>input_sequence_81608
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-----------------------------------------------------------------------ATGTCGTAC
TACGACCGGCGCGGGGAGTCGTCGGTGCTGGAGGCGTTCACGCTGTCGCCGCTGCCGTACCCGGTGATCCTGATCCTGAT
GATGGTGACGCTGCTGCTGGGGGCGTCGTGGTTCTTCTCGTACGAGGACTTCATGGAGGAGGCGTCGGAGCAGTTCAGCT
GGTTCCTGCTGGGCGTGCCCATCGCGCTCGTCCTCCTCATCCGCTGGATCTCCTCCGTCGACACCTTCGAGGGCTACTTC
GGGTTCTACCCCACCGAGAGCCGCTGGAGGGGGTACCCGGCCGCGCCCTCCGAGGGCAGCTCCCCCTGGGGCGTCGCCAT
GGTCGTCGTCCTCCTGCTCCTCCTCGCCAGCTTCCACTCCACCTTCCAGGACATGTGGAAGCCTTGA-------------
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>chr4B_1_TraesCS4B01G223600
CTGCTACATGCAGCTGCTAGTGCTGCGAGGGGCGGAACACATGTTACAATATGTGAGGCGTCGACGCTTGGAGCTCGGTG
CTGCAAGTCGATGTTGCAAGAGCGATGATCCGAGGTTGTGAGCGGTAGTTGTGTATGCTGCCACCATGGCTATGTTGTGA
CGGTGCAGTGAGCATAGCTGATGGTCCATTCGGTTCTACGACAATGCTACGGTATGGAGACACAAAGGAAAACTACACAG
CTTGGATGGACTACAACAGCGTTGCTTTAGAAGATCCGGCATGGCGGTCAGTCTAATCACTTTCCCTCACTTTAGGCCTA
AATCAAGGCCGAGCCTTATGTCTGAATTATTGGCCCGTGGAATAATATTTGTCGACTTGAATGGACAGTCCAGAAAGCTC
CACTTTTAGATTTCGACTAGACTAGAGTATTGGACAGACCGTTCTACGTACTGTCACCTTGTCCCTCCACCACGTCTGTG
GCTTCACCTCATCAG-----------------------------------------------------------------
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-------------------------TTACTACTCTGCACATATCAGCATCACAAGTTATACTATGCC-AAGAAAGAATAT
CATCGTGCTCCCAAACATACATCATGGTACACGTAAAGCTAATGATAATAGGTCTGTTTCTGAACCTCTCTCCGCCACGC
GTACACCACCACCCGCAGCACAAAGACTTTT-TGGGGTGCTGTTTTGCTGATGGGGACGTCCACTGGGAGCTAGCTCATC
AGCTGTGATACCTGAAGCAGACAGCGTCAATCCTCCATAATCTCGTGGCACGGGTCTAGGTGAATGAATAATTTAGCCAG
CA-AAGTCCACAAGCCCAGAGACTTCACTCCTCGCACGAACTTTCAATCTATCCG--TCCTCGCGACGCGCGCCAGGCCA
CAGCCGCAACACG-------CTACTAGCAGTTACGCGCCCCTCCTACCCCTATCCCCCCACCTCGTCCTTCCACTTTCCC
CACCTCTCAGGCCAAGCAAACGCACACCAGGCGAGGCAACGCAAAGAAGCAGGC---------AGGCAGCCATGTCGTAC
TACGACCGGCGCGGGGAGTCGTCGGTGCTGGAGGCGTTCACGCTGTCGCCGCTGCCGTACCCGGTGATCCTGATCCTGAT
GATGGTGACGCTGCTGCTGGGGGCGTCGTGGTTCTTCTCGTACGAGGACTTCATGGAGGAGGCGTCGGAGCAGTTCAGCT
GGTTCCTGCTGGGCGTGCCCATCGCGCTCGTCCTCCTCATCCGCTGGATCTCCTCCGTCGACACCTTCGAGGGCTACTTC
GGGTTCTACCCCACCGAGAGCCGCTGGAGGGGGTACCCGGCCGCGCCCTCCGAGGGCAGCTCCCCCTGGGGCGTCGCCAT
GGTCGTCGTCCTCCTGCTCCTCCTCGCCAGCTTCCACTCCACCTTCCAGGACATGTGGAAGCCTTGATGGAATGATCGAT
GCTCCGATCCATACCTCGTATGTACGTGTATGTGTGTATGTATGTA----ATTCCATCGTATCGATCTGTAGTACACCTA
