>input_sequence_81574
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------ATGACGCTGAG---CAACAGCCGCCCTTCTCGGTTCCTCTGCCTCCTCGTGCTGCTGCTCCTCCTCACCGTCTT
CGCGCGGCGCTCCGGCGCCACCAGGCCCCTGCGGCAACCGGCAGCTGGCGGCGGTGGGGGTGTGGCCGCCGCGGCCGTGC
GGACGATCGCCCTCCCCGCCGCGGCCTTGACGAGGGACGCGGAGGAGGTCGTGCCGGTCGGGAAGCGGGTCGAGGCGCTG
CTCGGCATGAAGCCCAGGTCGAGAGCGCCGCCGTCGGGCCCCAGCAAACGAACCAACGACATCAAGAGCTGACGATCCGG
CGGCCTGCTC-----TGCTCGGCTCTTCTCTGATGCCGGTCGATCTTTTCTTCTTCTTCTTCTTCTCTTGTGCTAGCTCG
TTTAGGCTCTGA--------------------------------------------------------------------
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>chr5A_1_TraesCS5A01G147700
GGACTCATAGTTAAGTGGAAAATCAGTTTATTATACAACTAGGTAGGCACACTTGCAGGCTCTCTCTTTCCACGCAGAAG
TTAGTCAGCTTTGACCGGAACCGGACGCATTCACATAGC-----AGGTGCCAGCTACCTGCAGTTGACTCCACACCCACA
CATCCACCGCTATCCATTCCACCGTCTTTGCTCGGCCCCTCCCCACTCAACACGGTCTAAATTTC---------------
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-------------------------------TAGACGTACGTTGCACAATATCTTCATCATCAACCTAGCTAAATGGGTA
GAGCTAGCTAGTA-----AGAGTGTGCAGTGTTACCAGGAATCCACAGAGAT---AATCAGAACACACGCGCGCGCGCGC
GTCTGTTCCTTCAGT------GCCATGGCACTTTT-GATGAAC-------CTTTTTGCTGTGTGCATACAGTTAAAGTTG
TGAACTTTCATCTCCATTTGGACCCGCGGCCAGT----T-GAGCTGCCTCCAGATGGATATGCGGACGGACAGACAGGCA
AGCAAGCAAGCCAATACGCGTCCTTGTCGCCGGTAGCGCGGTGCATGACGCGCCAACTTCAATGCACGCACACACGCGGC
GCCACT--TAAATAACTTAACCAAAGTCATACT---CCATCTACCTTCCCTCACACGTCTGCACCGTCGTCGCGGCCTCT
CCTTTTCCGTACTTCTTTCAGCTAATCATAACTCGGATGCATCTTCCGTCCGAACGAAGGAAATGCTAAACTAGTAGCCA
TGCAATTGCTCGAGAGTTTTGGAGCAGCTTCGATCTGGATTTGGTTGACCAAAAGCACACGACATCCCATCCCGCCCTCC
TCCTCGTCGCGCGCGCACACACATTCCTCCCTATTTGACTTGCCCTCCAAGTTTGTCTCCTCCCACCGCGTCGC------
------------------------------CTCTCTCTATATATATCAA-------CCCTCTCCGTGCTCCGTCGGTCGC
ACCATTCCGGTCGTGATCCACACAAACAACCTCCGAATCAGATCAACTTCTCCTCTTCTCGTCGCACAAGATCAACGGCG
CACGCGATGACGCTGAG---CAACAGCCGCCCTTCTCGGTTCCTCTGCCTCCTCGTGCTGCTGCTCCTCCTCACCGTCTT
CGCGCGGCGCTCCGGCGCCACCAGGCCCCTGCGGCAACCGGCAGCTGGCGGCGGTGGGGGTGTGGCCGCCGCGGCCGTGC
GGACGATCGCCCTCCCCGCCGCGGCCTTGACGAGGGACGCGGAGGAGGTCGTGCCGGTCGGGAAGCGGGTCGAGGCGCTG
CTCGGCATGAAGCCCAGGTCGAGAGCGCCGCCGTCGGGCCCCAGCAAACGAACCAACGACATCAAGAGCTGACGATCCGG
CGGCCTGCTC-----TGCTCGGCTCTTCTCTGATGCCGGTCGATCTTTTCTTCTTCTTCTTCTTCTCTTGTGCTAGCTCG
TTTAGGCTCTGAGCAACCGACTGGTTGACCAGTCGTATACTAGATTGTTTCATTTGTTCTTTGTAGCTAGGTCTAGCGTG
