>input_sequence_81645
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---------------------------------------------------------------ATGTCGTCCGGTGACGC
TGCCACTTTTGC---TGCTGCTGCTG---CTCCTGTTTCTTACTTCGTCGTCGTTGGCGCTGGC------CGACGCGAGC
------GGGCAGTACCAGCAGGCCCGGCGGCTGCTGGTGTCGCCGCCGTCGACGCACAAGTCGGAGCAGCGGATGCGGGT
CGACGGCGCCAAGAAGCCCTTCAGGAACGCCGGCGCGATCCTGGGGCGCCGGAAGATACCAAGCTCCCGCTGGAACCCCA
TCCACAACAGATAAAAGGTACTACACACGCACTCTGATGTACCATGTGCCTGGCTGCCTGCTCGTCTCGTGGTGTACGGT
GGTCTGAGTAAGCTTGTTTGTCCTTGATTTCAGGCGTAGACGGACTAGATGGCCACGGAGCATCATCTAAGCAGTGA---
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>chr7D_1_TraesCS7D01G425800
GTCCATCACCGATCTCATCGTAGATTTTCCTGCCTTGTTTATTACAGATGCATGGCACACTCTGACTACGAAGGTGCAAA
CTGCAACTGTCATCGAGTCCAATTAACCACCTTACCCTTCTTCATATTTTTCTTTTTGCGGGGTTCTTTCATCCTCTTCA
TATGACAGACGCAGTTAACAAAGAGGACAAGATCAATCACCATGTTCCTGCGTGGGTGTGGAAGGTGAATCTGCAG----
-AAAACATATTTTGACTACACTTGAATACATACTTGATTCGGCCGGTAAAAGTGAGCAACGGCGCCGATCGATCAGAGAT
CGGTGTTTAATTTCCAAGCCTCATCACGTGATCCCGGCAAGACACACATGATTGCGAGTTTAAGAAATG-------CATT
CCCTGTAAGGAACCAACCACTAAACGCTGCGATTGCCGCCC-TTGGTCCAAGGCAGAAAAGGGTTTAGCAGTACAGTCAA
AGGCGCAGCACGCACATGACAGCGTTCAC--------------------------------GCAGATTAGACAATTTGGT
TAGCACATGATCGAGCCGATCCCACCGGCTTGATCC----GTTCATTAAGTAGATTAGCACCCCCTATGTATCTTGGTTA
CTCACCAGGATAGTGTATCGGGTTTGGATCGCTCAGTGTCAGTAGCGCCCGAACCGGGGACCTGTTAACGTTCTGAATGA
ATGTTTACGCTGTCAGATTCTCATCTGAACCGACCCTGATCCAG------------------------------GACCCG
ACCCGCAGACCGCCGCTAGCTAGTTGGTCTCGTAGCCA-TCGTATACTAAGCGATCACACTACTGAGTAACCTGCCAGTG
GAAATAAAACCCACGCAAAGCCCACGTTAACTCC-ACCACCACTTCTCCTCGATCCTTGCTCCGATCCACC---------
----CCACACCTCACCCAGCACCAT---TCCTTCCTCCCTTCCTTCCTCGTTGCACACTGTCCCAGAAGAACATACCA--
-CACCACCAGAGCAGAGCAGAGACCCGACCCCCCAGTAAGATGAG---TTCTTCCAGCAGGTTATGTCGTCCGGTGACGC
TGCCACTTTTGC---TGCTGCTGCTG---CTCCTGTTTCTTACTTCGTCGTCGTTGGCGCTGGC------CGACGCGAGC
------GGGCAGTACCAGCAGGCCCGGCGGCTGCTGGTGTCGCCGCCGTCGACGCACAAGTCGGAGCAGCGGATGCGGGT
CGACGGCGCCAAGAAGCCCTTCAGGAACGCCGGCGCGATCCTGGGGCGCCGGAAGATACCAAGCTCCCGCTGGAACCCCA
TCCACAACAGATAAAAGGTACTACACACGCACTCTGATGTACCATGTGCCTGGCTGCCTGCTCGTCTCGTGGTGTACGGT
GGTCTGAGTAAGCTTGTTTGTCCTTGATTTCAGGCGTAGACGGACTAGATGGCCACGGAGCATCATCTAAGCAGTGAGGG
CACACACAGGGATAGGAATTAAGAATGGAGACGCGTAACTGGAGGATCGAGCTTAGGATCGATCGGCGCATATGTGTGTA
AACCCTTTCAATTTTGTAGTTAGTTTTTATTTATTTTTAGTTTATAGGCATTTTTTGTGTGTAAGTTTAGCTATACG--T
AGCTA--GTCATATGGGAGTAACAGCTGGTTCTCCCCTTCATGTTGTCACTTGTTTCATAGCTGTT-----CCTTTGTTG
GATTTAGAAGGCTGCTGTAATATAACTTTGTCTGTTGGTGGTACACGGAACAAACTAGTCTCTTCTTTTGATTTTCGGTA
GTTCTGCATTGCGGCCTCTTAACAGCTAACTGATCTTCGCCAAAACAATA------------------------------
--------------------------------------------------------AGTTGGTTGAAAAAAAAAAAAATT
TTGGCAAAG-------------AAAAGAAGAAGTGAAAATCCAAATAAAAAGTACACAAAAAGAAAGCGTAGTTGTGGGC
