ATTTATACAGGCCCTTACGAGTAG
GTGTAGCATTTTCGGTAAGAAAATTCATGGAAAAAATCTTGGGTAATCCTGTAACAAACCCGTAACAACACCGTAGGTCT
AGGATTATTGATAACAGTTTTGCTAAAGCACATCTAAATGTGCCATAAGTATTGCACATCTAAGTCATATGTCATTGATT
TTACATTAAGATTCGTGTGAATATTTTCTTTTTCTTTTTCTTTTTTTCTTTTATGCTTGATTCACTCACTTAGATGTGCA
ATAACTAAAGCATATCTAGATGTGCCCTAGACACACCCGATTGATAAATATCTTCTAGAAAGGAAATCTGCCAAGGCTGA
TCTGTCACAACGGGATTGGCCCCCAAACGATAAGGAGCAGAGAGCCACATAAAAATGGCGTAACCTAAACGGCCAGAC--
CCCAACCAAAACCTTCTCTTCCACCCTACTGCGAACCAAGTGGGAAGCCATGGCCACCATCACCACCATGGCCTTCATGG
CCACCTTTCCGGCTCCCAGAACCGTTGCGCAGCCCCCGGCCACGCTGCCATCTCGCCCGAACGTCGTGTCGTTCGCCGCC
CGGGCGATGCGCGCGCACGGCCGACGGCTGGTGGCCGTGGCTGGCTCGCCGTCCACGCCCCCGGAGCTGGCGCAGAAGGT
GACGGAGAGCATCAAGCAGGCGGAGGAGACGTGCGCGGGGGACCCGGAGGGCGGCGAGTGCGTGGCGGCGTGGGACGAGG
TGGAGGAGCTCAGCACGGCGGCCAGCCACGCGCGCGACCGCAAGAAGGAGCACAGCGACCCGCTGGAGGAGTTCTGCGAG
GACAACCCCGAGACCGACGAGTGCCGCACCTACGACAGCTAGCCGTGCGTAGCTGCTCGTGCCGGCTTCTGCCATTGCCG
GACGTCATCATGAGCGGTAGCTTCTGGCTTAGCTTGCGCGGCACATTGGCATCTTGGGCGTGT-AAGTTTGGTTTGTTGC
TTTATTTGGCTTAGCTTACAATAAAGCAAGCAGAGATTTGTTTGTAAAATTATAAGA---TACTATAATGTTTATTAGGA
GTTCTGAGTGTGATATCAAATTATCAAGGCAAGCTGCGAGGTATCATGCTAATCAAGTAAGACTTCAATTACATCATACA
CAAATCAGAGTGGCGCAGCGGAAGCCTGGTGGGCCCATAACCCACAGGTCCCAGGATCGAAACCTGGCTCTGATATTTTT
CCTTCATTTTTGCAGATTTTTTCTTTTTTCCCGTTTGCTTTTTTTTTTTAAATCCGTTTTTCCCCTTTGCTTTTACTAGT
TCTTTGCA---GCATGCTCTTTCAGAAACGATGTAGGGTCATATTGACGTACTGTACTTAGCAACTGGTTGTGACATTTA
GGTTTTCACATGGCAACATTATTTCAGTTCGCTACAAACTTACAATTATACATCAT------------------------
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--AAGTTCTTGGGAATCCAAAGAAGCCAGCATAAAAATACATACCAACAAAAACATCTATACCGACGGTGCAGCCGAGGT
TTTCAGCCTGAAAGACTGAACACTAAACCGACAAAAACATCTATACCGTCCAAGTAATTCCACCGTGCTGACCAAAGAAA
CCTAGATACGTGAAAAAATAAAGTGCAATCGAGGTTTCGGTCTGAACCAACACAACATTTATTTCATCCAGGTTATTGCA
CGGTGTTCACCAGAGAAACCAAGATACAAGGGAAATGACAGTAAAA-TGCTGAACCCACTGCGGCGTCTATTCCGTCCAA
GTAATGCAGGGT-------GTTGGCACGATGTAGTCGCCGCTTAGGACAGAGAAGAACTCATGTCCCAGAATCCAATTTC
CAGCTTAAGCACCCGAAGAAAAGCCTCTTCAGCACTCTTGACA
>chr4D_1
GTGCTTTGAGGTTCATGCGGGCCAAGAATTTGACAAATATTTTGAATATTTTTTGTGGTAAACTTTCACAAATGTTTTGA
ATTTTTTTA--TGGTGAACTTTGACAAATGTTTTGTATACTTGCAAAATTTCAGCATGAAATAACATTTGTTAAAGTCGT
GGCAAAAAAA--TTGATGCTCCAAAAATTCTAGTTTTGGAAACATTTGGAAATGTTGAATTTGTTTTTTTTCCATGAATG
TTATTTTCTGCTGAAATTTTACAAGCACACAAAATATTTGTCAAAGTTTATCAATTTTCTGATTTTCTTTTATTATTTTA
TCGATTTTTATTGTTCATCAGGGTGCA-TTTTGAGCTTGGGATCAGAATAGAAATTTGCTTATCTCTTAGCCTTATCTTC
AATAACTATCTATTCGTAAAAACATGGTTAGGAATATTGTGCTTAAATAAGAGAAGACAAGCATTT-TTTT-CGATCTCT