CCTCCACAATGATTTTCTCTCGGGTATGCTAGTGTAAATTATTGTAACATATATTGCTGATATACTCCTGCTTGTAATGT
GATGTACACCACATATA--TACGTGCGAATTGTTTTCCAGCACCC-----TGCTGCATGCTTCGATAGCTTTTTCTTGA-
--------------------------------------------------------GATGTTTGGCTCATCAGACATCAG
TGATCAGTCACACTTTATCATCTCACAGGAATTAGTAGGA-TACTATAGTACAGTGTAGCGTAGTCCTAGATTCCTAGTA
TAGAAAAGAAAAAGGTAAGCTGGGAGATCTCAAGATGGTCTTGGATCAAGGGAAGGAAGAGGGAAGAGCGCGAGAGGCGC
GTAACTTTGACCGCTGACTTGCGACCCTTTCCCTGCGGGTCCGTGTCCCAGCTGCCCGCCTGCCTGCTACCGCCTGGCCG
TTCAACGCGTAACGATGCCTAC-------------------GCATGGAGTGTGAATGCTTCGCCGCGCGCGACAGCAAGA
GCGTAGCAAAGTTTGCGGGAGACGCGTGAAGCCGTGAACGTGCCAGCTCGTTGCTTCCGCGCGGTACGCCACGCGTTTCT
TCACCGGCGTGTCCAACAAACAGTCCGTGTCCCCGAGCGTGGGCTCCTGTTTTTCCAACCAAACGCGGGTAAGAGCATCT
CCAGCCGTCCGTCCCCCCGGAGGAGGCATAAAAATCGCCGCCTAAGGGCGAGCCGGCGGTAGAATAGGCGCTAGGGGTGG
TTGGGCATCCAGCTGTCGCTCTCAGGCGCCGATATCGGCCCATTCGCGGCTGCTTTTCGGCCCAGATAAATAGAAAATGG
CCCGATATCGGCGAGAAACGGCTTATATTCGGCGTGGTTCGGTGTTGAATTGTCAACATAAATAAATTTTTTATCACATG
GTTCATCACAGAAAATCAAATAATTCAATAAATAGTGCAACGACAAATAGTTCAAT
>chr5B_32
-------------------------------TATACAACTAGGTAGGCAAACTTGCAGGCTCTCTCTTTCCACGCAGAAG
TTAGTCAGCTTTGACCGGAACCGGAAGCATTCACATAGTACTTTAGGTGCCAGCTACCCGCAGTTGACTCCACACACACA
CATC----------CACCGTC------TTGCTCGGCCCCTCCCCACTCAACACGGTCTAAATTTC---------------
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-------------------------------TAGACGTACGATGCACAATATCTTCATCATCAACCTAGCTAAATGGGTA
GAGCTAGCTAGTACTAAAAGAGTGTGCAGTGTCACCTGGAATCCACAGGAGGGACAGTCAGAAGATACACACACATGCAC
GTCTGTGCCTTCAGTCTCAGTGGTATGGCTCTTTCTGATGAACCTCTTGGCTTTTGGCTGTGTGCCTACAGTTAAAGTTT
TGAACTTTCATCTCCATTTGGACCTGCGGCTAGGCTAGT-GAGCTGCCTCCAGATGGATATTCA----GACAGGCAGGCA
AGCAAGCCAGCCAATACGCGTCCTTGTCGTGGGTGGCGCGGTGCATGACGCGCCAACTTCAATGCACGCACACACGCGGC
GTCACTAATAAATAACTTAACCAAAGTCATACACTACCATCTATCTTTCCTCACACGCCTGCACCGTCTCC---------
---TTTTCCTACTTGTTTCAGCTAATCATAACTCGGACGCATCTTCCGTCCGAACGAAGGAAAGGCTAAACTAGTAGCCA
TGCAATTGCTCGAGAGTTTTGAAGCAGCTTCGATCTCGATTTGGTTGACCAAAAGCACACGACATCCCATCCCGCCC---
TCCTCGTCGCGCGCGCACACACATTCCTCCCTATTTGACTTGCCCTCCAAGTTTGTCTCCTCCCACCGCGTCCA------
-----------------CGGCTCTGCCTCTCTC--------------TATATCAACCCCTCTCCGTGCTCCGTCGGTCGC
ACCATTCCCGTCGTCATCCACACAAACAACCTCCGAATCAAAACAAGTCCTCCCCTTCTCGCTGCACAAGATCAATGGCG
CACGCGATGACGCTCAACAACAACAGCCGCGCTCCACGTTTCCTCTGCCTCCTCGTGCTT---CTCCTCCTGACCGTCTT
