>input_sequence_81599
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-----------------------------------------------ATGA---AGGGAAGCGGCACCGCCGTCGTGCTG
ATTCTCTCGCTCGCAGTCCTCCTCGTCCTGGGCGCCGCCGTCGCCGACGACGCCATCATTCGCCTCCACTCCGGTGAGCT
TTGAAATTAGCCTCAGATGGTTTATAGTTAGTCAGCTGGATGT---GTGCGTGAGCTCGTCG-----CGGATCTTGTTGC
AGATGCGGTGACGGAGGAGACGAGGCCGTGGGACTGCTGCGACCACCCCGTGTGCACCAAGAGGAGCTGGTGCGGCTGCA
AGGACGTCGTCGATCAGTGCTTCCCCACCTGCAAGAACTGCAAGCCGGCGAAGCGAGCGGACGAGTCGGCCCCTTCCGGC
TACATGTGCCGGGAGACCTACCACGGCAGTCCCGGGCCCAAGTGCATGCTCTGA--------------------------
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>chr3B_1_TraesCS3B01G036900
CTTATAGTTTTTTTTTTTGAGTTTTGGTAAGGTTTTCTGTCTTCCTCAGAAAGGCGAGGCAGCGACCGGCTTTCTGAATA
TAGAATAAGTTTCACCTCGCCTAACCCCTATTTAGATAGTATTTGTGAAAGTTCGTCTCTGGCAGATCTCGCGCGATTTG
GTCGGCATTTGTCTTTGGTGGATCCACTTGGATCCATTCTTCGTTCGGTTATGTTCATGTTTAGATTCTTCCGATCTACG
CTTCTCTTCATCGACGGCGGTTACTGTTCTGGTGCGCTGGTCCTCTAGGGCCTTCGCACGACGACTTCCCGACTGTCTAC
TACGAAAAAGTTTGCTCGGCTCGGCAGCTCTGATGATAGAGGGGCGATATAGGCGGCGCGCCTTCGGCTCGCTCTAGTGC
TTGTAGTCGTTGCTAAGTGGTATACAGATGTGGATGTAATTTTACTTTTGGCATTGTTGGTATTACCTTACAGTTGATGA
ATATATCGAAAGATTTATTCAAAAAATAGAGATTGCCACGTGTTCATCTTATCTTAGTTGACATACTCTAATCACATCTG
ATCTCATTGCATCGAGATTGGGAGTGCCTCGATTAAGCTCGCTGCAGCCGTACGTGGGCACATGCATTTGATTCGATATG
TCTCGTGTCTCTTCAATGTTTGTAGCCTGGAATCCTGGATGGATATGGTAAAAACAAATCTCAACTCAATGTATGGAGTC
ATGCACGCGCAACATGCGTGCAGTTAACAAGCAGTAGATCACGTGACGCACGCGTCCGGCAGTGCCTGCCTTTATCAACG
TGGCAGCAGCTTTTGTGCACGCAGCTCGTCTCCAGATCCAGATCTACCTAGCTATAGCTCGCATAATCAGTAGCTGGGTT
TGTCTCCGTGTCGCCTCCCGATTGGTCCGAGGAGGCTACATATACCGGTGCAAAT-------GAACAACCCACAAGCACA
CATACACACAGAGAGGGAACGAAGCAGTAATAATCAATCAACCAGCCATGA---AGGGAAGCGGCACCGCCGTCGTGCTG
ATTCTCTCGCTCGCAGTCCTCCTCGTCCTGGGCGCCGCCGTCGCCGACGACGCCATCATTCGCCTCCACTCCGGTGAGCT
TTGAAATTAGCCTCAGATGGTTTATAGTTAGTCAGCTGGATGT---GTGCGTGAGCTCGTCG-----CGGATCTTGTTGC
AGATGCGGTGACGGAGGAGACGAGGCCGTGGGACTGCTGCGACCACCCCGTGTGCACCAAGAGGAGCTGGTGCGGCTGCA
AGGACGTCGTCGATCAGTGCTTCCCCACCTGCAAGAACTGCAAGCCGGCGAAGCGAGCGGACGAGTCGGCCCCTTCCGGC
TACATGTGCCGGGAGACCTACCACGGCAGTCCCGGGCCCAAGTGCATGCTCTGATTCTGATATCCGTTTGTTGTTCAAGA
GATGGGCTGTG----------CTAGCTGCTGTATGTGATGTTGTAGCACTACTACGCTAGCTGCTGGTGAGCCTAGCTGT
ACGGCAGCGATTGA------------------------------------------------------------------
----------------------------------------------------------------------ATAAGATTTG
GACACTTACCTTCTTAGGAGCAATAGTATTGCCGTTTAATGAAGAAAGATAACAAAAAAGTTTCACAAAACTTGCACACA
ACTTCGTTTTAAACTTGCAATTTTTGTAGCATGCAATGATAACAAAATAGTGTAGTTTTCACAGATATTACATAGTAATT
ATGTGAGTACATTTCCACTCACCCAACATTCCAAAAATACCCACAAAATAAAAATAAAAATCAAGTAACAAAGAAAAAAC
AAAAACAAAAGCAAAACAG--ATAAAAACAGAAAATAAACAAACAGATAGATAGGAGGGCTGGATCGCACATTTACTAAG
CTTCAGATCAGTAGCAAATCGACTGACCCAAATATGGGGTCAATTGAAAATATAAGCCCAACGGAACAAACATCACAGTC
GTGAAAAAAAAC--GAAGCACGAATCTTGGAACAACAATCAACTACCAAGAAATTAAATGACTCAAATTCAAACTTCAGG
CAACCTACAAGTAGCTAAAATTAATGATTTTAGAAATAGAACTTTGGTCAAACTGGATGAAAGTTTCATGCAGTTTCATG
GTTCATGCCGTTTCATCATGAAATGGAAGACACCCGCACCATTCAGTTATTAAA--GATAAGATTGAATAGAACTCTGTC
TTGTACTTCCTTCGTCCCAAAATAAGTGTCTTAAACTTAGTATAAATTTTTACTAAAATTAGTATAAAGTTGAGACACTT
AGAGCATCTATCTACAGCCGGACCTCTCAAAGCCGCCACATACGCCCGGGCGGGCTGCCTGGTCACGTTTTTTCGATCTA
GACGGACGCCTCAAACAGGCCTCAAACGTCCGGACTGACCGACACCCCTATATTCAACCCGAATGTGGGGCGGGTATGGG
GTGGTC
>chr3D_874
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-------------------------------------------------------------------------CTAGGTT
