>input_sequence_81613
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------ATGTCGTACTACGACC
GGCGTGGGGAGTCGTCGGTGCTGGAGGCGTTCACGCTGTCGCCGCTGCCTTACCCGGTGATCCTGATCCTGATGATGGTG
ACGCTGCTGCTGGGGGCGTCGTGGTTCTTCTCCTACGAGGAGTTCATGGAGGAGGCGTCGGAGCAGTTCAGCTGGTTCCT
GCTGGGCGTGCCCATCGCGCTCGTGCTCCTCATCCGCTGGATCTCCTCCGTCGACACCTTCGAGGGTTACTTCGGGTTCT
ACCCCACCGAGAGCCGCTGGCGGGGCTACCCGGCCGCGCCCTCCGAGGGCAGCTCCCCCTGGGGCGTCGCCATGGTCGTC
GTCCTCCTCCTCGTCCTCGCCAGTTTCCACTCCACCTTCCAGGACATGTGGAAGGCTTGA--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------
>chr4D_1_TraesCS4D01G223900
TAGTCTTCCCTTCACACAAAGTTGCGCGCTCGCACCGCTCGCTCCTCCTCTGCCTCTAGACCAATCATCACAACCGCTTG
CTACAAGCCAGGGACAAGGTGTGCAGCTGCAAAGGAGGGAACGAATGTTACAAGGTGCTAGGCGGCTACGCTTGGCGCTT
GGTGTTGCAAGTCGATGCTGCAAGAGCGACAATGTCGGGTTGTGAGCGGCAATCATCCTATGCTGCCACCATGGTGATGT
TGTGACGATACGGTGAGCGTATGTGCATTCGGTGCTACGACAACATGGTCTGGAGAGACAAAGAAAGATTACACAATCTG
GGCCACAATTGTGTTGCTTTAGAAGATCCGGCGCGGCGGCCAGTCT---CACTTTCCCTCACCTTTAGGCCTAAATCAAG
GCCGAACCTTAAGCCTGAATTATTGGACCGTGGAATAATACTTGTCTACTTGAATGGACAGTCCAGAGAGCTCCGCTTTT
AGATCCCGACTAGAGTATCGGACAGTACGTACTTGCAC------------------------------------CTTCAC
CTCATCAA------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TTGCTACTCTACACATATCAGCATCACAAGTTATTTGCCAAGAAAGAGAGATTATCATCGTG
TTCCCAAACATACATCATGTTACACGTAAAGCTAATGGTGATAGCTCTGCTTGCGAACCTCTCCCCGCCACGCGTACACC
ACCACCCGCAGCACAAAGACTTTTT-GGGGTGCTGTTTTGCTGACGGGGACGTCCACTGGGAGCTAGCTCATCAGCTGTG
ATACCTGAAGCAGACAGCGACAT----------------------GGTCTAGGTGAATGAATAATTTAGCCACCA-AAGT
CCACAAGCCCACAGACTCCACTCCACGCACGAACTTCCAATCCATCCGTCTCCTC-----------CAGGCCACAGCCGC
AACACG-------CTACTAGCAGTTACGCGCCCCT---------ATCCCCCCACCTCTTCCTTCCACTTTCCCCACCTCG
CAGGCCAAGCAAACG----CCAGGCGACGCAAGGCAAGGAAGCGGCCCAGCGGGCGAGGCAGCCATGTCGTACTACGACC
GGCGTGGGGAGTCGTCGGTGCTGGAGGCGTTCACGCTGTCGCCGCTGCCTTACCCGGTGATCCTGATCCTGATGATGGTG
ACGCTGCTGCTGGGGGCGTCGTGGTTCTTCTCCTACGAGGAGTTCATGGAGGAGGCGTCGGAGCAGTTCAGCTGGTTCCT
GCTGGGCGTGCCCATCGCGCTCGTGCTCCTCATCCGCTGGATCTCCTCCGTCGACACCTTCGAGGGTTACTTCGGGTTCT
ACCCCACCGAGAGCCGCTGGCGGGGCTACCCGGCCGCGCCCTCCGAGGGCAGCTCCCCCTGGGGCGTCGCCATGGTCGTC
GTCCTCCTCCTCGTCCTCGCCAGTTTCCACTCCACCTTCCAGGACATGTGGAAGGCTTGATGGAATGATCGGTGCTCCGA
TCCATACCTCGTATGTACGTGTATGTGTGTATGTATGTATGTGATTCCATCGTATCGATCTGTGGTACACCTATGAAT--
--GATTGTTG---CTTCCAGGCGGTTGCTGCACCTGCACGTATGTGTGCCTTGCTTTTCCTCCTGTATATAGAC-----G
A---AGGTTATATTCTGCTAGCTG--AAAAACTATAGAGCTTGAGTGTCACTCCTCTGTACTGGTCCTTGTTCTGTGTTT
TAC----TGAATCAACAGGTTTCTGTGGGAAAATTTACTCTA------------------------TTCTGTCGAAATAT
TTGCCATGTCCTCTGTCGAAATATTTGCCATGTCCTTCGTTCTTCATCAACATACATGTTAAAG----------------
------ACTGGGTTGCAGTTGGTGGGAGCAATCATAGATAGAAGCTGCACAAAGGAAGATACGATCAGTGGGACACAGCG
GGTAGATGAAACGCGGTAGTAGGAGCATAGACTGGAGAGTTCT-GGACGCGGGCAATCATGACACTTTGTTCGTTCTCGT