CGAATGATTGTTGCTTCCACCTTCCAGGCGGTTGCTGCACCTGCACGTATGTGTGCCTTGCTTTTCCTCCTGTACTGTAC
ATAGATGA---AGGTTATATTCTGCTAGCTG--AAAAACTATAGAGCTTGAGTGTCACTCCTCTGTACTGGTTCTTGTTC
TGTGTTTTACTGAAT----CAACAGGTTTCTGTGGGAAAGTTTACTCTA------------------------TTCTGT-
-----------------------CGAAATATTTGCCATGTCCTTCGTTCTTCATCAACATACATGTTTTTTTTAACTGGA
TG-------------------GCAGTTGGTGGGAGCAATCATAGATAGAAGCTGCACAAAGGAA----------------
---------------------GATAGTAGGAGCGTAGACTGGAGAGTTCTGGGACGCGGGCAATCATGACACTT-GTTCG
TTCTGGTATTATCCCTTTGTGAGCGTATCTCGGCCCGTAGCCAGAATCTTGTCCTCTCGTCCACCTGGTGCTTGCTGGTG
GTG-----CTAG--------GAAGGAAGATTGCCGACGCCACTGTGACCAACATGGGCAAAGATAGGGAGAGGTTGTTGG
TCTGTCAATGGATATCACTT-GTACGTATGTGCAATTCTGCATGATCCACAGAAACCTTATTAGACAGGAGAAAGATCCC
GAAAAACCTGCAGGTTCCAGTGGGAACCTGTACTCGGGTAGTGCCTACTTTTCCACCATCTTCGAACGCCGCTGCATCAT
TAAT-----------TAAGGCGGGCTTTTGAAGA-GGGGAGAAAATTACTCGATCGCTGACGGTGCGGTTGTTGTTCCG-
-ATGACAGTGTCGGCCACGAAGATCACAAGAAA--TTAAAGTATGTGGCGAATCTCTAGCCCCGGAAGTGCATCCTCTTT
GGCAAGGACACGATGCATTCGGCTTTGCTGGATG---CCTTCTCGTGGTTTCCTGAAGCCGGGGAGTGTGATGCGAGTCT
TGTTCAAAGTGTTATATA
>chr4A_3
--GCTACATGCATATGCTAGTGTTGCAAAGGAGGGAATGAATGTTACAAGGTGCTAGGCGGCCACGCTTGGCGCTTGGAG
CTGCAAGTCGATGCTGCAAGAGCGACAATGTCGGGTTGTGTGCGGCAATCATCTATGCTGCCACCATGGTGATGTTGTGA
CGGTACGGTAAGGGTACGTGCATTCAGTACT---------ACAACGACATGATCTGGAGAGACAAAGAAAGATTACACAA
TC----TGGGCTACAACCGTGTTGCTTTAGAAGATCCGGCGCGGCGGTCAGTCTAATCACTTCCCCTCACTTTAGGCCTA
AATCAAGGCCGAGCCTTAAGCCTGAATTATTGGCCGTGGAATGATCC-TTGTCGACTTGAATGGACAGTCCAGAAAGCTT
CACTTTTAGATTCCGACTAGACTAAAGTATTGGACAGACCATTCTATGTACCGTCACCTTCTCACTTCACCAAGTATGTG
GCTTCATCTCATCAATTAGGGCATGTACAATAGTGACATATGAATACACATGCCTCATAACAAAAAATAGTTTGACACAT
TTACATTTGTTTTTTCTCCTCAATGCAAGCTATCATTAGTGGGCCTCATCAATAAATAGAAAATAAAGACTCTAGTACAT
ATGCATCCGTCTCCCGCTGAGGATCCCGCTTCTATGTCCAAACCCACTTTATTTGATATCCGATCCTACATGGCATCACC
CTAAGATTATGGGTTGGCCATGCCTTTACTACTCTGCACATATCAGCATCACAAGTTATACTATGCC-AAGAAAGAATAT
CATCGTGTTCCCAAACATACATCATGCTACACGTAAAGCTAATGATGATAGCTCTGCTTCCGAACCTCTCCCCGCCACGC
GTACACCACCACCCGCAGCACAAAGACTTTTTTGAGGTGCTGTTTTGCTGACGGGGACGTCCACCGGGAGCTCATCGATC
AGCTGTGATACCTGAAGCAGACAGCGCCAATCCTGGGTGCT----------GGGTCTAGG----TGAATAATTTAGCCAC
CGGAAGTCCACAAGCCCACAGGCTCCACTCCACGCACGAACTTCCAATCCATCCGTCTCCTCGCCACGCGCGCCAGGCCA
CAGCCGCAACACGCTCGCTACTACTAGCAGTTACGCGCCCCT---------ATCCCCCCACCTCTCCCTTCCACTTTCCC
