>input_sequence_81647
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------TGTTGGTGATCCAGCCATGTTAGGACTTTGGAGGTAGG
AGTAGTCCAGTATCGGAGAGAGGTAGAGA-GCGTCCATGGACGTGTTCATCCACGAGGACTACGTGAACAAGCGCAACAT
GGTGAGGAGGGAGCAGAGGAAGAAGACGCAGTTGCAGGTGCTGCAGCTGGGCAGTCCAGGCGCATGCAGACCGCCGCCGG
CGCACGGGGAGGACAGCCCGGGAGCGGGAGCGCCGAGGCAGTGCCTGACACCAACCGGCGTCTCACCCTCGTCCACCGTC
GGGTCTCCCGCATCAGGCTCGTCGGAGGGAGCCGTCTCATCGGATCACCGCCGTCACCTCTTCGATTGCCTGAAGCCGTA
CT----AGGCAACCGAGGTTATGTGTGAGGTTAAAGAATAAA--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
>chr2A_1_TraesCS2A01G290400
TGGGAACGCACGAAGGACGGTGAGCGCATCAACTTCGATATGAAAGAC-TGCCGATCTCAAGAAGAGGCTGTGAGCCGCA
TAAAATTTTGTGGGTGTTAGGACATGAATCTTTTTCAGGGTTCTGGTGTGATAGTCAATAATAAGCATAATAATGTGTGT
ATATCCTTTGGAAATTTTGGGTGCGAACAGATATCTTTTGTTAAATCAAAAGGTGCACCGAGACTTGCTCCGCTTAATTC
TGCACGCGGTAACGAAAAATTTCACCGCTCTTATTCGGCATTGTGATTGCATGAGCACTTTAGAGCGGGATGTGATGCCT
TTCAGCTCTCATGACCTAGCACTATCTGTGGTGAAGCTTTACTGATCTGAAGATAAAATGGAAACCGGGAGAGGGTCTAT
GAAAAAGACCAGTCCG-------GTGTGTTGGGTCCTGCTGAGTTTGCGGGATACATTTGGTTAGCG--------ACCAC
AAGGTGTTATGTGGTAGGGAAGGGGTGG----TGAATCCTGGTCACATCACACAAGCTACCA-TCTTTCCACATCTCCAG
TATTTTTTGTGGTTTCT-ATCAACTTCCCTGTCGCTGCATTGCCCCAAGAGCCCCCCAACCTGGAAGGCACCGTTGTCCC
TGCTGCTCTGCCAATGCACACCACGGATTCTAGAGCTTTTT---------------TTTTTTGCCATTTGACACATCAAT
TCTGACGAGCCCCGATTATTG----CTTTCACAAGAAGAGACAAGAATTGGTATCGTCACAATACACGAGAGTGAAAGAG
AG---AAAGCCCTGCATGAT---------------------------------TATTGCTCGCCCAGCTTCGCAGTGTAG
TTACTAGGGCATT--TTTTTTGTTGCCATCGTCTTTCGGCAAGCATTTCTTTTTGTAGCGTTGTGGACTTCACACTTGGC
ATAGACCAATGGCAGCTTGCGTGCTGTGCCTCGTAAAAAATGTTAAAATGGCGAGAGCGACGTGCTTGGCTTGAGACCAG
TCGTAGTAT---AATTGCCCCCTTCCTCTGCGTTTGTGCTCCTGTTGGTGATCCAGCCATGTTAGGACTTTGGAGGTAGG
AGTAGTCCAGTATCGGAGAGAGGTAGAGA-GCGTCCATGGACGTGTTCATCCACGAGGACTACGTGAACAAGCGCAACAT
GGTGAGGAGGGAGCAGAGGAAGAAGACGCAGTTGCAGGTGCTGCAGCTGGGCAGTCCAGGCGCATGCAGACCGCCGCCGG
CGCACGGGGAGGACAGCCCGGGAGCGGGAGCGCCGAGGCAGTGCCTGACACCAACCGGCGTCTCACCCTCGTCCACCGTC
GGGTCTCCCGCATCAGGCTCGTCGGAGGGAGCCGTCTCATCGGATCACCGCCGTCACCTCTTCGATTGCCTGAAGCCGTA
CT----AGGCAACCGAGGTTATGTGTGAGGTTAAAGAATAAACCTG-GGTTCTTCTGATGGTGAAGCTTGTTGCAACCCA
TTTTTGTGCTCGTATTTCAGCTATGTATGTATGGGTCGTTACAAGATCAACCCTAGTAAAGAGTGTTGCCTGCTATGAAC
AACTACAGCTTTTGGAATGGATTGTGTTAGTGCATTTAAACTCTCTAAGCACAGCATTGCAGTACTGAGTTTGGCCTTGA
GCTATCCCCTATTATGGAAGATTTGCAACAACATGAGCATCCCTCGTAAGGTACTTCCAGATATTGAGATCTCTACACTC
TGGCACTGGCTGCCGCCTCCTTGATTTGCTCGATTGTGAACACTCCGAAGAAGCTGTCGTCTATGACGGCGTTGATCACG
GCGTAGGCGACATCGTCCACGTTCACAGGGGGTGCGAGGACCAGGTCCGAACCAGGCAATGCACTCAATGGTTTGGTGAA
ATTTTCGACAGAGGAAAGTAGCTTCTCTAGTGGTTGCCCTACGATGTCGAGCGGTATCTCGTAGCCATCTACTTTCCTTT
