>input_sequence_81676
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---------------------------------------------------------ATGTTAAAGACTTTGATACTCGA
CGACTGGTGTTTGCATGCTGACCTCAGTGCTGTGATTCATTTTATCCAACACTCGCCAAATCTTGAGAAGGTTACTCTTA
GATTTATTGAGGTATATCTTTTGTGGATGGATAGCTGTGTGTTATCAAAATTACGTCACATGGCTGTTTGACTCAGTATG
ATTTGTCTGTTGTAGGAATTTGATTCTTCAATGGTGACAGAAGGAGATAACAATTTGTTGGAAGGAACATTTTCATCTGA
CCATCTTAAAATGGTTGAAATCAAATCTTTAAAGGTTGATGGAAGAATTAACAAAATTCTCAAGATCCTAAGTGCTTGTG
GCATATCACTGGAAAAAATCAATATCCGACAAGCCAATACAAGTTCCTGA------------------------------
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>chr2D_1_TraesCS2D01G410500
TGTTTCCCGAGCAACTATCTGAATATCCAGAGCCTCTACTCTCCCAGCACCTCACTAGGCTAGAGCTCCTTTGCGTCCGC
TGCGCTCTTGATTTTTCGGGCTGTCCAGTGCTAGTGGACCTTAAGATGGAGCAGTGCGTTACACATGCTGCTGAAATGTT
GTCTCCATCCTTGCGACAGCTGAGTACGGTCTGCTGTGAACTCTCCATGCGGTATCGTACTCAAATAACCTTACCGAATC
TTGTTCGCTTGGAATTAATTAATTGTGCTGGTAGAGTTCCATTACTTGAAAGCTTGCCATCATTGGAAACGGCGGTTGTT
GATCTTGGGGAGTTTTCTGAGGATCGGTGTCCTGCGTCAGGCTGTCTTGATGAGGATCCATGCTTTGGTTGTCGTTTTCA
TTTTGAGTTCATTGCTCAACGCGGAAGTAGCTACTTCTTCCAGGGTTTGTCTCGAGCCAAACACTTAGAGTTGTTAGCTT
CCTATAATGATGCGGTATGTATGCTTGCAGCCCCTTTATTTTGTCTTCTAATGTTATATCAAGAACTATACCATCAGCTA
ACATGCATGTACCCAGTTTATGCTCTCAAACTGTCATACTTATTTCCGTACCAGAAATTATCAACCAACATCATAATTCA
GTCAAAATTTAGTGCAGTCAGCCAGTCACATTCATTGTCTTCAATCTATGTAGTTACTCGAAACTGGTTCAGGAATCCCC
TCATGATCTGACCTTTTTGTTATTTGATAATTGTCACTAGCTTCTACTAATTCCAAAATGGTACCTTTACTATGACAA--
--------------TGACACACAAAATATATACATGCTACAATT-TTTTCCATTATTTGTTTCTAGTTACTATGGAAATT
TCAATCTCTAGTTCTCTACCGAAATGATTGGTCTCATTCTCTACATAAATGATCTAGCAGGCTTACTCAATCTCGATTAT
TTGCATGTTGTGTAGTTCATTTTTCAAAGAGATTTGAAGTGGCGCCCGACATTTCCCATGTTAAAGACTTTGATACTCGA
CGACTGGTGTTTGCATGCTGACCTCAGTGCTGTGATTCATTTTATCCAACACTCGCCAAATCTTGAGAAGGTTACTCTTA
GATTTATTGAGGTATATCTTTTGTGGATGGATAGCTGTGTGTTATCAAAATTACGTCACATGGCTGTTTGACTCAGTATG
ATTTGTCTGTTGTAGGAATTTGATTCTTCAATGGTGACAGAAGGAGATAACAATTTGTTGGAAGGAACATTTTCATCTGA
CCATCTTAAAATGGTTGAAATCAAATCTTTAAAGGTTGATGGAAGAATTAACAAAATTCTCAAGATCCTAAGTGCTTGTG
GCATATCACTGGAAAAAATCAATATCCGACAAGCCAATACAAGTTCCTGACCTGGATGTGAGTTAAAAGTATCGAATTGT
GTATGCTTCTTCTGTTTACGCTATTTTCCTTTGCATGTTTTACTTATAAACGGGGCAAAAGAGAACCTCAAACTTAAAAT
AACTAATTATTTATTTGAATGTATGTGGAAGAAACATAGAAACTACATTCGTGAAAAACAGTGTAGTTTTACTTATGAAC
GGGGCAAAAGAGAACCTCAAACTTGAAATAACTAATTATTTATTTGAATGTATGTGGAAGAAACATAGAAACTACATTCG
TGAAAAACAGTGTAGTTTTACTTATAAACGGGGCAAAAGAGAACCTCAAGCTTGAAATAACTAATTATTTATTTGAATGT
ATGTGGAAGAAACATAGAAACTACATTCGTGAAAAATAGTGTAGTACATTTATCTAACTGGTAAAACCTATCCAAAATTA
CACCATATCAGTTTGGGTTAAATTTACAATATTGACACTCATTTTGATTGAATTTGCTGCCATTCGGATTGCACTTATGA
AAACTACCGTCTGAATATCTTATTCTTCACTTGAGCTATGGTTCCTGCTCTGTA-----TGGGTGCCCTTGCCCATGAAA
ACTTTCCATTTTTATGTAAAAAGCTGTCTGATGGTCGAAATGAACTATCATATTCTGCAAAATATCCCATATATTTCGAT
AACGATGTCCCGAGTTGATTGTGTTGTTTGAATACTTTTACAAGTTCAAATTTTGTGTGCACAGGTTCCAGCTTCAGCTA
AAGGTAAGAAGATGTGATCTGCTGGTCTTTCCAACTTCTCTTTGATTATTTTGAAACGTACCGATCAAAGCTTTATTATG
GGCATGATGTAGCTGTCTGCCGTAAATCTGTGTTAATGGTTGTGCAAGATAACTTGTCTTGATTATCTTGGATTATTTTG
