>input_sequence_81657
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------ATGGAGCCCAAAGAGAAGCCCGAAACGACCA
GCGCTGCCAGCCCACCTCCACCGCGGCTGGACTGCATAAAGTGCTTCGATGCGCTATGGTTCTGCTATACCCCTCTCCAC
CAGCTGCAGACCTACTACCGCCACGGGGATTTTGACACCTGCTTCGGCAAGTGGGGTGATCTCGTTGACTGTCTCTCGCT
CAAGACGAAGCGGAGGGCGGAGGTAGAGGAGATCCTCATCGCGCGGGAGAAGGCCAAGCCGCACATCTGGACCTTCCGGA
CTGCCGAAGAGGCGCAGGCGAACTGGTGGCAGATGTACAAGCACAAGGTGGTGATGTCGTCGCCACCCAAGACTGCAGGT
TCTGCTGTGCCTCCTCCTGGATCATCTGGTGTTCTTTCCTGA--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>chr1A_1_TraesCS1A01G375700
CCGCCTTGCGACACAATTTTCTAAACTTTTTGCCTCTGCAAACCAGACCAGTAATTAATATAATGCAATATTGGACACAC
AATACCAGTAGGATCTGAGGGCATGATGATTCCGTTAAAGCACGCGTTGTTCCTGGTCTTCCAAATTGACCAAACTACAG
CAGCTACTCCACAAGCTACAAACCCTCTACTACTAACAGGGAGCTTACTAATCCAGACAGGGATACCATAAAAAACACCA
GGCATCTCTTGCAAATTAAACATACATTTGATCACATGCCAAACATATCTAGCAACAGGGCACAAGAAGAACAAGTGATC
TATCCCTTCTCTAGTATTACAAAACACACAATTTGCACTTCCTTTCCATCCCCGGTGCAATAAGATACCTTTGGTCAGTA
TACTTTTTTCAGTAACTAGCTACAAGAAGACTTTAATCTTAAGGACAGTATAACTAAGATTGCCCTCATGTTTACATCAT
GGCCGATCTTGCCCAAAATATGTTTAGTATCTTGCTCTGATCCGTACTACTAGTCATTAATGACAGTACAAGAAAGATGG
CCAATGAAGAATTGCTGAGGGATAAGCTTGATAGTTACTGGCAGGCCTTATAAAAA-ATTGACCTACTAATTAGTGAACC
TTTTAAGAATATATGTACTTTATAATAAGACATTTTCGTTTACGCGATGTTAACTA------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------TTATCCAGAAAATTTGATTTTG
TAACACTATACTTGGATAGTTTGCAGTATCATTATTTGTATGTATGCTCTCACTTGTGCCTAGTCACAT------CTCCA
AAATCTGATATCTCTATCAAAATAGGGCTTGTCCAGTAGACCAGTACCCCCAAGCCGCTGTGGCAGCAGCAGCGGTGAGG
TGAGGAAGGTGGGAAGGGTTATCCTTTTCTTCCGATCCGTCTTCTTCTGTATTTCTGTTGTTTTGTGTGGTTCTAGTAAT
GCGAGCATATCTCACATGTAAATCCCTTTCTTGTTAGGCGGTTATAAGCATGGAGCCCAAAGAGAAGCCCGAAACGACCA
GCGCTGCCAGCCCACCTCCACCGCGGCTGGACTGCATAAAGTGCTTCGATGCGCTATGGTTCTGCTATACCCCTCTCCAC
CAGCTGCAGACCTACTACCGCCACGGGGATTTTGACACCTGCTTCGGCAAGTGGGGTGATCTCGTTGACTGTCTCTCGCT
CAAGACGAAGCGGAGGGCGGAGGTAGAGGAGATCCTCATCGCGCGGGAGAAGGCCAAGCCGCACATCTGGACCTTCCGGA
CTGCCGAAGAGGCGCAGGCGAACTGGTGGCAGATGTACAAGCACAAGGTGGTGATGTCGTCGCCACCCAAGACTGCAGGT
TCTGCTGTGCCTCCTCCTGGATCATCTGGTGTTCTTTCCTGAGAATTGAAGGTCAGGGGAGCCTACAGAAGCGTCGGTTG
TGCTTTTG-TGCGCTGTGCTTAG-ACCGCTGGTCTTTGTTCAAACTTGAATGTACCCTGGCAGGGTAAATAATTGGAACC
TTGGATGGAAAGATACCTTAATCCTGTTCTGTAGATCATGGCAGGCAACTGAACCAAAATGTTCTGGTGGT----TCTTT
TGCTATTTTTTGCACCAGCTATGATGTTAGCCTTTTTGCTTACTTCC---TTGCCAGGCATAAATGTTTTGGCTTGTGCT
GTAGTGTGTTCTCATTAATTTCTGAATGAAGACTAATTAATTTTTGTTCAAATGTGGTCAGGAATGGGTATAGCCTCGGG
TTGCCAGATTTGGTTTGCTTTTCTGTTTGTTGGTGTTTG-----TTTTTCAAGATTTATTATTTGCGAGTGTTTTACGTG
CAGATT---CTGGATTAGAAATGACGGAGACAAGATGCCATGCTGCCAGTGCCACCGCTGCCCTGGATGGTAACCAAATC
CATCTGCAGCAATGCTGCTTTTGTTATCTG----AAT---ATCACACTTGGTTCTTCAAGCAATTGTTCTGCAGCCTTGC
