>input_sequence_81616
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-----ATGTCGAAGAAAGAATATCAGGACCACCTGGGTCCAATGGAGGAACCGGAAGAACAGGAGGGAGGTCTGTCTGAT
TATGAATCTAGTGATCATTCTACTAATAGTAATTCCGACAAAAATGATGCAGAGGAAGAGTGTCAACAAGCAATTGTGCT
TGATGGTACTAATGTGGAAAGATTAAGGAGG----AGGTGGCTCCCAGGAATCTCTTTACTTATTGTTGGTTCACAGGGT
GTGCTTGTCCAATCCACTGATGACATTACTGGAGATGATGCTGCTCCACGCAATGGTACTGAAGCTCAAAGGGGAGCTGC
TCAAGCAACAAGAAATAGTGCCAGAATTGCTCAAATGGGAGTGGGTCGTGAGACTATGAGAGGGTTGAAGAAAGAGAGCT
GCTAG---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
>chr5A_1_TraesCS5A01G132000
TCAAATACTGCAACTTAAATTCGAATTTGAAACACGATGACTTTATACTGGCACGGTCGACCAAGTCACCTTCACAGAGA
GGGCGGCATGCTGAAGCATTATTTGTTGACAGGCACATCCATGAATGTTTGCTTTGAAGTAGCAACTGCGTTCAAGATGA
TCATTTTTAGAGCCG--TTCTGACCTACCTTGAACTTCAACTGCATCCAAGTATCCATCTTCACAGCAATCACG---CAT
CTTCTT---AAGCCACATGACTCAGCAGTAGTGCCACGAAAGAGAGGAATTTCCTGATCTGATCCGCCGACAAACACAAA
CGAACTGAGCGATAAATTGAATCCATTCTGCACTTTCAATACGAGAACATCTATTGTTGCTTCCACTGCATTGTAAACAC
GTGCTAAAGTGATGTCAACCGCACCACAATTGCCATGAATGCGATGTGTGAATGACACAGAAGGTATGGTTAGGTCACAA
TAATCTGTTGCGCCGTCGATCAATGTTAGATCATCTTC---TTCTTT---CTCTCCTGTCTTGATCCTCATGTCAAATTC
AACTAGAACAGGGGAATTCATTGCAATGCCTCGCTTAGGGCCAGTCATCTCAATGAAAGAACCCTGCAAAACCATTATTA
TT--------------------T---AGTAGCTCCTAGTA-AAAGT--AAGAATTACCTAAAGCGTATACTTGTCTTTCT
AGCCAATTGAAA---AA-GGATCTCAAATACATGGCAGCATAGAATAATTTAAAGTCTTCCCTACAAACATAAATCTGGC
TGAACATGAAACCTAACACTTGATAAATCGCGC-AAGATAATTAACCATAAACTTGCCCAATATATGCAAGGATAACCCC
ATCTTTGTCTAACATCCTCGAAGGCACATGTACGCACATATAAAAGTCCTCAAAGTGGAATCACCATCACCAACGCCGCA
GATCTTTGTTCTTTATTTATTATAAAGGGAAGTTGGTTAATTATTTATGAAAGAGTCGGTTAAGTCCGGGAGTGACAAAA
CAGAGATGTCGAAGAAAGAATATCAGGACCACCTGGGTCCAATGGAGGAACCGGAAGAACAGGAGGGAGGTCTGTCTGAT
TATGAATCTAGTGATCATTCTACTAATAGTAATTCCGACAAAAATGATGCAGAGGAAGAGTGTCAACAAGCAATTGTGCT
TGATGGTACTAATGTGGAAAGATTAAGGAGG----AGGTGGCTCCCAGGAATCTCTTTACTTATTGTTGGTTCACAGGGT
GTGCTTGTCCAATCCACTGATGACATTACTGGAGATGATGCTGCTCCACGCAATGGTACTGAAGCTCAAAGGGGAGCTGC
TCAAGCAACAAGAAATAGTGCCAGAATTGCTCAAATGGGAGTGGGTCGTGAGACTATGAGAGGGTTGAAGAAAGAGAGCT
GCTAGGAGGGTGGCTGAACAGAATTTGGAAGGTAATACTATCTCCACTAAAAACTCCTTTTCTGTTTTATCTGATGATGA
TATCTGTTAAAGCTTTAGAAATAGGGATTGACTGTGATTTACTTCCTCTGGAAACATTTGATATTATGAGAGATCTAGAA
ATAGCTAGGTCAATAACTTGCATCATAAGAACTGTAATGATGAGGTGGAGAAAAATAGTCCAGTAAAATTCCTGGACTGG
GAAAATAAAATGGATGATATTGTTGATGATTTTACCATGGTAGTCTCCAGATCTCTAGAAACACTTTGAAAAAGCAGAAG