TACCGTAAATAAACCCAGGCCTCAATACAACACCTGAAAGATAAATGTTAGATTGGATATACTCTGATAAACACATATGA
ACAAGATAAAGTAGCAGAGGTCTAACCTGAGGATGGGTATTTGGAGAGGACTTCAGATTCAGCCTTTCTCTTACCAGTGA
AATAGCCCGAGGTAAGGAGAAAGGATGGAAGGTTGTAATCATGAACAGAGATCAAAATAAATTTCGGGATCCCTGCAGAA
GAACATAGCAAACTGTTTATGTTATGTTCTTTGATATTTTTCAGACAATAAAAGGAAGAGTAAGCTAACTGCTAGGCAA-
-----CACAATATAACTTAATTGCGAAGTTTTCGACTATACAGCA---AGAAGTCTCAGCCGTTTGAAGTTTTCAATCTT
TAGTTGCAAAGGTTTAACCAGGATAGCAAGCTCCCTAACACAATATAACTTAAAATTTGATATTCCAGCAAAATGCACCC
TTAATGATAAAG
>chr2B_1
TGGGAACGCACGAAGGACGGTGAGCGCATCAACTTCGATATGAAAGAC-GGACGATCTCAAGAAGAGGCTGTGAGCCGCA
TACAATTTTGTGGGTGTTAGGACATGAATCTTTTTCAGGGTTCTGGTGTGATAGTCAATAATAAACATAATAATGTGTGT
ATATCCTTTGGAAATTTTGGGTCCGAACAGATATCTTTTGTTAAGTCAAAAGGTGCACCAAGACTTATTCCGCTTAATTC
TGCACGCGGTAACGAAAAATTTCGCCGCTCTTATTCGGCATTCCGATTGCATGAGCACTTGA-----------------T
TTCAGCTCTCATGACCTAGCGTGATCTATGGTGAAGCTTTACTGATCTGAAGATAACATGGAAACTGGGAGAGGATATAT
GAAAAAGGCCAAAGGCCAGTCTAATGTGTT-GGTCCTGTTGAGTTTGCGGGATGCATTTGCTTAGCG--------ACCAC
GAGGTGTTTTGTGGTAGGGGAGGGGTGGGTGATGAATCCTGGTCACATCACACAAGCTACCAATCTTTCTACATCTCCAG
TATTTATTGTGGTTTCTGATCAACTTCCCTGTCACTGCATTGCCCCAAGAGCCCCCCAACATGGAAGACACCGTTGTCCC
TGCTACTCTGCCAATGCACACCACTAATTCCTGAGTTTTTTTTGTTTTTTTTTGGCA----------TTGACACATCAAT
TCTGGCGAGTCTCGATTAAGCTACCCTTTCACAAGAAGAGACAAGAATGGGTATCGTCACAATACACAAGAGTGAAAGAG
AG---AAAGCCCTGTATGATTATTGCTTTCCCCGTAAGCAGAGACTGCGCGCTTATTGCTCGCCCAGCTTCGGAGTGTAG
TTACTAGGGCATTTTTTTTTTGTTCCCATCGTCTTTCGGCAAGCATTTCTTTTTGCAGCGTTGTGGACTTCACACTTGGC
ATAGACCAATGGCAGCTTGCGTGCTGTGCCTAGTAAAAAATGT-----TGGCGAGAGCGACGTGCTTGGCTTGAGACCAG
TCGTAGTATAATAATTGCCCCCTTCCTCTGCGTTTGTGTTCGTGTTGGTGATCCAGCCATGTTAGGACTTTGGAGGTAGG
AGTAGTCCAGGATCGGAGAGAGATAGAGA-GCGTCCATGGACGTGTTCATACACGAGGACTACGTGAACAAGCGCAACAT
GGTGAAGAGGGAGCAGAGGAAGAAGACGCAGTTGCAGGTGCTGCAGCTGGGCAGCCCAGGCGCATGCCGGCCGCCGCCGG
CGCACAGGGAGGACAGCCTGGGAGCGGGAGCGCCGAGGCAGTGCCTGACGCCAACCGGCGTCTTACCTTCGTCCGCCGTC
GGGTCTCCCGCGTCAGGCTCGTCGGAGGGAGCCATCTCATCGGATCACCGCCGTCACCTCTTCGATTGCCTGAAGCCGTA
CTAGGCAGGCAACAGAGGTTATGTGTGAGGTTAAAGAATAAACCTGGGGTTCTTCTGATGGTGAAGTTTGTTGCAACCCA
TTTTTGTGCTCGTATTTCAGCTATGTATGTATGGGCCGTTACAAGATGAACCCTTGTGAAGAGTGTTGCCTGCTATGAAC
AACTACAGCTTTTGGAATGGATTGTGTTACTGCATTTAAACTCTCTAAGCACAACATTGCAGTACTGAGTTTGGCCTTGA
GCTATCCCCTATTATGGAAGATTTGCAACAACATGAGCATCCCTCCTAAGGTACTTCCAGATATGGAGATCTCTACACTC
TGGCACTGGCTGCAGCTTCCTTGATTTGCTCGATTGTAAACACTCCGAAGAAGCTGTCATCTATGACGGCGTTGATCACG
GCATAGGCGACATCGTCCACGTTCACAGGGGGTGCTAGGACCAGGTCCGAACCAGGCAATGCACTCAATGGTTTGGTGAA
ATTTTCGACAGAGGAAAGTAGCTTCTCTAGTGGTTGCCCTACGATGTCGAGCGGTATCTCGTAGCCATCGACTTTCCTTT
TACCGTAAATAAACCCAGGCCTCAATACAACACCTGAAAGATAAACGTCAGATTGGATATACTCTCATAAACACATATGA