CAGACTCTTATAATGCACCTAATTGTTTGAATATTTGGCAACCCTCTGTCATGAAGATGATCATGTTTGCTTGTGGTACC
ATGAATGAGGTCATA
>chr2B_4
---TTCCCGAGCAACTATCTGAATATCCAGAGCCTCTACTCTCCCAGCACCTCACTGGGCTAGAGCTCCATTGCATCCGC
TGCGCTCTTGATTTCTCGGGCTGTCCAGTGCTAGTGGACCTTAAGATGGAGCAGTGCGTCACACATGCTGCTGAAATGTT
GTCTCCATCCTTGCGACAGCTGAGTATGGTCTGCTGTGAACTCTCCATGTGGCATCGTACTCAAGTAACCTTACCGAATC
TTGTTCGCTTGGAATTAATTAATTGTGCTGGTAGACTTCCATTACTTGAAAGCTTGCCATCATTGGAAACGGCGGTTGTT
GATCTTGGGGAGTTTTCTGAGGATCGGTGTCCTGTGTCAGGCTGTCTTGATGATGATCCATGCTTTGGTTGTCATTTTCA
TTTTGAGTTCATTGCTCAACGCGGAAGTAGCTACTTCTTCCAGGGTTTGTCTCGAGCCAAACACCTAGAGTTGTTAGCTT
CCTATAATGATGCGGTATGTATGCTTGCAACCCCTTTATTTTGTCTTCTTATGTTATATCAAGAACCATACCATCAACTA
ACGTGCATGTACCCAGTTTATGCTCTCAAACTGTCATACTTATTTCCGTACCAGAAATTATCAACCAACATCATAATTCA
GTCAATTTTAGTG---------CAGTCACATTCATTGTCTTCAATCTATGTAGTTACTCGAAACTGGTTCAGGAATCCCC
TCATGATCTGATCTTTTTGTAATTTGATAATTGTCATTAACTTATACTAATTCCAAAATGGTACCTTTACTATGACAAAT
ATATAGAAATTTTTTGACACACAAAATATATACATGCTACAAATCTTTTCCATTATTTGCTTCTAGTTACTATGGAAATT
TCAATCTCTAGTTCTCTACCGAAATGATTGGTCTCATTCTGTACATAAAGGAACCAGCCGGCTTACTCGATCTCGATTAT
TTGCATGTTGTGTAGTTCATTTTTCAAAGAGATTTGAAGTGCCGCCCGACATTTCCCATGTTAAAGACTTTGATACTCAA
CGACTGGTGTTTGCATGCTGACCTCAGTGCTGTGATTCATTTTATCCAACACTCGCCAAATCTTGAGAAGGTTACTCTTA
AATTTGCTGAGGTATATCTTTTGTGGATGGATAGCTGTGTGTTACCAAAATTACGTCACATGGCTGTTTGACTCAGTATG
ATTTGTCTGTC-TAGGAATTTGATTCTTCAATGGTGACAGAAGGAGATAACAGTTTGTTGGAAGGAACATTTTCATCTGA
CCATCTTAAAATGGTTGAAATCAAATGTTTAAAGGTTGATGGAAGAATTAACAAAATTCTCAAGATCCTGAGTGCTTGTG
GCATATCACTGGAAAAAGTCAATATCCGACAAGCCAATACAAGTTCCTGACCTGGATGTGAGTTAAAAGTATCGAACTGT
GTATGCTTCTTCTGTTTACGCTATTTTCCTCTGCATGTTTTACTTATAAACGGGGCAAAAGAGAACCTCAAACTTAAAAT
AACTAATTATTT----GAATGTATGTGGAAGAAACATAGAAACTACATTCGTGAAAAACAGTGTAGTTTTGCTTATAAAC
GGGTCAAAAGAGAACCTCAAACTTAAAATAACTAATTATTTATTTGAATGTATGTGGAAGAAACGTAGAAACTACATTCG
TGAAAAACAGTGTAGTTTTACTTATAAACGGGGCAAAAGAGAACCTCGAACTTGAAATAACTAATTATTTATTTGAATGT
ATGTGGAAGAAACATAGAAACTACATTCGTGAGAAACAGTGTAGTACATTTATCTAACTGGTAAAACCTGTCCAAAATTA
TACCATATCAGTTTGGGTTAA-TTTACAATATTG-CACTCATTTTTATTGAATTTGCTGCCATTCGGATTCCACTTATGA
AAACTAACGTCTGAGTATCTTATTCTTCACTTGAGCTATGGTTCCTGCTCTGTAGTGTATGGGTGCCCTTGTCCATGAAA
ACTTTCCATTTTTATGC-AAAAGCTGTCTGATGGTCGAAATGAACTATTATATTCTGCAAAATATCCCATATATTTTGAT
AATCC--TCCCGAGTTGATTGTGTTGTTTGAATACTTGTACAAGTTCTAATTTTGTGTGCACAGGTTCCAGCCTCAGCTA
AAGGTAAGAAGATGCGGTCTGCTGGTCTTTCCAACTT-TCTTTGATTATTTGGAAACGTAACGATCAAAGCTTTATTATG
GGCATGATGTAGCTGTCTGCCGTAAATCCGTG--AATGGTTTTGCAAGATAACTTGTCTTGATTATCTTGGATTATTTTG
CAGTCTCTTATAATGCACCTAATTGTTTGAATATTTGGCAACCCTCTGTCATGAAGATAATCATGTTTGCTTGTGGTGCC
ATGAATGAGGTCATA
>SNPs
SSS-----------------------------------------------------S------------S----S-----
--------------S--------------------------------------------S--------------------
--------------------------S----------------------S--S-----------S---------------
-----------------------------------S--------------------------------------------
----------------------------------S------------------S-------------------S------