CTGCTGATGCCAAAATATCTAGGCCGAAAGGAAAGCTACAAAACGCCTATTAAGCCCTCCTACGGGGAGAGCTCCTGCCC
GACGCTCGCGAAATGAGCAGCTTTAGCTAAAGGTGGTGCGCAAATGGACCGGCCCTATTCGCAGGCGCTGAGCGAATC--
AAAAAAATAATATTGCTCCCAACCTCACAATGCTTACTAGCGACGCTAGCTAGCCGAGCTAGGGACTAAGCACGGCTGAA
ATGCAGCGCTATGCTTAAAAGTAACAACTAAAAGTGGGAGATCCGGGGGTTTTCAACTTTTTCAACATTTCTTGGAAAAA
TGTGGACAAAGTTTCTTAAAAATGTGAACGGTTTGGAAATCGTAAATAAAATTCAAATATTCTTTGTGAAAACGTTTAAC
AAATTTCGAATATTTGAGCAATTTTTCTGAAATGTGAACAATTTAAAAAAAGTGAAGTTAAAATACACACTGAACATTTT
CTTAGTATACCGTGAACATTATTAAAATACACACTGAACATTTTTACAAGAATATACGATAATTTTT
>chr7A_144
TTCTT---------------------------------------------------------------------------
---------------------------------------------------------------------CTTCTTCTTCT
TATCACGGCGGCACTTAACAAAGTGGAGAACATCAATCACCATGTTCCTGCGTG--TGTGGAAGGTGAAGCCGCATGCAG
AAACACATATTTTGACCACACTC------------GATTCGGCCGGTGAAAGCATCGATCGGCCA---------------
---TGTTTAATTTCCGGGCG---TCACGTGATCCCGGCAAGACACACATGATTGCGAGCTTAAGAAATG-------CATT
CCCTGCATGGAACCAACCACTACACGCTGCGATTGCCGCTC-TTGGTCCAAGGCAGAAAAGGGTTTTGCGGTACAGTCAA
AGGCGCGGCACGCACATGACAGCGATCACACACACCCCGGCCTGACTTCTCCCGGTGGGAGGCGGATTAGATAAC-TGGT
TAGCACATGATCCAGCCGATCCCACCGGCTTGATCCATCCATTCATTAAGTAGATTAGCACACCCCT-------------
------------GTGTATCGGGTTGGGATCGCACAGTGTCAGCAGCACCCGTTCCGGGGGCCTGTTAGCGTTATGAATGA
ATGTTTACGCTGTCAGATACT-ATCTGAACCGAG----------------------------------------GATCCG
ACCCGCAGACCGCCGCTAGCTAGTTGGTCTCGTAGCCATTCGTATGCTAAGCGATCACACT---GAGTAACCTGCCACCG
GAAATAAAACCCACGCAAAGCCCACGTTAACTCCCACCACCACCTCTCCTCGATCCTTGCTCCCATCCATATTCTCTACC
CCTGCCACACCTCACCCACTACCTTTCCTT-------CCTTCCTTCCTCGTTGCACACTGCCCCAGAAGAACATACCA--
-CAGCACCAGAGCAGAGCAGAGGCCCGACCCCCAAGTAAGATGAGTTCTTCTTCCAGCAGGTTATGTCGTCCGGTGAGGC
TACCACTTCTGC---TGTTGCTGCTGCCGCTTCTGTTCCTGAGCTCATCGTCGTTGGCGCTGGC------CGGCGTCGAC
GGGACTGGACAGTACCGGCCGGCCCGGCGGCTGCTGGTGACGCCGCCGTCGACGCACAAGTCGGAGCAGCGGATGCGGGT
GGACGGCGCGAAGAAGCCCTTCAGGAACGCCGGCGCGATCCTGGGGCGCCGGAAGATACCGCGCTCCGTCTGGAATCCCA
TCCACAACAGATAAAAGGTAC---ACACGCACTCTGATGTACCATGTGCCTGGCTGCTTGCTCGTCTCGTGGTGTGCTGT
GGTCTGAGTAAGCTTGTTTCTCCTTGATTCCAGGCGTAGACGGACTAGATGGCCACAGAGCATC---TAGGCAGTGAGGG
CACACACAGGGATAGGAATTAAGAATGGAGGCACGTACATGGAGGGTCGAGCTTAGGATCGATCGTCGCATCTGTGTGTA
AACCCTTTCAATTTTGTAGTTAGTTTTTATTTTTTTC-AGTTTATAGGCATTTTTTGTGTGTAAGTTTAGCTATATATAG
CTAGTCGGTCAGATGGGAGTAACAGCTGGTTCTTCCCTTCATGTTGTCACTTGTTTCATAGCTGTTACGTTCCTTTGTTG
GATTTAGCA-GCTACTGTAATATAACTTGGTCTGTTGGTGGTACATAGAACAAACTAGTCTCTTCTTTTGATTTCAATAA
-TTCCGCACTGCGGCCTCTTAAGAGCTAACTGACCTTCGC-AAAAGAATAGTCCCTCTGTAAAGAAATATAAGAGTGTTT
AGATTACATTTAGATTAGTGATCTAAATGCTCTTATATTTCTTTACGGAGGGAGTAAGTTGGTTGAAATATATATATATA
TATATATATATATATATTGCAAAAAAAAAGAAGTAAAAATACACATAAA-------------GAAAACTTAGTTGTGGGC
CTGCTGATAGCAAAATATCTAGGTTGAAACGAAAGCTGCAATGTGCCTATTAAGCCCTCGTACGG-GAGGGCTCATGCTC
GACGCTCGTGAAATGGGCAACTTTTGCTAAAGGTGGTGCGCAAATGAACCGGCCCAATTCGCAGGCGCCGAGCGAAACGA