ACACCCCATTTGTCCTTTGCACTGTCAAGAAAATTCTACTCTCTGTCTGTAGTATACTCT---CTTGTTGGAAGTTAGAA
GAGTTAGATTATCTCAAAGAAAATTGTTCTAGGACACTTGGTAATTTTTAAATTGTTCTATTGCGGAATCAAGGAATTGA
CATTTCTTAGAGCGAGTTGGTTGGGTTCATATCAGAGTCAATCATAATGAGTAAATCAACAGAAGCAACCATTCTATTTA
TTTAAGAAAATGGAAATGTGTCTGCACTTCCCACAACCAAAATAGGACCATATCTCACATAATAGATACACATAGAAAAT
GGAATACTTTGCGAGATGTTGTGTAGTTTGTTCAATATGCATGCAATTGTGGGGAAAAAAACATAGTTGGTGCCCTATTT
TACATCATCTGCTATGATTCTGATGCCCT
>chr1D_1
CCGCCTTGCGACACAATTT-CTAAACTTTTTGCCTCTGCAAACTAGACCAGTAATTAATATAAAGCAATATTGGACACAC
AATACCAGTAGGATCTGAGGGCATGATGATTCCATTAAAGCACGCGTTGTTCCTGGTCTTCCAAATTGACCAAACTACAG
CAGCTACTCCACAAGCTACAAGCCCTCTACTACTAACAGGGAGCTTACTAATCCAGACAGGGATATCATAAAAAACACTA
GGTATCTCTTGCAAATTAAACGTACATTTGATCACATGCCAAACATATCTAGCAACAGGGTACAAGAAGAACAAGTGATC
CATCCCTTCTCTAGTATTACAAAACACACAATTTGCACTTCCTTTCCATCCCCGGTGCAATAAGATATCTTTGGTCAGTA
TACTGTTTTCAGTAACTAGCTACAAGAAGACTTTAATCTTAAGGACAGTATAACTAAGATTGCCCTCATATTTACATCAT
GGCCGATCTTTCCCAAAATATGTTTAGTATCTTGCTCTGATCCGTATTACTAGTCATTAATGACAGTACAAGAAAGATGG
CCAATGAAGAATTGCTGACGGATAAGCTTGATAGTTACTGGCAGGCCTTATAAAAACATTGACCTACTAATTAGTGAACC
TTTTAAGAATATATGTACTTTATAATAATACATTTTCGTTTGCGCGATGTTAACTACTCCCTTCGTTCCTAAATATATGT
CTTTTTAGAGATTCCACTATGGACTACATACGGAGCAAG----GAGTGAATCCACAATCTAAAATATGTCTATATACATC
TGTATGTAGTCCATATTGAAAACTCTAAAAAGACTTATATTTAGAAATGGAGGGAGTATTATCCAGAAAATTTGATTGTG
CAACACTATGCTTGGATAGTTTGTAGTAGCATTATTTGTATGTATGCTCTCACTTGTGCCTAGTCACATCTCCTCCTCCA
AAATCTGATATCTCTATCAAAATAGGGCTTGTCCAGTAGACCAGTACCCCCAAGCCGCTGTGGCAGCAGCAGCGGTGAGG
TGAGGAAGGTGAGAAGGGTTATCCTTTTCTTCCGTTCCGTCTTCTTCTGTATTTCTGTTGTTTTGTGTGGTTCTAGTAAT
GCAAGCATATCTCACATGTAAATTCCTTTCTTGGTAGGCCGTTATAAGCATGGAGCCCAAAGAGAAGCCCGAAACGACCA
GCGCTACCAGCCCACCTCCGCCGCGGCTGGACTGCATAAAGTGCTTCGATGCGCTATGGTTCTGCTATACCCCTCTCCAC
CAGCTGCAGACCTACTACCGCCACGGGGATTTTGACACCTGCTTCGGCAAGTGGGGCGATCTCGTTGACTGTCTCTCGCT
CAAGACGAAGCGGAGGGCGGAGGTAGAGGAGATCCTCATCGCGCGGGAGAAGGCCAAGCCGCACATCTGGACCTTCCGGA
CTGCCGAAGAGGCGCAGGCGAACTGGTGGCAGATGTACAAGCACAAGGTGGTGATGTCGTCGCCACCCAAGACTGCAGGT
TCTGCTGCGCCTCCTCCTGGATCATCCGGTGTTCTTTCCTGAGAATTGAAGGTCGGGGGAGCCTACAGAAGCGTCGATTG
CGCTTTTGGTGCGCTGTGCTTAG-ACCGCTGGTCTTTGTTCAAACTTGAATGTACCCTGGCAGGGTAAATAATTGGAACC
TTGGATGGAAAGATGCCTTAATCCTGTTCTGTAGATCATGGCAGGCAACTGAACCAAGATGTTCTGGTGGT----TCTTT
TGCTATTTTTTGCACCAGCTATGATGTTAGCCTTTTTGCTTACTTCC---TTGCCAGGCATAAATGTTTTGGCTTGTGCT
GTAGTGTGTTCTCATTAATTTCTGAATGCAGACTAGTTAATTTCAGTTCAAATGTGTTCAAGAATGGGTATAGCCTCAGG
TTGCCAGCTTTGGTTTGCTTTTCTGTCTCCTGGTGTTCTATTTTTTTTCGAGAT----TTATCTGCCAGTGTTTTTATGC
TGCAGATAACTGGATTAGAAGTGACGGAGACAACAGGCCATGCTGCCA------TCACTACCCTGGATGGTAAACAAATC
CATCTGCAGCAATGCTGCTTTTGTTATCTG----ATGAAAACAACACCTGGTTCTTCAAGCAGTTCTTCTGCAGTCTTGC
AAACTCCATCTGCCCTTTGCACTGTCAATAAAAATTTACTGTACTCA----------------CTTATTCGAAGTTAGAA