----------------------------------------------------------------S---------------
-----------------------------S-------------------S----------------S---------S---
--S-----------------------------------------------------------------------------
-----SS--SSSSSSSSSSSSS----------------------------------------------------------
-----------S--------S---------------S--S---S------------------------------------
------------------------------------------S----------------S--------------------
----------------------------------------S--------S--S-S---S---------S-----------
-----------------------------------------S------------------------------------S-
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S----SS-------------------------------------S-----------------------------------
----------SS----------------------------------------S---------------------------
--------------------------S------------------------------------------S----------
-----------------S----------------------------------------------------------S---
------------------------------S-------------------------------------------------
------------SSSS------------------------------------------------------S-----S---
---S--------------------S---------------------------------------S---------------
-----------------------------------------------S-S------------------------------
--------------------------------S---S--------------------------------S----------
S--------------------S------------S----------S------------------------S---------
------S-------S--------------------------------------------------------S--------
----------------SS------------------------------S---------------------------S---
--SSSSS------------------------------S---------S------------------------S-------
--------------S-S--------------------S-------------S--------S-------------------
----------------------------S---SS-------S--------------------------------------
---S------------------------------------------------------S------------------S--
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>forward_213
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---------------------------------CTGTGAACTCTCCATGCGGT---------------------------
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>reverse_1039
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------------------------------------------------------------------------------GA
CGACTGGTGTTTGCATGC--------------------------------------------------------------
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>forward_394
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-----------------------------------------------------GGATCCATGCTTTGGTTGTCG------
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>reverse_1597
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----------------------------------------------------------------------------GAAC
GGGGCAAAAGAGAACC----------------------------------------------------------------
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