ATTATCCCTTTGCGAGCGTATCTCGGCCCATAGCCAGAATCTTGTCCTCTCGTCCACCTGGTGCTTGCTGGTGGTGCTAC
TCTAG--------GAAGGAAGATTGCCGACGCTACTGTGACCAACATGGGCAAAGATAGGGAGAGGTTGTTGGTCCGTCA
ATGGATATCACTTTGTACGTATGTGCAATTCTGCATGATCCACAGAAACCTTATTTGACAGGAGAAAGATCCCGAAAAAC
CTGCAGGTTCCAGTGGGAACCTGTACTCG-----TGCTTACTTTTCCATCATCTTCGAACGGCGCTGCATCAGTGTTTAT
GTTAATTATAAGGTACGCTTTTGAAGAGGGGGATAAAATTACTGGATCGTTGCCGGTGCGTTTGTTGTTCCCCCATGACA
GTGTCGGCCACAAAGATCGCAAGAAA--TTAAAGTAA---GCGAATCTCTCGCCCCGGAAGTGCATCCTCTTT-GGGATG
GACACGATGCATTCGGCTTTGCTGGAT
>chr4A_108
--------------------------------------------------------------------------------
---------------------------TGCAAAGGAGGGAATGAATGTTACAAGGTGCTAGGCGGCCACGCTTGGCGCTT
GGAGCTGCAAGTCGATGCTGCAAGAGCGACAATGTCGGGTTGTGTGCGGCAATCAT-CTATGCTGCCACCATGGTGATGT
TGTGACGGTACGGTAAGGGTACGTGCATTCAGTACTACAACGACATGATCTGGAGAGACAAAGAAAGATTACACAATCTG
GGCTACAACCGTGTTGCTTTAGAAGATCCGGCGCGGCGGTCAGTCTAATCACTTCCCCTCACTTT-AGGCCTAAATCAAG
GCCGAGCCTTAAGCCTGAATTATTGG-CCGTGGAATGATCCTTGTCGACTTGAATGGACAGTCCAGAAAGCTTCACTTTT
AGATTCCGACTAGACTAAAGTATTGGACAGACCATTCTATGTACCGTCACCTTCTCACTTCACCAAGTATGTGGCTTCAT
CTCATCAATTAGGGCATGTACAATAGTGACATATGAATACACATGCCTCATAACAAAAAATAGTTTGACACATTTACATT
TGTTTTTTCTCCTCAATGCAAGCTATCATTAGTGGGCCTCATCAATAAATAGAAAATAAAGACTCTAGTACATATGCATC
CGTCTCCCGCTGAGGATCCCGCTTCTATGTCCAAACCCACTTTATTTGATATCCGATCCTACATGGCATCACCCTAAGAT
TATGGGTTGGCCATGCCTTTACTACTCTGCACATATCAGCATCACAAGTTATACTATGCC-AAGAAAGAATATCATCGTG
TTCCCAAACATACATCATGCTACACGTAAAGCTAATGATGATAGCTCTGCTTCCGAACCTCTCCCCGCCACGCGTACACC
ACCACCCGCAGCACAAAGACTTTTTTGAGGTGCTGTTTTGCTGACGGGGACGTCCACCGGGAGCTCATCGATCAGCTGTG
ATACCTGAAGCAGACAGCGCCAATCCTGGGTGCT----------GGGTCTAGG----TGAATAATTTAGCCACCGGAAGT
CCACAAGCCCACAGGCTCCACTCCACGCACGAACTTCCAATCCATCCGTCTCCTCGCCACGCGCGCCAGGCCACAGCCGC
AACACGCTCGCTACTACTAGCAGTTACGCGCCCCT---------ATCCCCCCACCTCTCCCTTCCACTTTCCCCACCTCG
CAGGCCAAGCAAACGCACGCCAGGCGAGGCAGCACAAAGAAGCA---------GCGAGGCAGCCATGTCGTACTACGACC
GGCGCGGGGAGTCGTCGGTGCTGGAGGCGTTCACGCTGTCGCCGCTGCCGTACCCGGTGATCCTGATCCTGATGATGGTG
ACGCTGCTGCTGGGGGCGTCGTGGTTCTTCTCCTACGAGGAGTTCATGGAGGAGGCGTCGGAGCAGTTCAGCTGGTTCCT
GCTGGGCGTGCCCATCGCGCTCGTCCTCCTCATCCGCTGGATCTCCTCCGTCGACACCTTCGAGGGCTACTTCGGCTTCT
ACCCCACCGAGAGCCGCTGGCGGGGCTACCCGGCCGCGCCCTCCGAGGGCAGCTCCCCCTGGGGCGTCGCCATGGTCGTC
CTCCTCCTCCTCGTCCTCGCCAGCTTCCACTCCACCTTCCAGGACATGTGGAAGGCTTGATGGAATGATCGGTTCTCCGA
TCCATACCTCGTAC------GTATGTGTGTATGTATGT----GATTCCATCGTGTCGATCTGTAGTACGCCTATGAATGA
TTGATTGTTG---CTTCCAGGCGGTTGCTGCACCTGCACGTATGTATGCCTTGCTTTTCCTCCTGTACTGTACATAGATG
ATGGAGGTTATATTCTGCTAGTAGCTAAAAACTATAGAGCTTGAGTGTTACCCCTCTGTACTGGTTCTTGTTCTGTGTCT
TACTGAATGAATCAATAGGTTTCTGTTGGAAAATTTACTCTATCCACTGCACCTTATAATCAATCATTCTGT--------
----------------TGAAATATTTG--ATGTCCTTCGTTCTTCATCAACATACATGTTTCTTTTTTCTTTTCTTTTTT
TCTGAAACTGGGTTGCAGTTGGTGGGAGCAATCATAGATAGAAGCTGCACAAAGGAAGATACGATCAGCGGGACACAGCG