AAAATGGAAAAATTACAGAGCAGAAGGAAGAATAATCACATACTCCCTCCGTTCCTAAATATAAGTCTTTTTAGAGATTC
TAATATAGACTATATATGGAGCAAAATGAGTGAATCTACA--CTAAAATACATCTATATTCATCCGTATGTAGTCCATAT
TAAATCTCTACAAGGACTTATATTTAGGAACAGAGGGAGTAAATTTGAATCAAGGTACTGTGCAAACCAGATGTATGTTG
AGAAATAAGAAGACTGATGGGGGCAAAGTTGCTGAATCCCATCCTATGCAATTATGCATGGTGATCTTCCAGGAACTAGA
CCCAGGAGAAAAAAAATAGTAAGTATAAATGATAGGTCTGATATGGAATTGTAGAGGGTGTGGTAAGAAGGGTTTGGCTA
ATTACTTGCAGGAATTATTAAGCAATAATGAAGTGGATTCTATGGGGCTACAGGAAACAATGAAGAGAAATTATTCTGCA
AGTTTCTTCAGGAAGAT-GATCATACTGATCAATTTTCTTGGCACTAGATTCCCTCTGTTGGAACCCTGTAGATTTAACA
TTACTGA------------TACTTCTCAAGGGAGATTTCACATCAAAATTCAGTTTTTTGATGTGAAGCTGCAGATAACA
TTGGGCCGTGATCATTGTCTATGAAGCTGCTCAAGAGGAGAACAAGAGAGATTTTCTAAT
>chr5A_1
TCAAATAGTCCAACTCAAATTTGAATATGGAACACAACAACTTTATGGTATGA---TCGACTAAGTCACCTTCACCCAGA
TAGAGGCATGCTTAAGCATTATTTCTTGATAGGCACATCCATGAATGTTTGCTTTGAACTGACAATACCGTTCTACATCA
TTATAATTAGAGCCT--TTCTGACCTACCTTGAACTTCAAATACATCCAAGTATCCTCCTGTATAGCAATCACA---TGC
CTTCTTGTTAAACCACATGACTCACCAATAATACCGCAAAAGAGCTCAATCTCCTTATGTGACCCACCAATAAACACAAA
CGAGCTGAGAGATAAATCAAATCCACTCTGCATTTTTGATATGACAACATCTATTGTGGCCTCCACTGCATCAGGAACTT
GTGCTAAAGTGATGTCAACTGCACCACAATTACCATTAATGCGCTCTGTGAATGGACGAAAAGGTGCATTTGCTTTGCTG
TACTCTACTACACCGTCGATAAGTTGCAGATCATCATC---TTCTTTTTGCCCTCCTGTCTTGATCCTCATGTCAAACTC
AACTAGAACATCACCGAGCATATTAATGCCCCTCTTAGGGCCAGTCATCTCAATGAGAGAACCCTGCAAAACAACTATTA
ATTATTACTCCAGAGTAATTGCT---AGTAGCACATAGTA-AAAAGTAAAGAGTAATCTAAAGTGTATATTCTTATTTCG
AGCCAACTGACAATGAT-GAATCTCAAATAAATGATGGCTTAAATTCTAAACCAAGAAACAAACGTAAGAC------GAT
TGCACATGAAACTTAATGTTCAATAAATCATCCAAAGATAATTAACCATAAACTTGCCTAATGGATGCAAGGATAACAGC
ATATGTGTATGACATCCTC-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------
>chr5B_1
TCAAATACTGCAACTTAAATTCGAATTTGAAACACGATGACTTTATGCTGGCACGGTCGACCAAGTCACCTTCACAGAGA
GGGCGGCATGCTGAAGCACTATTTGTTGACAGGCACATCCATGAATGTTTGCTTTGAAGTAGCAACTGCGTTCAAGATGA
TCATTTTTAGAGCCG--TTCTGACTTACCTTGAACTTCAACTGCATCCAAGTATCCATCTTTACAGCAATCACG---TAT
CTTCTT---AAGCCACATGACTCAGCAGTAGTGCCACGAAAGAGCGGAATTTCCTGATCTGATCCGCCGACAAGCACAAA
CGAACTGAGCGATAAATTGAATCCATTCTGCACTTTCAATATGAGGACATCTATTGTGGCTTCCACTGCATTGTAAATGC
GTGCTAAAGTGATGTCAACCGCACCACAATCGCCATTAATGCGATTTGTGAATGACACAGAAGGTATGGTTAGGTTACAA
TAATCTGTTGCGCCGTCGATCAATGTTAGATCATCTTC---TTCTTT---ATCTCCTGTCTTGATCCTCATGTCAAATTC
AACTAGAACAGGGGAATTCATTGCGATGCCTCGCTTAGGGCCAGTCATCTCAATGAGAGAACCCTGCAAAACCATTATTA
TT--------------------T---AGTAGCTCCTAGTA-AAAGT--AAGAATTACCTAAAGCGTATACTTGTCTTTCT