CTCTTCTCCATCTTAACATTTATCTTATGTGGTACTTCTAAAATATTCTTAGCATCATTTGTACCGGCCCTTAC--GTAG
GTGTAGCATTTTCGGTAAGAAAATTCAGGAGAAAAATCTTGGGTAATCCTGTAACAAACCCGTAACAACCCCGTAGGTCT
AGGATTATTGAAA-------------------------------------------------------------------
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-------------------------------------------------ATCTTCTAGAAGGGAAATCTGCCCAGGCTGA
TCTGTCACAACGGGATTGGCCCCCAAAAGATAAGGAGCAGAGAGCCACATAAAAATGGCGTACCCCAAACGGCCAGAGAT
CCCAACCAAAACCTTCTCTTCCACCCCGCTGCGAACCAAGTGCGAAGCCATGGCCACCATCACCACCATGGCCTTCATGG
CCACCTTTCGGGCTCCCAGAACCGTTGCGCAGCCCCCGGCCACGCTGCCATCTCGCCCGGACGTCGTGTCGTTCGCGGCC
CGGGCGATGCGCGCGCACGGCCGGCGGCTGGTGGCCGTGGCGGGCTCGCCGTCCACGCCCCCGGAGCTGGCGCAGAAGGT
GACGGAGAGCATCAAGCAGGCGGAGGAGACGTGCGCGGGGGACCCGGAGGGCGGCGAGTGCGTGGCGGCGTGGGACGAGG
TGGAGGAGCTCAGCGCGGCGGCCAGCCACGCGCGCGACCGCAAGAAGGAGCACAGCGACCCGCTGGAGGAGTTCTGCGAG
GACAACCCCGAGACCGACGAGTGCCGCACCTACGACAGCTAGCCGTGCGTGCCTGCTCCTGCCGTCTTCTGCCATTGCCG
GCCGTCATTCGA--------------GCTTAGCTTGCGTGGCACATTGGCATCTTGGGCGTGTTAAGTTTGGTTTGTTGC
TTTATTTTGTTTGGCTTAGAATAAAGCGAGCAAAGATTTGTTTGTAAAATTACAAGATACTACTATAATGTTTATTAGGA
GTTCTGAGTGTGATATCATATTATCAAGGCAAGATGCGAGTGACCATGTTAATTAGTGCCCACTCAACTATATAG-CACA
CAAATCAGAGTGGCGCAGCGGAAGCGTGGTGGGCCCATAACCCACAGGTCCCAGGATCGAAACCTGGCTCTGATATTATT
CCTTCATTTTTGCAG--------TTTTTTCCCCTTTGCT------TTTTTTATATGTTTTTCCCCTTTGCTTTTACTTCG
---TTGCA---GCATGCTCTTTCAGAAACAATGTAGGGTCATAT-GACGTACTGTACTCAGTAACTGGTTGTGACGTTTG
GGTTTTCACATGGCAACATTATTTCAGTTCGCTACAAACTTACGATTATACATCAAAA----------------------
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----GTTCTTGGGAATCCAAAGAAGCCAGCATAAAAATACATACGGACAAAAACATCTATACCGACATTGCAGCCGAGGT
TTTCAGAATGAAAGACTGAACACTAAACCGACAAAAACATCTATACCGCCCAAGTAATTCCACGGTGTTCACCAAAGAAA
CCAAGATACGTGAAAAAATAAAGTGCAATCGAGGTTTCGGTCTGAACCAACACAACATTTATTTCATCCAGGTTATTGCA
CGGTGTTCATCAGAGAAACCAAGATACAGGGGAAATGACAGTAAAA-TGCTGAACCCACTGCAGCATCTATTTCGTCCAA
GTAACGCACGGT-------GCTGGCACGATGCAGTCGCCGCTTAGGACTGAGAAGAACTCATGTCCCAGAATCCAATCTC
CAGCTCGAGCACACGAAGAAAAGCCTCTTCAGCATTCTTGACA
>chr4B_1
GTGCTTTGAGGTTCATACGGGCCAAGAATTTGACAAATATTTTGAATATTTTTTGTGGTAAACTTCCACAAATGTTTTGA
ATATTTTTT--TGGTGAACTTTGACAAATGCTTTGTATACTTGCAAAATTTCAGCATGAAATAACATTTGTAAAAGTTGT
GGCAAAAAAA--TTGATGCTCCAAAAATTCTAGTTTTGGAAACATTTGGAAATGCTGA-----TTTTTTTTTCATGAATG
TTATTTTCTACTGAAATTTTACAAGCACACAAAATATTTGTCAAAGTTTATCAATTTTTTGATTTTCTTTTATTATTTTA
TCAATTTTTATTGTTCATCAGGGTGAATTTTTGAGCTTGGGATCAGAATAAAAATTTGCTTATTTCTTAGCCTTATCTTC