GGTAGATGAAACGCGATAGTAGGAGCATAGACTGGAGGGTTCTGGGACGCGGGCAATCATGACACTT-GTTCGTTCTGGT
ATTATCCCTTTGCGAACGGATCTCGGCCCATGGCCAGAATCTTGTCCTCTCGTCCACCTGGTGCTTGCTGGTGGTG----
-CTAGGACGGAAGGAAGGAAGATTGCCGACGCCACTGTGACCAACATGGGCAAAGATAGGGAGAGGTTGTTGGCCCGTCA
ATGGATATCACTTTGTACATATGTGCAATTCTGCATGATCCACAGAAACCTTATTCGACAGGAGAAAGATCCCGAAAAAC
CTGCAGGTTCCGGTGGGAAACTGTACTCGGGTCGTGGCTATTTTCCCGTCATCTTCGAACGGCGCTGCATCATTAAT---
--------TAAGGCGGGCTTTTGGAGAGGGGGAGAAAATTACTCGATCTTTGCCGGTGCGGTTGTTGTTCCG--ACGACG
GTGTCGGCCACGAAGATAGCAAAAAAAATTAAAGTAA---GCGAATCTCTAGCCCCGGAAGTGCATCCTCT-T-GGCAAG
GACACGGTGTATTCGGCTTTGCTAGAT
>chr4B_516
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------CTTCAC
CTCATCAG------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TTACTACTCTGCACATATCAGCATCACAAGTTATACTATGCC-AAGAAAGAATATCATCGTG
CTCCCAAACATACATCATGGTACACGTAAAGCTAATGATAATAGGTCTGTTTCTGAACCTCTCTCCGCCACGCGTACACC
ACCACCCGCAGCACAAAGACTTTT-TGGGGTGCTGTTTTGCTGATGGGGACGTCCACTGGGAGCTAGCTCATCAGCTGTG
ATACCTGAAGCAGACAGCGTCAATCCTCCATAATCTCGTGGCACGGGTCTAGGTGAATGAATAATTTAGCCAGCA-AAGT
CCACAAGCCCAGAGACTTCACTCCTCGCACGAACTTTCAATCTATCCG--TCCTCGCGACGCGCGCCAGGCCACAGCCGC
AACACG-------CTACTAGCAGTTACGCGCCCCTCCTACCCCTATCCCCCCACCTCGTCCTTCCACTTTCCCCACCTCT
CAGGCCAAGCAAACGCACACCAGGCGAGGCAACGCAAAGAAGCAGGC---------AGGCAGCCATGTCGTACTACGACC
GGCGCGGGGAGTCGTCGGTGCTGGAGGCGTTCACGCTGTCGCCGCTGCCGTACCCGGTGATCCTGATCCTGATGATGGTG
ACGCTGCTGCTGGGGGCGTCGTGGTTCTTCTCGTACGAGGACTTCATGGAGGAGGCGTCGGAGCAGTTCAGCTGGTTCCT
GCTGGGCGTGCCCATCGCGCTCGTCCTCCTCATCCGCTGGATCTCCTCCGTCGACACCTTCGAGGGCTACTTCGGGTTCT
ACCCCACCGAGAGCCGCTGGAGGGGGTACCCGGCCGCGCCCTCCGAGGGCAGCTCCCCCTGGGGCGTCGCCATGGTCGTC
GTCCTCCTGCTCCTCCTCGCCAGCTTCCACTCCACCTTCCAGGACATGTGGAAGCCTTGATGGAATGATCGATGCTCCGA
TCCATACCTCGTATGTACGTGTATGTGTGTATGTATGTA----ATTCCATCGTATCGATCTGTAGTACACCTACGAATGA
TTGTTGCTTCCACCTTCCAGGCGGTTGCTGCACCTGCACGTATGTGTGCCTTGCTTTTCCTCCTGTACTGTACATAGATG
A---AGGTTATATTCTGCTAGCTG--AAAAACTATAGAGCTTGAGTGTCACTCCTCTGTACTGGTTCTTGTTCTGTGTTT
TACTGAAT----CAACAGGTTTCTGTGGGAAAGTTTACTCTA------------------------TTCTGT--------
----------------CGAAATATTTGCCATGTCCTTCGTTCTTCATCAACATACATGTTTTTTTTAACTGGATG-----
--------------GCAGTTGGTGGGAGCAATCATAGATAGAAGCTGCACAAAGGAA-----------------------
--------------GATAGTAGGAGCGTAGACTGGAGAGTTCTGGGACGCGGGCAATCATGACACTT-GTTCGTTCTGGT
ATTATCCCTTTGTGAGCGTATCTCGGCCCGTAGCCAGAATCTTGTCCTCTCGTCCACCTGGTGCTTGCTGGTGGTG----
-CTAG--------GAAGGAAGATTGCCGACGCCACTGTGACCAACATGGGCAAAGATAGGGAGAGGTTGTTGGTCTGTCA
ATGGATATCACTT-GTACGTATGTGCAATTCTGCATGATCCACAGAAACCTTATTAGACAGGAGAAAGATCCCGAAAAAC
CTGCAGGTTCCAGTGGGAACCTGTACTCGGGTAGTGCCTACTTTTCCACCATCTTCGAACGCCGCTGCATCATTAAT---
--------TAAGGCGGGCTTTTGAAGA-GGGGAGAAAATTACTCGATCGCTGACGGTGCGGTTGTTGTTCCG--ATGACA
GTGTCGGCCACGAAGATCACAAGAAA--TTAAAGTATGTGGCGAATCTCTAGCCCCGGAAGTGCATCCTCT-TTGGCAAG