AGCCAATTGTAA---AA-GGATCTCAAATACATGGCAGCATAGAATAACTTAAAGTCTTCCCTACAAACATAAATCTGGC
TGAACATGAAACTTAACACTTGAGAAATCGCGCAAAGATAATTAACCATAAACTTGCCCAATATATGCAAGGATAACCCC
ATCTTTCTCTAACATCCTCGAAGGCACATGTATGCACATATAAAAATCCTCAAAGTGGAACCACCATCACCAACGCCGCA
GATCTTTGTTCTTTATT-ATTATAAAGGGAAGTTGGTTAATTCTTTATGAAAGAATCGGTTAAGTCCAGGAGTGACAAAA
CAGAGATGTGGAAGAAAGAATATCAGGACCACCTGGGCCCAATGGAGGAACCAGAAGAACAGGAGGGAGGTCTGTCTGAT
CATGAATCTAGTGATCATTCTACTAATAGTAATTCCGACAAAAATGATGCAGAGGAAGAGTGTGAACAAGCAATTGTGCT
TGATGGTACTAATGTGGAAAGATTAAGGAGGGAGGAGGTGGCTCCCAGGAATCTCTTTACTTATTGTTGGTTCACAGGAT
GTGCTTGTCCAATCCACTGATGATATTACTGGAGATGATGCTGCTCCACGCAATGGTACTGAAGCTCAAAGGGGAGTTGC
TCAAGCAACAAGAAAGAGTGCCAGAATTGCTCAAATGGGAGTGGGTCGTGAGACTATGAGAGGGTTGAAGACAGAGAGCT
GCTAGGAGGGTGGCTGAACAGAATTTGGAAGGTAATACTATCTCCACTAAAAATTCCTTTTCTGTTTTATCTGATGATGA
TATCTGTTAAAGCTTTAGAAATAGGGATTGACCGTGATTTACTTCCTCTGGAAACATTTGATACTATGAGAGATCTAGAA
ATAGCTAGGTCAATAACTTGCATCATAAGAGTTGTAATGATGAGGTGGAGAAAAATAGTCCAGTAAAATTCCTGGACTGG
GAAAATAAAATGGATGATATTGTTGGTGATTTTACCGTGGTAGTCTCTAGATCTCTAGAAACACTTTGAAAAAGCAGAAG
AAAATGGAAAAATTACAGAGCAGAAGGAAGAATAATCACATACTCCCTCCGTTCCTAAATATAAGTCTTTTTAGAGATTC
TAATATAGACTATATACGGAGCGAAATGAGTGAATCTACACTCTAAAATACGTCTATATTCATCCGTATGTAGTCCATAT
TAAATCCCTACAAGGACTTATATTTAGGAACGGAGGGAGTACATTTGAATCAAGGTACTGTGCAAACCAGATGTATGGTG
AGAAATAAGAAAACTGATGGGGGGGAAGTTGCTGAATCCCATTCTATGCAATTATGCATGGTGATCTTCCAGGAACTAGA
CCCAGGAGAAAAAAAATAGTAAGTATAAATGATAGGTCTGATATGGAATTGTAGAGGGTGTGGTAAGAAGGGTTTGGCTA
ATTACTTGCAGGAATTATTAAGCAATAATGAAGTGGATTCTATGGGGCTACAGGAAACAATGAAGAAAAATTATTCTGCA
AGTTTCTTCGGGAAGATTGATCATACTGCTCAATTTTCTTGGCACTAGATTCCCTCTGTTGGAATCCTGTAGATTTAACT
ATAGATTTACCATTACTGGTACTTCTAAAGGGAGATTTCACATCAAAATTCAGTTTTTTGATGTGAAGCTGCAGATAACA
TTGGGCCGTGATCATTGTCTATGAAGCTGCTCAAGAGGAGAACAAGAGAGATTTTCTAAT
>chr5B_1
TCAAATAGTCCAACTCAAATTTGAATATGGAACAC--CAACTTTATGGTATGA---TCGACCAACTCACCTTCACCAAGA
TAGAGGCATGCTTAAGCATTATTTCTTGATAGTCACATCCATGAATGTTTGCTTTGAACTGACAATACCGTTCTACATCA
TTATAATTAGAGCCT--TTCGGACCTACCTTTAACTTCAAATACATCCAAGTCTCCTCCTGTACAGCAATCGCATGCCTT
CTTGTT---AAACCACACGACTCACCAATAATATCACAAAGGAGCTCAATCTCCTTATGTGACCCACCGATAAACACAAA
CGAGCTGAGAGATAAATTGAATCCTCTCTGCATTTTTGATATTATAACATCTATTGTGGCCTCCACTGCATCAGGAACGC
GTGCTAAAGTGATGTCAACCGCACCACAATTACCATTAATGCGCTCTGTGAATTGACGAAAAGGTGCATTTGCTTTGCTG
TACTCTACTACACCGTCGATAAGTTGCAGATCATTATC---TTCTTTTTGCCCTCCTGTCTTGATCCTCATGTCAAACTC