CACCTCGCAGGCCAAGCAAACGCACGCCAGGCGAGGCAGCACAAAGAAGCA---------GCGAGGCAGCCATGTCGTAC
TACGACCGGCGCGGGGAGTCGTCGGTGCTGGAGGCGTTCACGCTGTCGCCGCTGCCGTACCCGGTGATCCTGATCCTGAT
GATGGTGACGCTGCTGCTGGGGGCGTCGTGGTTCTTCTCCTACGAGGAGTTCATGGAGGAGGCGTCGGAGCAGTTCAGCT
GGTTCCTGCTGGGCGTGCCCATCGCGCTCGTCCTCCTCATCCGCTGGATCTCCTCCGTCGACACCTTCGAGGGCTACTTC
GGCTTCTACCCCACCGAGAGCCGCTGGCGGGGCTACCCGGCCGCGCCCTCCGAGGGCAGCTCCCCCTGGGGCGTCGCCAT
GGTCGTCCTCCTCCTCCTCGTCCTCGCCAGCTTCCACTCCACCTTCCAGGACATGTGGAAGGCTTGATGGAATGATCGGT
TCTCCGATCCATACCTCGTAC------GTATGTGTGTATGTATGT----GATTCCATCGTGTCGATCTGTAGTACGCCTA
TGAATGATTGATTGTTG---CTTCCAGGCGGTTGCTGCACCTGCACGTATGTATGCCTTGCTTTTCCTCCTGTACTGTAC
ATAGATGATGGAGGTTATATTCTGCTAGTAGCTAAAAACTATAGAGCTTGAGTGTTACCCCTCTGTACTGGTTCTTGTTC
TGTGTCTTACTGAATGAATCAATAGGTTTCTGTTGGAAAATTTACTCTATCCACTGCACCTTATAATCAATCATTCTGTT
GAAATATTTG--------------------------ATGTCCTTCGTTCTTCATCAACATACATGTTTCTTTTTTCTTTT
CTTTTTTTCTGAAACTGGGTTGCAGTTGGTGGGAGCAATCATAGATAGAAGCTGCACAAAGGAAGATACGATCAGCGGGA
CACAGCGGGTAGATGAAACGCGATAGTAGGAGCATAGACTGGAGGGTTCTGGGACGCGGGCAATCATGACACTT-GTTCG
TTCTGGTATTATCCCTTTGCGAACGGATCTCGGCCCATGGCCAGAATCTTGTCCTCTCGTCCACCTGGTGCTTGCTGGTG
GTG-----CTAGGACGGAAGGAAGGAAGATTGCCGACGCCACTGTGACCAACATGGGCAAAGATAGGGAGAGGTTGTTGG
CCCGTCAATGGATATCACTTTGTACATATGTGCAATTCTGCATGATCCACAGAAACCTTATTCGACAGGAGAAAGATCCC
GAAAAACCTGCAGGTTCCGGTGGGAAACTGTACTCGGGTCGTGGCTATTTTCCCGTCATCTTCGAACGGCGCTGCATCAT
TAAT-----------TAAGGCGGGCTTTTGGAGAGGGGGAGAAAATTACTCGATCTTTGCCGGTGCGGTTGTTGTTCCG-
-ACGACGGTGTCGGCCACGAAGATAGCAAAAAAAATTAAAGTAA---GCGAATCTCTAGCCCCGGAAGTGCATCCTCTT-
GGCAAGGACACGGTGTATTCGGCTTTGCTAGATGCCTCCTTCTCGTGGCTTCCTGGAGCCGGGGAGTGTGATGTGAGTCT
TGTTCAAAGTGTTTTATA
>chr4D_482
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-CTTCACCTCATCAA-----------------------------------------------------------------
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-------------------------TTGCTACTCTACACATATCAGCATCACAAGTTATTTGCCAAGAAAGAGAGATTAT
CATCGTGTTCCCAAACATACATCATGTTACACGTAAAGCTAATGGTGATAGCTCTGCTTGCGAACCTCTCCCCGCCACGC
GTACACCACCACCCGCAGCACAAAGACTTTTT-GGGGTGCTGTTTTGCTGACGGGGACGTCCACTGGGAGCTAGCTCATC
AGCTGTGATACCTGAAGCAGACAGCGACAT----------------------GGTCTAGGTGAATGAATAATTTAGCCAC
CA-AAGTCCACAAGCCCACAGACTCCACTCCACGCACGAACTTCCAATCCATCCGTCTCCTC-----------CAGGCCA
CAGCCGCAACACG-------CTACTAGCAGTTACGCGCCCCT---------ATCCCCCCACCTCTTCCTTCCACTTTCCC
