>input_sequence_81576
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---------------------------------------------ATGCTGCAATTCCCGGCGCTGATGCGGCAGTGGCC
GTCGCCGCCGCTGATTCCGGCGTCCACACTCCTCCCCGTGCCCGCAACTACCCAGGAGGACGAGCTCCTCCTCGCCATGG
CCGAGTCCGACCTCGAGGACAAGGTACTGCTGCTCTTCCCCTTCCTGTCCGTGTCCTTCGTCCCCTCCCCACCGCACGCC
GCGGCTCTAACGCCTGCCCCGCTCTGCTCTTTCTTGCTCTCGCCTCTCAGCTCAACGCGATCCGCAAGACCAACAGCAAC
CTGGTGATCATAGGCAAGCCCACCAACGACATCAAGGAGGAGTACGACGCGGACGTGGAGGAGGACGACGTCGACAACGT
CGACGAGTCCGACGGGGACGACTTCGACCAAGAAACCGGCTGA-------------------------------------
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>chr6D_1_TraesCS6D01G191700
CATATTCGAACGCATTTTTGTTGTGTGAGCACTGAAGCTGCCGTCGGCGAGGGTGGGAGTAAGGATAACCGGCAACACAT
GTTGAATGCCATGTTGAAATAACGGACATTGACCTAGTGAGGTCTTCAGTCATGATTATTGGGTC-AGGGACGTGTGGTA
-TTTTTTTCTCTCTCGTTGCAATGCACGAGCTCTTTTTCTAG-TTTTTTGAAGTACCATGTACCATTCATATATCAAACA
GAGATAGTACATTACACACAACACCCAGAACGACAAGCTGTCTGGACATTTTGCACAAAGGACCACCAAGAACAAAATAT
TACATCCAT-CCCCGTGGAGCCCCCTGAACAGATCACCAACAAACGTCATCTGCAACCGCCGTCGCCAGAGACGCCGACA
GAGAAGAAGACGAGACGCCACAAACCCTAGATCCGAGAAATCTTCCTTGCAACCAAGCTGCCTTGTGGACCTCTTGTGCT
CCCCGTCGCAAACGACGAGGCCCATGTCTCTCTGGCACATCGGCCGGGGATGAACCCCGAGATTCCTGAACCGCAACACC
GCTACATCTGGTCGACACCGTCGATGGAACACCACGGCACCGCCCAC---------------CAGTGTCTGGAAACCACC
ATCGTCGATGTCATAGAGGACGCCGCCCAGACTCCAATACGACTTCTGCCAGTCCCTGTAGCAGCGCCAGACCGAACAGC
AATATGGCCTCTGCTAGTTATCAATATGGCAGCTATTTCCTCTGAAAACC------------------------------
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--------------------------------CCCCCATAAAATCATCGAATTCCTCCTCTGCATGCTGGGGCTGGGCTG
GGCCAGAAAGCCAGCCAAGCGCTGCTGCTGGCCCAGAAAATCCCAGCCCACTGTGTTGGAACGAAACAG-CAGAAGGAAA
AAACCTCCACGCCGTCACGGCCGGTCACATTTCAGTAGGAATAGCCTTCGCCAGTCCAAGTCCTCTCTCTCTCCCTGCCC
CCCAAACCGAAGTAGCGGCGGCG---GCGAAGTGGTGAAGAGGAGATGCTGCAATTCCCGGCGCTGATGCGGCAGTGGCC
GTCGCCGCCGCTGATTCCGGCGTCCACACTCCTCCCCGTGCCCGCAACTACCCAGGAGGACGAGCTCCTCCTCGCCATGG
CCGAGTCCGACCTCGAGGACAAGGTACTGCTGCTCTTCCCCTTCCTGTCCGTGTCCTTCGTCCCCTCCCCACCGCACGCC
GCGGCTCTAACGCCTGCCCCGCTCTGCTCTTTCTTGCTCTCGCCTCTCAGCTCAACGCGATCCGCAAGACCAACAGCAAC
CTGGTGATCATAGGCAAGCCCACCAACGACATCAAGGAGGAGTACGACGCGGACGTGGAGGAGGACGACGTCGACAACGT
CGACGAGTCCGACGGGGACGACTTCGACCAAGAAACCGGCTGAGCCGTCCGGCTCCCCCAGGCTCCAGTCCCGAGACGTT
GCCCTCTCTGCGAACCAATCTGTACGCTTGTTGGAGCCCGAGATCCCCAATTATCTCTAGTTATTAGATCAATCTGTCCC
AGCTATCATACTTTACTTTGCTACATGGTGTTTCGACGATTCGGGGGG-TTACCTACCCTTGGATTAGCTTGTTAATGCT
GTCAAGTATTTATCGAAACACCGATATCAATCATTACTCTATGTGAATGCCTTACTGCCTTGTGCTTCTTGGTCAAGTTT