ACAAGATGAAGTAGCAGAGATCTAACCTGAGGATGGGTATTTGGAGAGGACTTCAGATTCAGCCTTTCTCTTACCAGTGA
AATAGCCCGAGGTAAGGAGAAAGGATGGAAGGTTGTAATCATGAACAGAGATCAAAATAAATTTCGGGATCCCTGCAGAA
GAACATAACAAACTGTTTATG-TATGTTCTTTGATAT-TTTCAGACAATAAAAGGAAGAGTAAGCCAGGTGCTAGGCAA-
-----CACAATATAACTTAATTGCGAAGTTTTCGACTATACAGCA---AGAAGTCTCAGCCGTTTGAAGTTTTCAATCTT
TAGTTGCGAAGGTTTAACCAGGATAGCAAGCTCCCTAACGCAATATAACTTAAAATTTGATATTCCAGCAAA-TCCACCC
TTAATGATAAAG
>chr2D_1
TGGGAACGCACGAAGGACGGTGAGCGCATCAACTTCGATATGAAAGACGTGCCGATCACAAGAAGAGGCTGTCAGCCGCA
TAAAATTTTGTGGGTGTTAGGATATGAATCTTTTTCAGGGTTCTGGTGTGATAGTCAATAAT---CATAATAATGTATGT
ATATCCC--GGAAATTTTGGGTGCGAACAGATATCTTTTGTTAAGTCAAAAGGTGCACCGAGACTTGCTCCGCTTAATTC
TGCATGCAGTAACGAAAAATTTCGCCGCTCTTATTCGGCATTGCGATTGCATGAGCACTTTAGAGCGGGATGTGATGCCT
TTCAGCTCTTATGACCTGGCACTATTTGTGGTGAAGCTTTACAGGTCTGAAGATAAAATGGAAACCGGGAGAGGATCTAT
GAAAAAGACC-------AGTCTAGTGTGTTGGGTCCTGCTGAGTTTGCGGGATGCATTTGCTTAGCGTCTTAGCGACCAC
AAGGTGTTATGTGGTAGGGGAGGGG----TGATGAATCCTGGTCACATCACACAAGCTACCAATCTTTCCACATCTCCAG
TATTTTTTGTGGTTTGTGATCAACTTCCCTGTCGCTGCATTGCCC----AGCCCCCCGACCTGGAAGACACCGTTGTCCC
TGCTACTCTGCCAATGCACACCACGAATTCTCGAGCTTTTTTTCTTTCTTTCTTTCTTTTTTGCCATTTGACACATCAAT
TCTGACGAGTCTC-------CTACCTTTTCACAAGAAGAGACAAGAATGGGTATCATCACAATACACGAGAGTGAAAGAG
AGAGAAAAGCCCTGCATGATTATTGCTTTCCCCGTAAGCAGAGGCTGCGCGCTTATTGCTCACCCAGCTTCGAAGTGTAG
TTATTAGTGC--TTTTTTTTTGTTGCCATCGTCTTTCGGCAAGCATTTCTTTTTGTAGCGTTGTGGACTTCACACTTGGC
ATAGACCAATGGCAGCTTGCGCGCTGTGCCTCGTAAAAAATGTTAAAATGGCGAGAGCGACGTGCTTGGCTTCAGACCAG
TCGTAGTA---TAATTGCGCCCTTCCTCTGCGTTTGTGCTCGTGTTGGTGATCCAGCCATGTTAGGACTTTGGAGGCAGG
AGTAGTCCAGAATCGGAGAGAGATAGAGAGGCGTCAATGGACGTGTTCATCCACGAGGACTACGTGAACAAGCGCAACAT
GGTGAGGAGGGAGCAGAGGATGAAGATGCAGATGCAGGTGCTGCAGCTTGGCAGCCCAGGCGCGTGCCGGCCGCCGCCGG
CGCACGGGGAAGACAGCCCGGGAGCGGGAGCGCCGAGGCAGTGCCTGACGCCAACCGGCATCTCACCGTCGTCCATCATC
AGGTCTCCGTTATCAGGCTCGTCGGAGGAAGCCGTCTCATCGGATCACCGCCG---CCTCTTCGATTGCCTGAGGCCGTA
CT----AGGCAACCGAGGTTATGTGTGAGGTTAAAGAATAAACGTGGGGTTCTTCTGATGGTGAAGCTTGTTGCAACCCA
TTTTTGTGCTCGTATTTCAGCTATGTATGCATGGGCCGTTACAAGATGAACCCTTGTGAAGAGTGTTGCCTGCTATGAAC
AACTACAGCTTTTGGAATGGATTGTGTTAGTGCATTTAAACTCTCTAAGCACAGCATTGCAGTACTGAGTTTGGCCTTGA
GCTATCCCCTATTATGGAAGATTTGCAACAACACGAGCATCCCTCGTAAGGTACTTCCAGATATGGAGATCTCTACACTC
TGGCACTGGCTGCCGCTTCCTTGATTTGTTCGATTGTGAATACGCCAAAGAAGCTGTCGTCTATGACGGCGTTGATCACG
GCGTAGGCGACATCGTCCACGTTCACAGGGGATGCAAGGACCAGGTCCGAACCAGGCAATGCACTCAATGGTTTGGTGAA
ATTTTCGACAGAGGAAAGTAGCTTCTCTAGTGGTTGTCCTACTATGTCGAGTGGTATCTCGTAGCCATCGACTTTCCTTT
TACCGTAAATAAACCCAGGCCTCAATACAACACCTGAAAGATAGAGGTTAGATTCG--ATACTCTGATAAACACATATGA
ACAAAATAAAGTAGCAGAGATCTAACCTGAGGATGGGTATTTGGAGAGGACTTCAGATTCAGCCTTTCTCTTACCAGTGA