AACTAGAACATCACCGAGCATATTAATGCCCCTCTTAGGGCCTGTCATCTCAATGAGAGAACCCTGCGAAACAACTATTA
ATTATTT----------ATTGCT---AGTAGCTCATAGTA-AAAACTAAAGAGTTATCTAAAGTGCATATTCTTATTTGG
AGCCAACTGACAATGAT-GAATCTCAAATAAATGATGGCTTAAATTCCAAACCCACAAACAAACGTAAGTC------GAT
TGCACATGAAACTTAATGTTCTATAAATCATCCAAAGATAATTAACCATAAACTTGCCTAATGTATGCAAGGATAACAAC
ATATGTGTATGACATCCTCCAAACACAAGTA-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
>chr3D_1
TCAAATAATGAAACAAAAATTCGAATTTGAAACAAGACAACTTCATGGCATAG---CCGACCAAGTCACCTTTAGCGAGA
TAGAGGCATGCTCAAGCAGTATTTGTCAACGCGCAAATTCATGGAGGTTTGCTTTGAAACGACAATGACGTTCAC-----
-CATATTTAGACCCT--TCCTGGCCTACCTTGAGCTTCAAATGCATCCAACTATCCATCTCTACAGCAATCACA---TAT
CTTCTTGTTATGACACATGACTCACCAATAATGTCACACAGGAGCTCGATTCCCTGATATGACCCACCTACAAACACATA
CAAACTGAGAGATAAATTGAATCCACTCCGCACTTCTGATACGATAACATCTATTGTGGCCTCCACTGCATTGACAACGT
GTGCTAAAGTGATGTCAACCGCACCACAATCGCCATTAATCCGACTCGTGAATGGATGAGAAGGTGTGGTTACTTCGCAG
AAGTCTGTTGCACCATCAATTAATTGTAGATCATATTC---TTCTT---GCTCCCCTTTCTTGATCCTCATGTCATACTC
AACTAGAACAGGGCTGGTCATTGTGATGCCCCTCTTAGGGCCAGTCATCTCAATGAGAGATCCCTGCAAAACTATCATTA
GT--------------------TGCGAGTAGCTCATCATTAGAAGT--A-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------------
>chr5A_17
AAAGTT---------------CGAATACGAAACGAGTGATTTACCTTT--GCAAGTTCGACCAAGTCACCTTCACTGAGA
TAGAGGCAAGCTCAAGCATGATTTGCTGATAGTCGTGCCCATGCTTTTTTGCTTTGAAGGAACAATGGTGATCAA---GA
TCATTTTTACAACTA--TTCTGGCCTACCTTGAACTTCAAATACATCAAAGTATCCTTCTTTACAGCAATCACA---TAT
CTTCTT---AAACCACATGACTCAACAACACTGCCACGAAAGAGTTGAATCTCATGTAAACCATTCATTAGGAAAACACA
CGAACTGAGAGATAAATCAAATCCACACTGCACTTTCGATATGACAACATCTATTGTGGCCTCAAATGCCCAACGAACGA
GGGCTAAAGTGATGTCAACCGCACCACAATCTCCATTAATCCGATGCGTGAATGGATACTCAGGTGTGACTAGATCATGG
TACTCCATTGCACCATCAATTAGTTGTAGATCATCTTC---TT------GCTTTCCTTTCTTGATCCTCATGTCAAACTC
AACTAGAGCAGGGGCTACCATTGCGATGCCTCTCTTAGGGCCAGTCATCTCAATAAGAGAACCCTGTAAACCTATTATTA
TT--------------------T---AGTAGCTCCTCATGGAAAGT--AAGAAATATGTGAAGCATATGCTCTACGTTGT
GT-CAATTGAC----AA-AGATCTCAAATAAATGATAGCATAAAAT----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------
>chr5B_17
AAAGTT---------------GGAATATGAAACGAGTGATTTACCTTT--GCAAGTTCGACCAAGTCACCTTCACTGAGA
TAGAGGCAAGCTCAAGCACGATTTGCTGATAGTCGTACCCATGTTTTTTTGCTTTGAAAGAACAATGATGATCAA---GA
TCATTTTTACAACTA--TTTTGACCTACCTTGAACTTCAAATGCATCAAAGTATCCTTTTTTACAGCAATCACA---TAT
CTTCTT---AAGCCACATGACTCAACAAAACTGCCACGAAAGAGTTGAATCTCATGTAATCCATTCATAACGACAACACA