AAAAAAATAAAATTGCTCCCAACCTCGCGATGCTTACTAGCGACGCTAGCCAGCCAACCTAGGAACTAAGCACGGCTGAA
ATTCAACGCTATGCTT-AAAGTAACAACTAAAAGTGGGAGATCCGGGGGTTT-CAACCTTTTCAACATTTCTTGGAAACA
TGTGAACAAATTTTTTTAATGCGAACAAT-GTTTGGAAATCATAAA-AAAATTAGAATATTCTTTTTGAAAACTTAAAAA
AATGAAAATGTGATATTTTTC--------AAATGTGGATAATTTTAAAAAAGTGTAGTTAAAATACATACTTAACATTTT
CTTAGTATACCATGAATTTTATTTAAATACACACTGAACATTTTTACAAAAATATATGATGATTTTT
>chr7B_318
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--GTGTTTAATCTCCGAGCG---TCACGTGATCCCGGCAGGACACACATGATTGCAAGCTTAAATAATCTGCAGCCCAGT
CCCTGGATGGAACCAACCACTAAACGCTACGGTTGTCACTCTTTGGTCCAAAGCAGAAAAGGGTTTAGCGGTACAGTCAA
AGGCGCAGCACGCACATGACAGCGATCAC--------------------------------GCAGATTAGACAATTTGGT
TAGCACATGATCGAGCCGATCCCACCGGCTTGATCC----ATTCATTAACTGGATTAGCGCCCCTCACATATCTTGGTTA
CTCACCGTGCA----TATCGGGTTGAGATCGATCGGTCGGTAGCATCC---------GGACCCGTTTACGTTTACAGAAA
TTCAAACATTACGGTGTGATGGTCGGTAGTTGCAATCGTGGATCTCGTGGAATGCGGTTTGATCGGGGCTTCGAGATCCG
ACCCGCGGACCGCCGCTAGCTAGTTGGTCTCGTAGCCA-TCGTATACTAAGCGATCACACT---GAGTAACCTGCCGGTG
GAAATAAAACCCACGCAAAGCCCACGTTAACTCCCACCACCACCTCTCCTCGATCCTTGCTCCGATCCATACTC----CC
CCTGCCACACCTCACCCACTACCCT---TT-------CCTTCCTTCCTCGTTGCACACAGCCCCAGAAGAACATACCACA
CCACCACCAGAGCAGAGCAGAGACCCGAGTCCCAATCATGATGAGTTCTTCTTCCGGCAGGTTGTGTCGTCAGGTGACGC
TGCCACTCCTCCTCATGCTGCTGCTG---CTCCTGTTCTTGAGTTCGTCATCGTTGGCGTTGGCCGACGTCGACGCGAGT
------GCGCAGTACCGGCAGGCCCGGCGGCTGCTGGTGTCGCCGCCGTCGACGCACAAGTCGGAGCAGCGGATGCGGGT
CGACGGCGCCAAGAGGCCCTTCAGGAACGCCGGCGCGATCCTGGGCCGCCGGAAGATACCAAGCTCCCGCTGGAATCCCA
TCCACAACAGATAAAAGGTACTACATACGCACTCTGATGT---ATGCGCCTGGTTGCTTGCTCGTCTCGTGGTGTGCTGT
GGTCTGAGTAAGCTTGTTTGTCCTTGATTTCAGGCGTAAACGGACTAGATGGCCACGGAGCATC---TAAGCACTGAGGG
CACGCACAGGGATAGGAATTAAGAATGGAGACACGTACATGGAGGATCGAGCTTAGGATC----GTCGCATCTGTGTGTA
AACCCTTTCAATTTTGTAGTTAGTTT---TTTTTTTA-AGTTTATAGGCATTTTTTGTGTGTAAGTTTAGCTATATATAT
AGCTA--GTCGGATGGGAGTAACAGCTGGTTCTTCCCTACATGTTGTCACTTGTTTCATAGCTGC-----TCCTTTGTTG
GATTTAGCA-GCTGCTGTAATATAACTTGATCTGTCGGTGGTACATGGAACAAACCAGTCTCTTCTTTTGATTTTCGATA
GTTCTGGATTGCGGCCTCTTAACAGCTAACTGATCTTCGC-AAAAGAATA------------------------------
--------------------------------------------------------AGTTGCTTGAAATTTATTTATTTA
TTTGCAAAA-----------AAAGAAGAAGAAGTGAAAATACAAGTAAAATATGGACAAAAAGAAAACTTAGTTGTGGGC
CTACTGATGGCAAAATATCTAGGCCGAAATGAAAGCTGCAAAGCGCCTATTAAGCCCTCCTACCA-GAGAGCTCCTGCTC
GACGCTC-------------------------------------------------------------------------
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>SNPs
S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-S--S-----S
---S--S-SS---S---------S---S--S-----------------------SS-------------S-S---S----
---S------------S-----SSSSSSSSSSSSS------------S----SSSSS-S----SSSSSSSSSSSSSSSSS
SS-------------S---SSSS-----------------------------------S---------------------