GACACGATGCATTCGGCTTTGCTGGAT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S------------------------S-------------
--S-S---------------------------------------S-----------S-----------------------
-------S------S--S---S--------S--S----S--S-----S--------------------------------
---S----SS-----------------------------S--------------S-------S--S--------------
-----S--------------------S---------S--S------S--------------------S----S-S-----
----S---------S--SS-S-SS-S--SS--SSSSSS------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S-------S-----------------------SSSSSSSSS----S---S----------
-------------------S-----------------S--------------S---------------------------
--------------------------------------------------------------------------------
-------------------S--S---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------S----S----S-----S-S-SSSSSS---------------------------
----S--------------------------------------------S------------------------------
--------------------------------------------------------------------------------
------------------------S-----------------------------------------S-------------
--------------------------------------------------------------------------------
-----------------------S--------------------------------------------------------
---------------------------------------SSS---------------------S----------------
-------------------------------------------------------------------SSSSSSS------
-----------------------------------------------------------------S--------------
------------------------------------------------------------------------SSSSSSSS
SSSSSSSSSSSSSSSS--------------------------------------------SSSS----------------
--------------------------------------------------------------------S-----------
---------------S---------------------------------------------------S---------S--
----------------------------------------------------------------------------SSSS
S-------------------------------S-----------------------------------------------
-------------------------------------------------------S------------------------
-------------------------------------S----------------------------------S-SS-SSS
SSSSSSSS-----SSS-----------------S---------S----------------S----------SSS------
-----------S--------------------------------------S--------------------S----S-S-
---------------------------
>forward_96
----------------------------------------------------------------------------CTTG
CTACAAGCCAGGGACA----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------
>reverse_2080
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------T
TTGCCATGTCCTCTGTCGA-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------