CGAACTGAGAGATAAATCAAATCCACACTGCACTTTTGATATGACAACATCTATTGTGGCCTCAAATGCCCAACGAACGA
GGGCTAAAGTGATGTCAACCGCACCACAATCTCCATTAATCCGATGCGTGAATGGATACTCAGGTGTGACTAGATCATGG
TACTCCATTGCACCATCAATTAGTTGTAGATCATCTTC---TT------GCTTTCCTTTCTTGATCCTCATGTCAAACTC
AACTAGAGCAGGGGCTACCATTGTGATGCCTCTCTTAGGGCCAGTCATCTCAATAAGAGAACCCTGTAAACCTATTATTA
TT--------------------T---AGTAGCTCCTCATGGAAAGT--AAGAAATATGTGAAGCATATGCTCTACTTTAT
GT-CAATTGAC----AACAGATGTCAAATAAATGATAGCATAAAAT----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
>chr5D_17
AAAGTT---------------GGAATATGAAACGAGTGATTTACCTTT--GCAAGTTCGACCAAGTCACCTTCACTGAGA
TAGAGGCAAGCTCAAGCATTATTTGCTGATAGTCGTACCCATGTTTTTTTGCTTTGAAAAAACAATGATGATCAA---GA
TCATTTTTACAACTA--TTCTGACCTACCTTGAACTTCAAATGCATCAAAGTATCCTCTTTTACAGCAATCACA---TAT
CTTCTT---AAGCCACATGACTCAACAACACTGCCACGAAAGAGTTGAATCTCATGTAATCCATTCCTAAGGACAACACA
CGAACTGAGAGATAAATCAAATCCACACTGCACTTTTGATATGACAACATCTATTGTGGCCTCAAATGCCCAACGAACGA
GGGCTAAAGTGATGTCAACCGCACCACAATCTCCATTAATCCGATGCGTGAATGGATACTCAGGTGTGACTAGATCATGG
TACTCCATTGCACCATCAATTAGTTGTAGATCATCTTC---TT------GCTTTCCTTTCTTGATCCTCATGTCAAACTC
AACTAGAGCAGGGGCTACCATTGTGATGCCTCTCTTAGGGCCAGTCATCTCAATAAGAGAACCCTGTAAACCTATTATTA
TT--------------------T---AGTAGCTCCTCATGGAAAGT--AAGAAATATGTGAAGCATATGCTCTACTTTAT
GT-CAATTGAC----AA-AGATCTCAAATAAATG----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
>chr5D_17
AAAGTT---------------GGAATATGAAACGAGTGATTTACCTTT--GCAAGTTCGACCAAGTCACCTTCACTGAGA
TAGAGGCAAGCTCAAGCATGATTTGCTGATAGTCGTACCCATGTTTTTTTGCTTTGAAAAAACAATGATGATCAA---GA
TCATTTTTACAACTA--TTCTGACCTACCTTGAACTTCAAATGCATCAAAGTATCCTTTTTTACAGCAATCACA---TAT
CTTCTT---AAGCCACATGACTCAACAACACTGCCACGAAAGAGTTGAATCTCATGTAATCCATTCCTAAGGACAACACA
CGAACTGAGAGATAAATCAAATCCACACTGCACTTTTGATATGACAACATCTATTGTGGCCTCAAATGCCCAACGAACGA
GGGCTAAAGTGATGTCAACCGCACCACAATCTCCATTAATCCGATGCGTGAATGGATACTCAGGTGTGACTAGATCATGG
TACTCCATTGCACCATCAATTAGTTGTAGATCATCTTC---TT------GCTTTCCTTTCTTGATCCTCATGTCGAACTC
AACTAGAGCAGGGGCTACCATTGTGATGCCTCTCTTAGGGCCAGTCATCTCAATAAGAGAACCCTGTAAACCTATTATTA
TT--------------------T---AGTAGCTCCTCATGGAAAGT--AAGAAATATGTGAAGCATATGCTCTACTTTAT
GT-CAATTGAC----AA-AGATCTCAAATAAATG----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
>chr5D_17
AAAGTT---------------CGAATACGAAACGAGTGATTTACCTTT--GCAAGTTCGACCAAGTCACCTTCACTGAGA
TAGAGGCAAGCTCAAGCATGATTTGCTGATAGTCGTGCCCATGCTTTTTTGCTTTGAAGGAACAATGGTGATCAA---GA
TCATTTTTACAACTA--TTCCGGCCTAGCTTGAACTTCAAATACATCAAAGTATCCTTCTTTACAGCAATCACA---TAT
