>input_sequence_81666
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-----------------ATGGATTCATGTGCGCTACCGCACGGCCCTGGATCCCACACGCCGCCGCTGCGCGAAAGGATC
CCCACACGC------CGCCGCCTACCCAAAGCGCCTCCACTGGCCGACAGCTTGGTGCTCCACCAGTCCCAATGCTGCAT
CCAAGGTGGGCTGCTGGATCTCGTCCCCTCCTCTGCGTGGAGCCCTGCTGGAGGCCCTCCTCCTCGACAGGATGCCGTCC
ACCTAGGGCCAGTGGGAGAAAGCCGCCGTGGCTCACCGATGCTCCGGTGAGGTACTCCAAATTATCTCTACTGCTTTGGT
GAGGCCACCCTCCTCTCCCTACAGTAGCCTCAAACTTTCCCTCATCACAGAAGAAGTTGAGTAATGTGGCACTGTTGTTG
ATTGTCTAGGTTGTAG----------------------------------------------------------------
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>chr2A_1_TraesCS2A01G238100
TCATGATCTCATCCAAAAATAATAATGCCATTTATATTTTAATTTAATGCATAGAACCGCCTTTTACACATAGATGCACT
ATGCCTCGGCCCGTTCTCACAAACGCACTATATATCTCTCTATCTACCGCATAAGTGCACACACTTTATATGCATCGACA
TTTCTCTTTCACACATGCTCACAATCTCTCTCGGGGTGTTGAGGAGTCTCACGCACATGCTCTCTCTTTATCTCTCTCTC
TCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTGACTACTATGTACCACTCTTTTCACTAATCT
CAGCTGGAAAACACTATTTCTCTCACATGCATATATACACACGCACGGTCTCTACTAGCCCTTTATACGCACACACACAC
ACACACACACACACACACACACACATATATATATATATATATATAGTGG-CACTATTCTGATCCTGGGATCAGAATAGTT
ATTTGGATCACGACCAGCTCTATATAGAGAGCGATCGGATATTCCCGAACTTGCAAAACCAACAACTAAAAAAACACT--
-----CACACACTAGGCCACGAACTGCCCACTCTCCCACCCGACCCCCC-TTCCCCTCGATGCCCTACCGCCGCGGCGAC
CTCCCAGACCCCGCTGTCGCGCGACCTTTTGGCGCCGCCTCCC---CCTCCTCCTGGAACCAGCGCCATCGACCTGCCTC
TTTCTGGCGCACCGACGACCTCGCCCCGCCCCA---------------------------------------------AC
CGACGCCGCATCCTTTCGGCGCGCCGCCGACCTCGCCCCAGCTCGACCGACATCCGATCCCCCGACCTCCCATCATCCTT
CGCCGGCGACTGCCAGACCACTGCTGTCGCACGCCTAAGCTCCCCTTCTTCCTTCTCCTTACCGTCTCATCGGTGCAGCA
GCGCCCAAAATCCTACGCGCATCCCGGCGCCGCCACCAGGGCCTGGAACCCCAGATGCCGTCGCCGGTCCAAGATCCCGG
CGCGCCGCCACAGGGCCATGGATTCATGTGCGCTACCGCACGGCCCTGGATCCCACACGCCGCCGCTGCGCGAAAGGATC
CCCACACGC------CGCCGCCTACCCAAAGCGCCTCCACTGGCCGACAGCTTGGTGCTCCACCAGTCCCAATGCTGCAT
CCAAGGTGGGCTGCTGGATCTCGTCCCCTCCTCTGCGTGGAGCCCTGCTGGAGGCCCTCCTCCTCGACAGGATGCCGTCC
ACCTAGGGCCAGTGGGAGAAAGCCGCCGTGGCTCACCGATGCTCCGGTGAGGTACTCCAAATTATCTCTACTGCTTTGGT
GAGGCCACCCTCCTCTCCCTACAGTAGCCTCAAACTTTCCCTCATCACAGAAGAAGTTGAGTAATGTGGCACTGTTGTTG
ATTGTCTAGGTTGTAGTCCAGAAAAGTTTTGGACAGAAGTTCAAGTGATTCTACTCGTGCAATTTAGAGATATTGATGTT
GATGATTATGTAGAAAAAT-TTAACAGAAGTTCAAAGTTTGAATGAAAAGGAAA-AAATAGCTCCATTTTAAGAAGAAAG
CTGAAAAAACCATTGTCATAGGGCCAACCATGAAGGTCTGATGTTGAGAAGGTCAGGTGCATGATGCATCTCCGGCCATC
CTAGCCTCGTCTTCTTCCTTCTCTCCCTGCCCCCGATGGAAACAGAGGAGGGAGCAGGCGAGGGCGCTGCCGATGACGGC
CGGCCTGCTCCGGCTGGCTTCGGCCAGGCGGAGGCCACCTGAGGACGCGGGCAGTGTGCCGCTCCTGCCTGGAGCAGCAG
CATCGCTGGAGAGGGGACGGGGCGTCGGCGGCTCGCGGAGTAGAGGGCTTGGGCGGCTCGGCCGATCCTTGGGGTCACGG
CCACACTGACTCCAACGAAGAACGAAGAGGCTGGGGAGGGTCATCGGAGCACGGGGAAGATGTGGGCCAGGTGAAGGAGT
GGAGGGGTGGCTCGGGTCGGCCAAATTTGAGCGGAGCACTACGGCGAGGCTTCGGCCATGGGAGGGCAACGAGAGCTCCT
CGAGCTCGGGGAAATGGCTAGGCAGGACTAGAGGAGGTGCAGGAGGCCAGTGGTGAAGCAACACGGGGTCGAGCTGGCCT
TATATAGGCGGGAGAGAGGGGTGACGCATTGTCGTCTCCGCGGACGCGTGGCCGGCTCCGCGGACGTGTGCCCACGCGCA
TGGGCTCGGAGGCAGGCGACGAGGCAAGCACAGTGGAGGCTCTACGGGGTAGAGGAGGCCAATGGAGCGCAGCGAGGATG