CTTTACAGTGAGTCAGTGATATGCTG---ATATTGGGTATCTGTGTTTGGAAGCTAGGGATATGTGATTCACTAATGCGC
CCCTTGTATTCCTTTCTGAAGCATCATGTATGTAAATTGTGATGGTCAATCTATAGTTAGTGTTGTGGATGGCCGCCCTA
GAGATGGAATATCAGAGACAGAGATTGGATTGTATCATTTCGATTAGGGATAGGGTTCAATGTTTGACTACTCCAGTTAC
GAAACATGGGTGCCAAGTAGATCATCTCTATGTAACAGGAAGCACTTACCAAGTATTGGGAAGCAATGGATCAATTGC--
GGACTTATAGTTATTGATGAGGACCAGGTCCCAGCCCAGTGGTGAGAGCGCAGTGGCGTGCCTGCACCT-----GCCTAG
GTTTGACTCCCAATGGATGCAAAATTTAGCAGCGCTGGTTAAATTTCAGTGGACTGCTTTCCAGGGCCTCTCATTCTCAT
TAATAATAAGCCATTATAGCAGGAGCAGCACATGCAGGAAGAAGCGGAACAACACAACAGCAATGATCGAGTAAGCCGTG
AAGTAGTGGAGGACATAAAGTACTCCTCCGTCCCATAATATAAGACGTTTTGCAAGCTAACATAGCTTACAAAAACGTCT
ATATTGTGCTGCTAT------------------------AAGTTTTAGGCGTCGTATCAGGTGGAGAAAGTTCATGGCTA
CATACATGGGCGTCACCGTTGATGACGAAGGGTGCCCT
>chr6A_1
CATATTCGAATGCATTGTGGTTGTGTTAGCACTGAAGCCACCGTCGGCGAGGGTGGGAAGAAGGATAACCGACAACACAT
GTGGAATGCCATGTTGAAATAACGGACATTGACCTAGTGAGGTCTTTAGTCATGATTATTGGGTC-AGGGACGTGTGTTA
-TTTT-TTCTCTCTCGTTGCAATGCACGGGCTCTTGTTCTAATTTTTTTGAAGTACCATGTACCATTCATATATCAAACA
GAGATAGTACATTACACACAACACCCAGAACGACAAGTTGTCCGGACATTTTGCACAAAGGACCCCCAAGAACAAAATAT
TACATCCAT-CCCCGTG-AGCCCCCTGAACAGATCACCAACAAATGTCATTTGCAACTGCCATCGTCGGAGACGCCGACG
GAG-AGAAGACGAGACACCACAAACCCTAGATCTGAGAAATCTTCCTTGCAACCAATCTGCTTTGTGGACCTCTTGTGCT
CCCCATCACAAACGACGAGGCCCATGTCTCTCTGGCACATCGGTCGGGGATGAACCCCGAGATTCCTGAACCGCAACACC
GCTACATCTGGTCGACACCATTGATGGAACACCACGGCACCGCCCACAAGCGCCGGAACCAACAGCGTCTGGAAACCACC
ATCGTCGACGACACAGAGGACGCCGCCCAGACTCCAATACGACTTCTGCCAGTCCCTGTAGCAGCGCCAGAGCGAACACG
AATACGGCCTTTGCTAGTTATCAATATGGCAGCTATTTCCTCTAAAAACC------------------------------
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--------------------------------C--CCATAAAATCATCGAATTCCTCCACTGCATGCTGGGGCTGGGCTG
GGCCAGAATGCCAGCCAGACGCTGCTGCTGGCCCAGCAAATCCCAGCCCATTGTGTCAGAACGAAACAAACAGAAGGAAA
AAAC----------------------------------------------------------------------------
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>chr6B_94
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-------------TTGAAATAACGGACATTGATCTAGTGAGGTCTTCAGTCATGATTATTGGGGTTAGAGATGTGTGGTG
TTTTT-TTCTCTCTCGTTGCAACCCACATGCATTTTTTCTAG-TTTATTTAATTACCATGTACCATTCACATATCAAACA
GGGATAGTACATCACACACATCACCCAGAACGACAAGCTGTCCGGACACTTTGCACAAAGGACCCCCAAGAACAAAATAT
TACATCCAACCCCCTGG-AGCCCCTTGAACAGATCACCAACAAACATCATCTGCAACCGCCGTCGCCGTAGACGTCGACA
GAGAAGAAGACAAGACGCCACAAACCCTAGATCCGAGAAATCTTCCTTGCAACCAAGCTGCTTTGTGGACCTCTTGTGCT