CTTCTT---AAACCACATGACTCAACAACACTGCCACGAAAGAGTTGAATCCCATGTAAACCATTCATAAGGAAAACACA
CGAACTGAGAGATAAATCAAATCCACACTGCACTTTCGATATGACAACATCTATTGTGGCCTCAAATGCCCAACGAACGA
GGGCTAAAGTGATGTCAACCGCACCACAATCGCCATTAATCTGATGCGTGAATGGATACTCAGGTGTGACTAGATCATGG
TACTCCATTGCACCATCAATTAGTTGTAGATCATCTTC---TT------GCTTTCCTTTCTTGATCCTCATGTCAAACTC
AACTAGAGCAGGGGCTACCATTGTGATGCCTCTCTTAGGGTCAGTCATCTCAATAAGAGAACCCTGTAAACCTATTATTA
TT--------------------T---AGTAGCTCCTCATGGAAAGT--AAGAAATATGTGAAGCATATGCTCTACTTTGT
GT-CAACTGAC----AA-AGATCTCAAATAAATGACAGCATAAAAT----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
>chr5D_17
AAAGTT---------------CGAATACGAAACGAGTGATTTACCTTT--GCAAGTTCGACCAAGTCACCTTCACTGAGA
TAGAGGCAAGCTCAAGCATGATTTGCTGATAGTCGTGCCCATGCTTTTTTGCTTTGAAGGAACAATGGTGATCAA---GA
TCATTTTTACAACTA--TTCCGGCCTAGCTTGAACTTCAAATACATCAAAGTATCCTTCTTTACAGCAATCACA---TAT
CTTCTT---AAACCACATGACTCAACAACACTGCCACCAAAGAGTTGAATCTCATGTAAACCATTCATAAGGAAAACACA
CGAACTGAGAGATAAATCAAATCCACACTGCACTTTCGATATGACAACATCTATTGTGGCCTCAAATGCCCAACGAACAA
GGGCTAAAGTGATGTCAACCGCACCACAATCGCCATTAATCTGATGCGTGAATGGATACTCAGGTGTGACTAGATCATGG
TACTCCATTGCACCATCAATTAGTTGTAGATCATCTTC---TT------GCTTTCCTTTCTTGATCCTCATGTCAAACTC
AACTAGAGCAGGGGCTACCATTGTGATGCCTCTCTTAGGGTCAGTCATCTCAATAAGAGAACCCTGTAAACCTATTATTA
TT--------------------T---AGTAGCTCCTCATGGAAAGT--AAGAAATATGTGAAGCATATGCTCTACTTTGT
GT-CAACTGAC----AA-AGATCTCAAATAAATGATAGCATAAAAT----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
>chr3A_59
----------------------------------------------------------GACCAAGTCACCTTTATTGAGA
TTGAGACAGGCTCAATCATTATTAGCTTACAGGCATCTTCATGCGTGCTTGCTCTGAAGTAACAGTAGCATCCAG---GA
TCAACATTTTCATAGCCTTTTGACAATATTTGAATTTCAAATACATCCGGGTATCCTTTTCTACGGCAATCCCA---GAT
CTTCTT---ATGCCACATGACTCGCTAATAGTGTCGTGAAAGAGCAGAATTCTGTGAGGTGACCCACGGATAAACACAAA
AGAAGAGAGAGAGAGATTGAATCCACTCTGCACTTATGATATGGCAACCTCTATTATTGCCTCCACTGCGTTGTACAACC
TTGCTAAAGTGATGTCAACCGCACCACAATCACCCTGAATGCAATTCACGAATGGCGTGCAAGGCTTGGTTAGATTGCAG
TGGTCTGTTACACCATCAATCAACTGTCGATCATCTTCTTTTT------GCTCTCCTTTCTTAATCCTTATGTCAAACTC
TATTTGAAAAGAGGAAATTATTGAGATGCCTTGCTTAGGTCCAGG-ATCTCAATGAGAGAACCCTGCAAGACTATTATAT
TTA-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
>SNPs
----------------------------------------------S---------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------S------------------