CACCTCGCAGGCCAAGCAAACG----CCAGGCGACGCAAGGCAAGGAAGCGGCCCAGCGGGCGAGGCAGCCATGTCGTAC
TACGACCGGCGTGGGGAGTCGTCGGTGCTGGAGGCGTTCACGCTGTCGCCGCTGCCTTACCCGGTGATCCTGATCCTGAT
GATGGTGACGCTGCTGCTGGGGGCGTCGTGGTTCTTCTCCTACGAGGAGTTCATGGAGGAGGCGTCGGAGCAGTTCAGCT
GGTTCCTGCTGGGCGTGCCCATCGCGCTCGTGCTCCTCATCCGCTGGATCTCCTCCGTCGACACCTTCGAGGGTTACTTC
GGGTTCTACCCCACCGAGAGCCGCTGGCGGGGCTACCCGGCCGCGCCCTCCGAGGGCAGCTCCCCCTGGGGCGTCGCCAT
GGTCGTCGTCCTCCTCCTCGTCCTCGCCAGTTTCCACTCCACCTTCCAGGACATGTGGAAGGCTTGATGGAATGATCGGT
GCTCCGATCCATACCTCGTATGTACGTGTATGTGTGTATGTATGTATGTGATTCCATCGTATCGATCTGTGGTACACCTA
TGAAT----GATTGTTG---CTTCCAGGCGGTTGCTGCACCTGCACGTATGTGTGCCTTGCTTTTCCTCCTGTATATAGA
C-----GA---AGGTTATATTCTGCTAGCTG--AAAAACTATAGAGCTTGAGTGTCACTCCTCTGTACTGGTCCTTGTTC
TGTGTTTTAC----TGAATCAACAGGTTTCTGTGGGAAAATTTACTCTA------------------------TTCTGTC
GAAATATTTGCCATGTCCTCTGTCGAAATATTTGCCATGTCCTTCGTTCTTCATCAACATACATGTTAAAG---------
-------------ACTGGGTTGCAGTTGGTGGGAGCAATCATAGATAGAAGCTGCACAAAGGAAGATACGATCAGTGGGA
CACAGCGGGTAGATGAAACGCGGTAGTAGGAGCATAGACTGGAGAGTTCT-GGACGCGGGCAATCATGACACTTTGTTCG
TTCTCGTATTATCCCTTTGCGAGCGTATCTCGGCCCATAGCCAGAATCTTGTCCTCTCGTCCACCTGGTGCTTGCTGGTG
GTGCTACTCTAG--------GAAGGAAGATTGCCGACGCTACTGTGACCAACATGGGCAAAGATAGGGAGAGGTTGTTGG
TCCGTCAATGGATATCACTTTGTACGTATGTGCAATTCTGCATGATCCACAGAAACCTTATTTGACAGGAGAAAGATCCC
GAAAAACCTGCAGGTTCCAGTGGGAACCTGTACTCG-----TGCTTACTTTTCCATCATCTTCGAACGGCGCTGCATCAG
TGTTTATGTTAATTATAAGGTACGCTTTTGAAGAGGGGGATAAAATTACTGGATCGTTGCCGGTGCGTTTGTTGTTCCCC
CATGACAGTGTCGGCCACAAAGATCGCAAGAAA--TTAAAGTAA---GCGAATCTCTCGCCCCGGAAGTGCATCCTCTTT
GGGATGGACACGATGCATTCGGCTTTGCTGGATGCCTCCTCCTCGTGGCTTCCTGAAGCCGGGGAGTGTGATGCGAGTCT
TGTTCAAA----------
>SNPs
SS----------SS--------S---S-S--SS----SSS---------SS--SS-----S-S--------S---S--S-
-------------S-----------SS--SSSS-------S----S-S-SS-S----------------SS---------
----S-S--S--SS--SS--SSSSSSSSSSSSSSSSSSSS----S-SS-S-S-S------S------S--S-S------S
SSSSSS---S-------S-S--------------------SS--------------------S-----------------
------------------S-S--------------SSS-S-SS-SSSS-------------------------------S
------------S-----------S---------------S-----S----S--------S--S--S-----S--S----
--------------S-----------------------------------------------------------------
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-------S------------------S-------------------S----S----S---S---------S---------
---------------------------------------------------S----------------------------
--------------------------S-------SSS-SS-SSSSSSSSSS----------------------------S
------------------S-----S------S-----------S-----S--------------S---------------
------------------------------------------SSSSSSSSS-------------S---------------
------S------------------S--------------------------S---------------------------
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---------------------------------------S--------S-------------------------------
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---------------------------S----S-----------------------------------------------
---------------S---S-----------------------------------------S----------------S-
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S---------S-SS--SSSS------------------------------------------------------------
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---------------------------------------S----------------------------------------
--------------------------------------------------------------------S----SS--SSS
SS------------------------------------------------------------------------------
---------------------------------S----------------------------------------------
-------------------S----------------S-------------------------------------------
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--S-----------------------------------------------------------S-----------------
---------------------------------------S---------------S------------S-----------
--------------------------------------------------------S--S--------------------
-------------------------S-----------------SSSS---------------------------------
------------------------------------------------S-------------------------------
-------------S----
>forward_130
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------------------------------CGAGGTTGTGAGCGGTAGTT------------------------------
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>reverse_1679
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------------------------------------------------------------------------------AT
GCTCCGATCCATACCTCG--------------------------------------------------------------
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