AATAACTATCTATTCGTAAAAACATGGAAACGG--ATTGTGCTTAAATAAGAGAAGACAAACATTT-TTTTTCGATTTCT
CTCTTCTCCATCTTAACATTTATCTTATGTGGCACTTCTAAAATATTCTTAGCATCATTTATACGGGCCCTTAC--GTAG
GTGTAGCATTTTCGGTAAGAAAATTCAGGAGAAAAATCTTGGGTAATCCTGTAACAAACCCGTAACAACCCCGTAGGTCT
AGGATTATTG-AA-------------------------------------------------------------------
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-------------------------------------------------ATCTTCTAGAAGGGAAATCTGCCCAGGCTGA
TTTGTCACAACGGGATTGGTCCCCAAAAGATAAGCAGCGGAGAGCCACATAAAAATGGCGTACCCCAAACGGCCAGAC--
CACAACCAAAACCTTCTCTTCCACCCTCCTGCGAACCAAGTGCGAAGCCATGGCCACCATCACCACCATGGCCTTCATGG
CCACCTTTCCGGCTCCCAGAACCGTTGCGCAGCCCTCGGCCACGCTGCCATCTCGCCCGGACGTCGTGTCGTTCGCGGCC
CGGGCGATGCGCGCGCACGGCCGGCGGCTGGTGGCCGTGGCGGGCTCGCCGTCCACGCCCCCGGAGCTGGCGCAGAAGGT
GACAGAGAGCATCAAGCAGGCGGAGGAGACGTGCGCGGGGGACCCGGAGGGCGGCGAGTGCGTGGCGGCGTGGGACGAGG
TGGAGGAGCTCAGCGCGGCGGCCAGCCACGCGCGCGACCGCAAGAAGGAGCACAGCGACCCGCTGGAGGAGTTCTGCGAG
GACAACCCCGAGACCGACGAGTGCCGCACCTACGACAGCTAGCCGTGAGTAGCTGCTCCAGCCGTCTTCTGCCATTGCCG
GCCGTCATCATGAGCGGTAGCTTCTGGCTTAGCTTGCGTGGCACATTGGCATGTTGGGCGTGT-AAGTTTGGTTTGTTGC
TTTATTTGGCTTGGCTTACTATAAAGCGAGCAGAGATTTGTTTGTGAAATTACAAGA---TACTATAATGTTTATTAGGA
GTTCTGA-----ATATCAAATTATCAAGGCAAGCTGCGAGGTAGAGTGCTAATTAAGGTGCACTTCAATAGCATATCACA
CAAATCAGAGTGGCGCAGCGGAAGCGTGGTGGGCCCATAACCCACAGGTCCCAGGATCGAAACCTGGCTCTGATATTTTT
CCTTCA---------------------------------------TTTTTAATCTGTTTTTCCCCTTTGCTTTTAGTTCG
---TTGCAGCAGCATGCTCTTTCAGAAACTATGTGGGTCATATT-GACGTACT-----TAGCAACTGGTTGTGACGTTTA
GGTTTTCACATGGCAACATTATTTCAGTTCGCTACAAACCTACAATTATACATCAAAAGTTCTTTTGCGCTGTCTGTCCT
ATGAATTATGTAAGGTTGGTTTTCAGTAATGAAAATCGGAAGGGGCGAGCCCTTCTTTGATCAAAAAAAAAAAATACATC
AAAAGTTCTTGGGAATCCAAAGAAGCCAGCATAAAAATACATACCGATAAAAACATCTATACCGACAGCGCAGCCGAGGT
TTCCAGCCTGAAAGACTGAACACTAAACTGACAAAAACATCTATACCATCCAAGTAATTCCACGGTGTTCACCAAAGAAA
CCAAGGTACGTGGAAAAATAAAGTGCAATCGAGGTTTCGGTCTGAACCAACACAACAATTATTTCATCCAGGTTATTGCA
CGGTGTTCAACAGAGAAAACAAGATACAGGGGAAATGACAGTAAAAATGCTGAACCCACTGCGGTATCTATTTCGTCCAA
GTAATGCTCGGTGTTGGCAGTTGGCACGATGTAGTCGCCGCTTAGGACTGAGAAGAACTCATGTCCCAGAATCCAATCTC
CAGCTCGAGCACACCAAGAAAGGCCTCTTCAGCTCTCTTGACA
>SNPs
------------S--------------------------------------------------------S----------
----S----SS-----------------------------------------------------S------SS-------
--------S-SS--------------------------------------------------------------------
--------------------S------------------------S----------------------------------