AATAGCCCGGGGTAAGGAGAAAGGATGGAAGGTTGTAATCATGAACAGAGATCAAAATAAATTTCGGGATCCCTGCAGAA
GAACATAGCAAACTGTTTATGTTATGTTCTTTTATATTTTTCAGACACTAAAAGGAAGAGTAAGCTAAGTGCTAGGCAAC
CGCAACACAATATAACTTAACTGCGAAGTTTTCAACTATACAGCAAGGAGAAGTCTCAGCCGTTTGAAGTTTTCAATCTT
TAGTTGTGAAGGTTTAACCAGGATAGCAAGTTCCCTAACACAATATAACTTAAAATTTGATATTCCAGCAAA-TGCACCC
TTAATGATAAAG
>SNPs
--------------------------------------------------------------------------------
----------------------------------------------------------------S---------------
--------------------------------------------S-----------------------------------
-----------------------S-------------------S------------------------------------
--------------------------------------------------------------------------S-----
-----------SSSSS-------------------------------------S------S-------------------
-------------------S------------------------------------------------------------
-------------------------------------------------------------------S------------
----S--------------------S-----S------------------------------------------------
---------S-S------SSS---------------------------S-------------------------------
------------------------------------------------------------------------S-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------S--------------------------------------
----------S-----------S---------------------------------------------------------
------------------------------------------------------S------------S-S----------
-------------------------------------------------S-----------------S------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------S-----------S------S--S----------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------S---------------
----------------S---------------------------------------------------------------
-----------------------------------S--------------------------------------------
---------------------------------------------------------------------S----------
---------------------------------------------S----------------------------------
-------------------S------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------S-----------
--------------------------------------------------------------------------------
-------S----------------------------------------------------------------S-------
------------
>forward_395
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------AAATGGAAACCGGGAGAGGG-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
>reverse_1575
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------AGTAAAGAGTGTTGCCTGCT------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