GAGTTAGATTATCTCGAAGAAAATTGT-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>chr1B_1
CCGCCTTGCGACACAATTT-CTTAACTTTTTGCCTCTGCAAACCAGACCAGTAATCAATATAATGCAATATTGGACACAC
AATACCAGTAGGATCTGAGGGCATGATGATTCCATTAAAGCACGCGTTGTTCCTGGTCTTCCAAATTGACCAAACTACAG
CAGCTACTCCACAAGCTACAAGCCCTCTACTACTAACAGGGAGCTTACTAATCCAGACAGGGATATCATAAAAAACACTA
GGTATCTCTTGCAAACTAAACGTACATTTGATCACATGCCAAACATATCTGGCAACAGGGCACAAGAAGAACAAGTGATC
TATCCCTTCTCTAGTATTACAAAATATGCAATTTGCACTTCCTTTCCATCCCCGGTGCAATAAGATATCTTTGGTCAGTA
TACTTTTTTCAGTAACTAGCTACAAGAAGACTTTAATCTTAAGGACAGTATAACTAAGATTGCCCTCATATTTACATCAT
GGCCGATCTTGCCCGAATTATGTTTAGTATCTTGCTCTGATCCGTATTACTAGTCATTAATGACAGTACAAGAAAGATGG
CCAATGAAGAATTGCTGAGGGATAAGCTTGATAGTTATTGGCAGGCCTTATAAAAACATTGATCTACTAATTAGTGAACC
TTTTAAGAATATATGTACTTTATAATAATACATTTTCGTTTACGCGATGTTAACTTCTCCCTTCGTTCCTAAATATATGT
CTTTTTAGAGATTCCACTATGGACTACATACGGAGCAAAAAATGAGTGAATCTACATTCTAAAATATGTCTATATACATC
CGTACGTAGTCCATATTGAAAACTCTAAAAAGACATATATTTAGAAACGGAGGGAGTATTATCCAGAAAATTTGATTTTG
CAACACTATGCTTGGATAGTTTGTAGTAGCGTTATTTGCATGTATGCTCTCACTTGTGCCTAGTCACATCTCCTCCTCCA
AAATCTGGTATCTCTATCAAAATAGGGCTTGTCCAGTAGACCAGTACCCCCAAGCCACTGTGGCAGCAGCAGCGGTGAGG
TGAGGAAGGTGAGAAGGGTTATCCTTTTCTTCCGATCCGTCTTCTTCTGTATTTCTGTTGTTTTGTGTGGTTCTAATAAT
GCAAGCATATCTCACATGTAAATTCCTTTCTTGGTAGGCGGTTATAAGCATGGAGCCCAAAGAGAAGTCCGAAACGACCA
GCGCTGCCAGCCCACCTCCACCGCGGCTGGACTGCATAAAGTGCTTCGATGCGCTATGGTTCTGCTATACCCCTTTCCAC
CAGCTGCAGACCTACTACCGCCATGGGGATTTTGACACCTGCTTCGGCAAGTGGGGCGACCTCGTTGACTGTCTCTCGCT
CAAGACGAAGCGGAGGGCGGAGGTAGAGGAGATCCTCATCGCGCGGGAGAAGGCCAAGCCGCACATCTGGACCTTCCGGA
CTGTCGAAGAGGCGCAGGCGAACTGGTGGCAGATGTACAAGCACAAGGTGGTGATGTCGTCGCCACCCAAGACTGTAGGT
TCTGCTGCGCCTCCTCCTGGATCATCTGGTGCTCTTTCCTGAGAATTGAAGGTCGGGGGAGCCTACAGAAGCGTCGATTG
CGCTTTT-GTGCGCCGTGCTTGG-ACCGCTGGTCTTTGTTCAGACTTGAATGTACCCTGGCAGGGTAAATAATTGGAACC
TTGGATGGAAAGATACCTTGATCCTGTTCTGTAGATCATGGCAGGCAACTGAACCAAGATGTTCTGGTGGATTGCTCTTT
TGCTATTTTTTGCACAAGCTCTGATGCTAGCTTTTTTGCTTAGTTGC---TTATCAGGCATAAATGTTCTCC--------
--------------------------------------------------------------------------------
-----------------CTC--CTGGTTCTTCAAGCAAT-----TGTTATCTGAATATCACAC-----------------
--------------------------------------------------------------------------------
---CTGCAGCAATGCTGCTTTTGTTATCTG----AAT---ATCACACCTGGTTCTTCAAGCAATTGTTCTGCAGCCTTGC
ACACTCCATCTGTCCTTTGCACTGTCAAGAAGATTCTACTATCTGCCTGTAGTGTACTCGCCGCTTATTCGAAGTCGGAA
GAGTTGGATTATCTCGAAGAAAA---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>chr5A_1418
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------AGAAGCGTTGATTG
TGCTTTTGGTGCGCTGTGCTTATTACCACCGGTCTTTGTTCAAACTTGAGT-TACCCTGACAGGGTAAATAATTGGAACC
TTGGATGGAAGGATACCCTAATCATGTTCTGTAAAGCATGGCAGGCAACTGAAC-----------GGTGGT----TCTTA