ACGACATCGACGAACAGAGCCAAACCACCACTATGCTCTCATGGGCATTCGATGGCGAGAGTCAGTGAGCATCGATGAGG
GGTCTTACTGAGAGGGGGAGAGGTCTAGGAGGATGGCGACGACACGGTAAATCTGTTA
>chr4B_436
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-----------------------------------TATATATATAGGTGACACTATTCTGATCCTGGGATCAGAATAGTT
ATTTGGATAGGGT-CAGCTCTATATAGAGAGCGATCGGATATTCCTGAACTTGCAAAACCAACAACTAAAAAAAGAAAAA
AACCA-ACACACCAGGCCACGAACTGTCCACTCTCCCACCCGACCC-CC-TTCCCCCTGATGCCCTGCTGCCGCGGCGAT
CTCCCAGATCTCGCCGTCGCGCGACCTTCTGGCGCGGCCTCCCCTGCCTCCTCCTGGAACCAGCACCACCGACCTGCCTC
CTTCCGGCGCGCCGACGACCTCGCCCCGCCCTACCGACATCGCCTCCTTCCGGCGCGCCGCCGACCTCGCCCCGCCCTAC
CGACGTCGCCTCCTTCCGGCGCGCCGCCGACCTCGCCCTAGCTCGA---------------CCGACCTCCCATCATCCTT
CGCCGGCGACCGCCGGACCTCCGCCTCCGCACGCCTAAGCTCTCCTTCTTCCTTCTCCTCACCCTCTCATCGGCGCAGCA
GCGCCCAAAATCCTACGCGCATCCTCGCGCCGCCACCGGGGCCTGGAACCCCAGATGCCGTCGCCGGTCCAGGATCCCGG
CGCGCC---ACGGGGCCATGGATTCCCGTGCGCTACCGGACGGCCCTGTATCCCACACGCCGCTGTTGCGCCAAAGGATC
CCCACACGCCGTCGTCGCCGCCTACCCAAAGCGCCTCCACTGGCCGACAACTCTGC-CTCCACTAGCCCCGATGGTGGAT
CCATGGTGGGCTGCTGGATCTCGTCCCCTCCTCTGCGTGGAGACCTGCTGGAGGCCCTCCTCCCCGACAGGATGCCGTCC
ACCTAGGGCCAGTGGGAGCAAGCCGCCATGGCTCTCCGATGCTCCGGTGAGGTACTCCCAATTATCTCTACTGCTCTGGT
GAGGCCACCCTCCTCTCCCTGCCGTAGCCTCAAACTTTCCCTCGTCGTAGAAGAAGTTGGGTAATGTGACGCTGCTGTTG
ATTGTCTAGGTTGTAGTCCAGAAAAGTTTTGGACAGAAGTTCAAGTGGTTCCACTCCTGTAATTTAGAGATATTGATGTT
GATGATTATGTA-AAAAAAATTAACAAAAGTTCAAAGTTTGAATGAAAAGGAAA-AAATAGCTCCATTTTAAGAAGAAAA
CTGAAAAAGCCATTGTCACAGGGCCGAACATGAAGGTCTGATGTTGAGAAGGTCAGGTGCATGATGCATCTCCGGCCATC
C-------------------------------------------------------------------------------
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>chr6D_474
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--------------------------------------------------------------------------ATAGTT
ATTAGGATCACGGCCAG-----TATAGAGAGCGATCTGATATCCCCGAACTTGCAAAACTAACAACTAAGAAAAGAAAAA
ACACCCACGCACCAGGCCACGAACTGCCCACACTCCCACCCGACCC-CCATTCCCCCCGATGCCCTGCCGCCACGGCGAC
CTCCGAGATCCCGCCATGGCGCGACCTTCTGGCGCCGCCTCCCCCGCCTCCTCCTAGAACCAGCGCCACAGACCTGCCTC
CTTCCGGCGTGCCGCCGACCTCGGCCCGCCCCA---------------------------------------------AC
CGACGCCGCCTCCTTCCGGCGCGCCGCCGACCTCGCCCCAGCTCGACCGACCTCA---------------CATCATCCTT
TGCCGGCGACGGCCGGACCCCCGCGGCCGCGCTTCTAAGCTCTCCTTCTTCCTTCTCCTCACCCTCTCATCGGCGCAGCA
GCGCCCTAAATCCTACGCGCATCCCCACGCCGCCACCAGGGCCTGGAACCCCAGATGTCGTCGCCGGTCTAGGATCCTGG
CGCGCGGCCACGGGGCTATGGATTCCCGTGTG-CACCGCATGGACCTGGATCCCACACGCCACCGTTGCGCCAAAGGATC
CCCACACGCCGC---CGCCGCCTACCCAAAGCGCCTCCACCGGCCGACAGCTCGGCGCTCCATCAGTCCCAATGGTGGAT
CCATGGTGGGCTGCTGGATCTCGTCCCCTCCTCTGCGTGGAGCCCTGCTGGAGGCCCTCCTCCTCGACAGGATGCTGTCC
ACCTAGGGCCAGTGGGAGCAAGCCGCCGTGGCTCTCCGATGCTCCGGTGAGGTACTCCCAATTATCTCTACTGCTCTGGT
GAGGCCACCCTCCTCTCCCTACCGTAGCCTCAAACTTTCCCTCGTCGCAGAAGAAGTTGGGTAATGTGGCGCTGCTGTTG
ATTGTCTAGGTTGTAGTCCAGAAAAGTTTTGGACAGAAGTTCAAGTGGTTCCACTCCTGTAATTTAGAGATATTGATGTT
GATGATGATGTA-AAAAAA-TTAACAGAAGTTCAAAATTTGAATGAAAAGGAAA-AAATAGCTCCATTTTAAGAAGAAAA
CTGAAAAAGCCATTGCCACAGTGCCGACCATGAAGGTCTGATGTTGAGAAGGTCAGGTGCATGATGCATCTCCGGCCATC