CCCCGTAACAAATGACGAGGCCCATGTCTCTCTCGCACATCGGCCGGGGATGAACCCTGAGATTCCCGAACCGCAACACC
GCTACATCTGTTCGACACCGTCGATGGAACACCACAACACTGCCCACCAACACCGGAACCACCAGCGTCTGGAAACCACC
ATCGTCGACGTCAAAGAGGATGCCGCCCAGACTCCAATACAACTTCTGCCAGTCCCTGTAGTAGCGCCAGAGCGAACCCC
AATACGACCTTTGCTAGTTATCAATATGGCAGCTATTTCCTCTGAAAAACCCCGAAAGTGCTCTTTTGATCCCGAGCTCA
TATGCTCCTGCATGAACAGTAAAATCGAAAAAATAGTAAAAAATACAAAAAAAATCTGATTTTTGTGATGAACATTGATA
ATTTTTCTAACTGCGTGCAAAATGTCAGGTTGAAATGACATTCGTGGAGGTCCGGAAAAATAAAAATAAAATCGATGGTC
CAAAAAGACTATTGTTGGAAGCATTTTGGAGCATCGATTTTATTATTTTTGCCCAGACCTTCACGAATGTCATTTCGACC
TGAAGTTTTGCACGCAGTTTGAACATTTATCAATGTTTTGAATTTGTTTAATATTTTTTCGATTTTACACTTCATGCGGG
AGCATATGAGCTGGGGATCAAATACTCCACGTC--CCATAAAATCATCGAATTCCTCCACTGCATGCTGGGGCTGGGCTG
GGCCAGAAAGGCAGCCAGGCGCTGCTGCTGGCCCAGGAAATCCCAGCCCACTGTGTTG--------------GAGGGAAA
AAACCTCCACGCAGTCACGGCTGGTCACATTTCAGTAGGAATAGCCTTCGCCAGTCCAAGTCCTCTCTCTCTC-------
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>chr6A_877
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------------------------------------------------------------------------------AA
AAACCTCCACGCCGTCACGGCCGGTCACATTTCGG------TAGCCTTCGGCAGTCCAAGCCCCCCCCA----------C
CCCAAAGCGAAGTAGCGGCGGCGAAGTGGTGA-----AAGAGGAGATGCTGCAATTCCCGGCGCTGATGCGGCAGTGGCC
GTCGCCGCCGCTGATTCCGGCGTCCACACTCCTCCCCGTGCCCGCAACTACCCAGGAGGACGAGCTCCTCCTCGCCATGG
CCGAATCCGACCTCGAGGACAAGGTACTGCTGCTCTTCCCCTTCCTGCCCGTGTCCTTCG-----TCCCCACCGCACGCC
GCGGCTCTAACGCCTGCCCCGTTCTGCTCTTTCTTGCTCTCGCCTCTCAGCTGAATGCGATCCGCAAGACCAACAGCAAC
CTGGTGATCATAGGCAAGCCTACCAACGACGTCAAGGAGGAGTACGACGCGGAGGTGGAGGAGGACGACGTCGACAACGT
CGACGAGTCCGACGGGGACGACTTCGACCAAGAAACCGGCTGAGCCGTCCTGCTTCCCCAGGCTCCAGTCCCGAGACGTT
GCCCTTTCTGCGAACCAATCTGTACGCTTGTTGCAGCCCGAGATCCCCAATTATCTCTAGTTATTAGATCAATCTGTCCA
AGCTATCATACTTTACTTTGCTACATGGTGTTTTGACGATTCGGGGGG-TTACCTACCCTTGGATTAGCTTGTTAATGCT
GTCAAGTATTTATCGAAACACCGATATCAATCATTACTCTATGTGAATGCCTTACTGCCTTGTGCCTCTTGGTCAAGTTT
CTTTACAGTGAGTCAGTGATATGCTGATGATATTGGGTATCTGTATTTGGAAGCTAGGGACATGTGATAAACTAACGCGC
CCCTTGTATTCCTTTCTGAAGCATCATGTATGTAAATTGTTATGGTCAATCTATATTTAGTGTTGTGGATGGCCGCCAT-
-------------------AGAGATTGGATTGTATCATTTCGATTAGAGATAGGGTTCAATGTTTGACTACTCCAGTTAT
GAAACATGGGTGCCAAGTAGATCATCTCTATGTGAGCGGAAGCATTTACCAAGTATTGAGAGGCAATGGATCAAAATTAT
GGACTTATGGTTATTGACGAGGACCAGGTCCCAGCCCAGTGGTGAGAGTGCAGTGGCGTGTCTGCACCTTCCTAGCCTAG
GTTTGACTCCCGGTGGATGCAAAATTTAGCCACGTTGGTTAAATTTCAGTGGACTGCTTTCCAGGGCCTCTCATTCTCAT
TAATAAAGAGTCATCATAGCAGGAGCAGCACATGCAGGAAGAAGCGGAACGACACAACAGCAATGATTGAGTAAGCTGTG