TGCTATTTTTTGCACCAGCTATGATGTTAGCTTTG-TGCCTAGTTGCTTATTATCAGGCATAAATGTTTTGGTTTGAGCT
GTGGTGTGTTCTCATTAATTTTTAAATGCAGACTAGTCAATTTCAGTTCAAATGTGGTTAAGAATGGGTATAAGATCGGA
TTGCCAGATTTGGTTTGCTT--CTGTTTCTTGATGTTCT-----TTTTTGAGAT----TTATTTCTGAGTGATTTCAGGC
TGCAGACACCTGGACTAGAACTGATGGAGGCAACAGACCATGCTGCCA------CCACTGCCCTCGATGGTAAGCAAATC
CATATGTGACAGTGTTGCTTTTGTTATCTTATGAAAT---ACCACACCTGGTTCTGCAAGCATTTTTTCTG---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>SNPs
-------------------S------------------------------------------------------------
---------------------------------S----------------------------------------------
---------------------S-------------------------------------------S------------S-
--S------------------S----------------------------------------------------------
-------------------------------------------------------------------S------------
---------------------------------------------------------------------S----------
----------------------------------------------S---------------------------------
--------------------------------------------------------------------------------
----------------------------S---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
S--------S-------------S----S---------------------------------------------------
--------------------------------------------------------------------------------
-----------S--------------------------------------------------------------------
--S--------------------S---------S----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------S----------------------------------------------S---------------------S---
--------------------------------------------------------------------------------
---------------------------------------------------------S----------------------
--------------------------------------------------------------------------------
----------------------------S------S-------SS---------------S-------------------
----------------------------S--------SS----------S-S--S-SS-----------------SS-SS
SSS-SS--------------S------------S-S------------SSSSSS--S----------------S------
-----------------------------------------------S--------------------------------
----S----S------------------------------S----S-------S-----S------S--S----------
---------------S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_114
--------------------------------------------------------------------------------
-------------TCTGAGGGCATGATGATTCCG----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>reverse_1901
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------GGAATGGGTATAGCCTCGGG
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