--------------------S--S-------------S---------------S--------------------------
-----S---S----------------S-S--S---------------S----------------SSS-------------
-------S-------------------------------------S------------------S---------SS----
---------------------------S-SS--------------------------------------S----------
-----------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S-----------S-------
---------------------------S----------------------------------S--S--------------
---------------------------S--------------S-------------------------------------
-----------------------------------------------------------S----------------S---
-----------------------S-----------------S--------------------------------------
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--------------S-----------------------------------------------------------------
----------------------------------------------------------S-----S---------------
-S------------------------------------S-----------------------------------------
------------S--------------S------------------------S---------------------------
-------------------------------------------S---------S---SSSS--------SS---SSS---
-------------------------S------------------------------------------------------
---------------SSSSSSSS---------S------SSSSSS----S----S----------------------SSS
SSS--------------------------S--------------S------------------------------S----
-------------------------------------------------------S------------------------
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---------------------------------------------S--------------------S-------------
---------------------------------------------------------------S---S-S----------
--S-----------------------------------------------------------------------------
---------S------------------S------------------------------------S------S-------
--------S---------------------------------------S----------------------------S--
-----SS-----S------------------------------
>forward_843
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-----------------------GCCCTAGACACACCCGATTG-------------------------------------
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>reverse_2393
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------------------------------------------------------------------------CCGTCCAA
GTAATGCAGGGT--------------------------------------------------------------------
-------------------------------------------