AAGTAGTGGAGGATATAAACTACTCCCTCCGTCAAGACGT-------TCTTGCAAGCTAACATAGCTTACAAAAACGTCT
TATATTGTGGGACAGAGTGAGTAGCTAAGTAGCTGCTAGAAGTTTTAGGCGTCGTATCAGGTGGAGAAAGTTCATGGCTA
CATACATGGGCATAACCGTTGATGCCAACGGGTGCCCT
>chr6B_942
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---------------------------------------------------------------TCTCTCTCTCCCTGCCC
CCCAAACCGAACTAGCGGCGGCGGCGGCGAAGTGGTGAAGAGGAGATGCTGCAATTCCCGGCGCTGATGCGGCAGTGGCC
GTCGCCGCCGCTGATTCCGGCGTCCACACTCCTCCCCGTGCCCGCAACTACCCAGGAGGACGAGCTCCTCCTCGCCATGG
CCGAGTCCGACCTCGAGGACAAGGTACTGCTGCTCTTCCCCTTCCTGCCCGTGTCCTTCG-----TCCCCACCGCACGCC
GCGGCTCTAACGCCTGCCCCGCTCTGCTCTTTCTTGCTCTCGCCTCTCAGCTGAACGCGATCCGCAAGACCAACAGCAAC
CTGGTGATCATAGGCAAGCCCACCAACGACGTCAAGGAGGAGTACGACGCGGAGGTGGAGGAGGACGACGTCGACAACGT
CGACGAGTCCGACGGGGACGACTTCGACCAAGAAACCGGCTGAGCCGTCAGGCTCCAGT---------------GACGTT
GCCCTTTCTGCGAACCAATCTGTACGCTTGTCGGAGCCCGAGATCCCCAATTATCTCTAGTTATTAGATCAATCTGTCCA
AGCTATTATACTTTACTTTGCTGCGTGGTGTTTCGACGATTCGGGGGGTTTACCTACCCTTGGATTAGCCTGTTAATGCT
GTTAAGTATTTATCGAAACACCGATATTAATCAGTACTCTATGTGAATGCCTTACTGCCTTGTGCTTCTTGGTCAAGTTT
CTTTACAGTGAGTCTGTGATATGCTG---ATATTGAGTATCTTTGTTTGGAAGCTAGGGATATGTGATTCACTAATGCGC
CCCTTGTATTCCTTTCTGAAGCATCATGTATGTAAATTGTGATGGTCAATCTATAGTTAGTGTTGTGGATGACCGCCCTA
AAGATGGAATATCAGAGACAGAGATTGGATTGTATCATTTCGATTAGAGACAGGGTTCAATGTTTGACTACTCCA-----
--AACATGGGTGCCAAGTAGATCATCTCTATGTAAGCAGAAGCATTTACCAAGTATTGAGAGGCAATGGATCAAAATTAT
GGACTTATGGTTATTGACAAGGACCAGGTCCCAGCCCAGTGGTGAGAGCGCAGCGGCGTGTCTGCACCTGCCTAGCCTAG
GTTTGACTCCCGGTGGATGCAAAATTTAGTCACGTTGGTTAAATTTCAGTGGACTGCTTTCCAGGGCCTCTCATTCTCAT
T--TATAGAGTCATTATAGCAGGAGCAGCACATGCAGGAAGAAGCGGAACGACACGACAGCAATGATCAAGTAAGCTGTG
AGGTAGTGGAGGATATAAACTACTCCCTCCACCAAGACGT-------TTTTGCAAGCTAACATAGCTTACAAAAACGTCT
TATATTGTGGGACGGAGGGAGTAGCTAAGTAGCTGTTAGAAGTTTTAGGCGTCGTATCAGGTGGAAAAAGTTCATGGCTA
CATACATGGGCATCACCGTTGATGCCGAAGGGTGCCCT
>SNPs
----------S-----S-S-------S-----------SS------------------SS-----------S--------
--S-----------------------------------------------------------------------------
-----S----------------------S---------------------------------------------------
------------------------------------------S---------------------S---------------
-----------------S-------------------------------------------------S------------
-------------------------------------------------------------S------------------
-------S------------------------------------------------------------------------
-----------------------------------------------------------------S--------------