-----S-S-------------------------------S-----------------------------S----------
------------------------S-------------------------------------------------------
----------------------------------------S------------------------S-SS-----------
------SS-SSS------------S-----------------S---S----SS-------------------S-------
------------------S--S-----------SSSS-SSSSSS--------------------------------S---
-------------------------------------------------------------SSS----------------
-------------------------------------------S-------------------------SS---------
------------------SS---S-----SSSSSSSS-----------------------S-------------------
---------------------------------S----------------------------------------------
--------S----------------------------S--S-S-------------------------------------
----------------S---------------------------------------------------------------
---------------------------------------------------------------------------S----
---------------------------------------------------------S-----------------S-S--
----------------------------------------------------------------SSS-------------
--------------------------------S----SS--------------------------S-----S--------
--------------------------------S---SS-------------------------------------SS---
-----------S---------------------S----------------------------------------------
-------S-S------------------S----------------S-------------------------------S--
----------------------------------------S----S----------------------------------
--------------------------------------------------------------------S-S-S-S-S--S
--S-----S-------------------------------S---------SS-SS-----------S-S-----------
---------S-------------------S-------S----S----------------------S------------S-
--------S------S---S----S---------------------S--------S------------S-------S---
----------S---------------S-S---------------------S----S-S-----S----------------
--S--S----------S-----------------------------------S----S--------------------S-
----S-----S---S----SSSSSSS--SS-----------S----S------SS----------S-------S-SS--S
--SSSSSSSS-SS-SSSSSSSSSSSSSSS-------S-S-----S---------S------------S---S--------
-----------S----SS-----S-------------------------S------S---S------
>forward_994
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--------------TCACCCAGCACCATTCCTTC----------------------------------------------
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>reverse_2069
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--------------------------------------------------------------------GTAGTTGTGGGC
CTGCTGAT------------------------------------------------------------------------
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