--------------------------------------------S-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
--------------------------------------------------------------------------------
------------------------------------------------S-------------------------------
------------S-------------------------------------------------------------------
--------------------------------S------------S--------------S-------------------
-----------------S------------------------S-----------S------------S------------
---------S---------------------------S--------------S---------------------------
S--------------------------------------------------------------S----------------
------------------------------------------------------------------------------S-
-----------------------S----------------------------------------------------S---
---------------S-------------------------------------------------------S--------
-----------------------------------------------------S--------------------------
--------------------------------S------------------------------S----------------
------------------------------SS------------------------------------------------
-------------------------S----------S----------S--------------------------------
--------------------------------------------------------------------------------
----------------S-----S----------------------------S----------------------------
------S------------------------S---------S-----------------------------------S--
-----------S-----------SS-----------------S-------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------S-------------
---------S------------------S-----------------------------------S--------------S
S--SSSS-------------------S-----------------------------------------------------
------------------------------------------------------------
>forward_285
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------GCAGTAGTGCCACGAAAGAGA-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
>reverse_1432
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------AAGAGAGCT
GCTAGGAGGGT---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
>forward_1121
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------AGGAGGGAGGTCTGTCTGAT
T-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
>reverse_2012
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------GACTGATGGGGGCAAAGTTG-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