C-------------------------------------------------------------------------------
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>chr4D_681
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----------------------------------------------------CCTAGAACCAGCGCCACCGACCTACCTC
CTTCCGGCGCGCCGACGACCTCACCCCGCCCCA---------------------------------------------AC
CGACGCCGCCTCCTTCCGGCGCACCGCCGACCTCACCCCAGCTCGACCGACCTCCGATCCCCCGACCTCCCATCATCCTT
CGCCGGCGACCGCCGGACCTCCGCCGCCGCGCGCCTAAGCTCTCCTTCTTTCTTCTCCTCATCTTCTCATCAGCGCAGCA
GCGCCCTAAATCCTACGCGCATCCCCGCGCCGCCACCGGGGCCTGGAACCCCAGATGCCGTCGCCGGTCCAGGATCCCGG
CGCGCCGCCACGGGGCCATGGATTCCCGTGCGCCACCGCACGGCCCTAGATCCCACACTCCGCCGCTGCGCCAAAGGATC
CCCACACGCCGC---CGCCGCCTACCCAATGCGCCTCCACTGGCAGACAGCTCGGCGCTCCACCAGTCCCAATGCTGGAT
CCATGGTGGGCTACTGGATCTTGTCCCCTCCTCTGCGTGGAGCCCTGCTGGAGGCCCTCCTCCTCGACAGGATGCCGTCC
ACCTAGGGCCAGTGGGAGCAAGCCGCCGTGGCTCTCCGATGCTCCGGTGAGGTACTCCCAATTATCTCTACCGCTCTGGT
GAGGCCACCCTCCTCTCCCTACAGTAGCCTCAAACTTTCCCTCGTCACAGAAGAAGTTGGGTAATGTGGCGCTGTTGTTG
ATTGTCTAGGTTGTAGTACAGAAAAGTTTTGGACAGAAGTTCAAGTGGTTCTACTCCTGTAATTTAGAGATATTGATGTT
GATGATTATGTA-AAAAAA-TTAACAGAAGTTGAAAGTTTGAATGAAAAGGAAAAAAATAGCACCATTTTAAGAAGAAAA
CTGAAAAAGCCATTGTCACAGGGCCGACCATGAAGGTCTGATGTTGAGAAGGTCAGGTGCATGATGCATCTCCGGCCATC
C-------------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------SS--------------------------------
------------S-------------------------------------------------------------S-SS--
------------S---------------------------------S---------S---------S-------------
--------S-----S-------------S---------------------------------------S-----------
S---S-----S---------------------------------------------------------------------
---------S-----S-----------------------------------S----------------------------
----------S---S----S-S--S-S---------------S----------------S---S---------S------
-------------------------S---------------------------------------------S--------
-----------S-------------SS--------------------------------------------S--------
----------------------------------------------------S--S---------------------S--
---S----------------------------------------------------------------------------
------------------S---------------S-----------------------S----------------S----
-------------------------------------------S---------------S----------S---------
-----------------------------------------------S--------S--S--------------------
------------S-----S------------------------------------------------------------S
--------S---------S------S------------------------------------------------------
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_196
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----------------GCTCACAATCTCTCTCGGGG--------------------------------------------
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>reverse_2100
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-------------------AGGCAGGACTAGAGGAGGTG-----------------------------------------
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