--------S----S---------------------------------------------------------S------S-
----S-----S---------------------------------------------------------------------
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---------------------------------SS-----------------------S---------------------
-----------------S------------------S-------------------------------S-----------
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-----------------------------------------------S------------SSSSS---------------
----------------------------------------------------S---------------------------
------------------------------S----------------------S--------------------------
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-----S-------------------------------------------------------------------------S
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S----------------------------------------------S-------------------------------S
-----------------------------------SS-------S-------------S--S------------SSSS--
--------S--------S------------------------------------------S-------------------
-----------SS-----------------SS--S---------------------------------------------
------SS--S---------------------------------------S-------------------------S---
-------------S-----S------SS-SS--S-S-SSSSSSSSSS---------------------------------
SSSS-SSSSS-SS-S-----------------------------------------------------------------
-----------S------------S-------------
>forward_283
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-----------------------CCCAGAACGACAAGCTGTCT-------------------------------------
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>reverse_1711
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------------------------------ATCAAGGAGGAGTACGACGC------------------------------
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>forward_649
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---------------------------------------------------------------------TGGAAACCACC
ATCGTCGAT-----------------------------------------------------------------------
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>reverse_2320
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-------------------------------------------------------------------------------C
GAAACATGGGTGCCAAGTAG------------------------------------------------------------
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