CGTCTCTGTGTCACCTCCCGATTGGTCCGAGGAGGCTACATATACCGGTACAAATGCGATGCGAACGACCCACAAGCACA
CATACACACCCAGAGCGAACGAAGCAGTAGCAATCAATCGAACAGCCATGAAGAAGGGAAGCAGCGCCGCCGTCCTGCTG
ATGCTCTCGCTCGCGGCCCTCCTCCTCGTCGGCGCCGCCGTCGCGGACGACGCCATCATTCGCCTCCACTCCGGTGAGCT
TTGAAATTAGCCTCAGCTGTTTTATAGTTAGTCAGTTGGATGTATAGTGCGTGAGCTCGTCGATCTTCGGATCTTGTTGC
AGACGCGGGGACGGGGGAGACGAGGCCGTGGGACTGCTGCGACCACCCCGTGTGCACCAAGAGGAGCTGGTGCGGCTGCA
AGGACGTGGTCGAGCAGTGCTTCCCCGCCTGCAGGAGCTGCAAGCCGGCCAAGCGAGCGGACGAGTCGGCCCCTTCCGGC
TACATGTGCCGGGACGCCTATCACGGCAGTCCCGGGCCTAAGTGCATGCTCTGATTCTCATATCTGTTTGTTGTTCGAGA
TGGACGTACGGTGCTAGCTGCCTAGCTGACGTGTCTGATGTTGTAGCACTACTACGCTAGCTGCTGGTGAGCCTAGCTGT
ACGGCAGCGATTGAATAAGATTTTTTTTTTGCGGGAAATCATGAGAGCTTTATTCAAACAAAAGAGCTCCTGGGATCATC
AGTCATCAGGCTACTGATCAGGAACGAGGGTTCAGAGTCGAGCCAATTCTCGGTCACCAACAGCGATTGAATAAGATTTG
GACACTTACCTTCTTAGGAGCAATAGTATTACCGTTTAATGAAGAAAGATAACAAAAGAGTTTCAAAAAACTTGCACACA
ACTTCGCTTTAAACTTTCACTTTTTGTAGCATGCGATAATAATAAAATAGTGTAATTTTCAGAGACATTGCATAGAATTT
ATGTGAGTACATTTCCACTCACCCAACATTCCAAAAATACCCACAAAATAGAAGT-AAAATGAAGTAAGAGAGAAAAACC
AAAAACAAATGCAAAACACACATAAAAACAGAAAATAAACAAACAGATAGAGAGGAGGGCTGGATCGCACATTTACTGGG
CTTCGGCCCAGTAGCAAATCGACTGAACCAAATATGAGGTCAGTTGA------------------------------GTC
ATGAAAAAAATAATGAAGCACGAATCTTAGAACAACAATCAACGCCCAAGAAATTGAACGACCCAAATTCAAAATTCAGG
CAACTTACAAGTAGCTAAAG----TGATATTTGAAATAGGACTTTGGTCAAAGTGGATGAAAGTTTCATGCAGTTTCATG
GTTCATGCCGTTTCATCATGAAACGGAAGAAACCCGCACCATTCAGTTATTAAAAAGATAAGATTAAATAGCACTCTGTC
TTATAC--------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S----
S-----S-----S------------------------------------S----------------S-------------
---------SS----S-------------SS--------S-S--------------------S--S--------S-----
--S-----------S-S-------S--S-S--------------S-----------------------------------
----------------S--S---------------S--------------------------------------------
---S----S-----S-----------------------------------------------------------------
-------S-----S------------S------S--S------------S------------------------------
--------------SS----S-----------------S-------------------S-----S-----------S---
SSSSS-SSSS------------------SS--S-S---------------------------------------------
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------------------------------S--------------------------S-------S--------------
------S---------S--S--------------S--S----S-----------S------S---S---S-----S-S--
--------------------------------------------------S--S-S-----S------S-S-------S-
---------S--------S--------------------------------S-------------------------SS-
----S-SS------------------S---------S-----S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---
S---------SS----------------S--------------SS----------S--S---S----------S------
----S--------------SSSSS----S--S-------S------------S---------------------------
-----------------------S------S----------------------------------S-----S--------
--S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS
>forward_110
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----------TTCACCTCGCCTAACCCCTA--------------------------------------------------
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>reverse_1437
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----------------------------------------------------------------------------AAGA
GATGGGCTGTGCTAGC----------------------------------------------------------------
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