CACGCGGCGCTCCGGCGCCACCAGGCCCCTGCGGCAACCAGCCGCCGGCGGTGCTGGTGCTGGGCCCGCGGCGGCCGTGC
GGACGATCGCTCTCCCCGCCGCGGCCTTGTCGAGGGACGCGGAGGAGGTCGTGCCGGTCGGGAAGCGGGTCGAGGCGCTG
CTCGGCATGAAACCCGGGTCGCGAGCGCCGCCGTCGGGCCCCAGCAAACGAACCAACGACATCAAGAGCTGACGATCCAG
CCGCCTGCTC--CTCTGCGCTGCTCTTCTCTGATGCCGATCGATCTTTTTG-----TTCTTCTTCTCTTGTGCTAGCTCG
TTTAGGTTCCGAGAAACCGACTGGTTGACCAGTCGTATACTAGATTGTTTCATTTGTTCTTTGTAGCTAGGTCTAGTGTG
CCTCCACAATGATTTTCTCTCAGGTATGCTAGTGTAAATTAATGTAAC--ATATTGCTGATATACTCCAGCTTGTAATGT
GATGTACACATATATACTGTACGTGCGAATTGTTTTCCAGCACACTGCCGTGCTGCATGCTTCAATAGCTTTTTCTTGAT
GGGAAATTGCATTTGACATAGTATTTCAATATAATATAAACATAATAATGCGTTGAGATGTTTGGTTCATCAG-------
TGATCTGTCACACTTTATCATCTCACAGGAATTAGTAGGAGTACTATAGTACAGTGTAGTGTAGC--------CCTAGTA
TAGAAAAGAAAA-GGTAAGCTGGGAGATCTCAAGATGATCTTGGATCAAGGGAA-------GGAAGAGCGCGAGAGGCGC
ATAGTTTTGACCGCTGACTTGCGACCCTTTCCCTGCGGGTCCGTGTCCCAGCTGCCCGCCTGCCTGCTACCGCCGGGCAG
TTCAACGCGTAACGATGCCTAC---GTAGGAGCACGGGTCAGCATGGAGTGTGAATGCTTCGCCGCGCGCGGCAAGAAAA
GCGTAGC-AAGTTTGGGAGAGACGCGTGAAGCCGTGAACGTGCCAGCTCGTTGCTTCCGCGCGGTACGCCACGCGTTTCT
TCACCGGCGTGTCCAACAGG-AGTCCGTGT-CCCGAGCGTGGGCTGCTGTTTTT--------------------------
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>chr5D_43
------------------------------------------GTAGGCAAACTTGCGGGCTCTCTCTTTCCTCGCAGAAG
TTAGTCAGCTTTGACCGGAACCGGAAGTATTCACATAGTA-----GGTGCTAGCCACCTGCAGTTGACTCCACACCAGCA
CATCCACCGCTATCCACCGTC------TTGCTCGG----------CTCAACACAGTTTAAATTCTTAGAGATTTAAAAAA
AAAACTTAAATACGGCGCAAACACGGCTCAAATTTAACGCAAACATCGGCGAGTTCGTTCAAATTTAAACATATTTTACT
AAAAAGAAAAAAAAACTACTAGAGGCTGCTCCTCGCCGTCTCCCTCGCCGCCCGCCGCCCGCCCTTGCAGTTCTACATGC
CGAGGAGGCTGTAGAACCGTGTGTAGTCGCCGCCGCCGTCGTCGTCGTTGTCGCCGCCGCCGCCGTCCCTGCTGCATCCT
TCCCCTGGTTGACGCGGCGGGTTGGACGGTCCGGGGGCGTCCTGGTCGTCATCGCTGTCGAGGATCACGACGTCGTGCTC
GTCCTCGCGCCCACGTTTGCGGGCTTCTATCTCCTCCAGGGCCCGGCACTGCCGGACCATCTCGTCGCGGCAGTAGTCGT
CCGGCCTTCACTGCGCCGCCCGTGAGGCATCAATGGAGGCTGACCGGCGCGGCAGCGCGCGCAGCTTTGGCATTGATTCG
CCGCGGGGAACGAGGCGATGAGGACGACGAAGCGGTGAGAAGAGAGTCGAGTCGCTGGCAAGGGGGGCCTGCGGCTCTTC
GCGCCAAAAACGATTCGCCCGGCGCCCCCGAGCGCCCCCAGCGCGCCGGGTTCGGGTTGGGTCCGCCGGCGCCAATTTCG
GCCCGAGCCGGCGAAAACTGGGCTCTTGGGGGCGCGACTGGGCCTTTTTTTACGCCGGCGACCGAAAAATCGCCTGGGGG
GCCTTGTTGGGGGCGCGGCTGAAGATGCTCTTAGACGTACGATGCAAAATTTCT---TCATCAACCTAGCTAAATTTGTA
GAGCTAG-------TAAAAGAGCGTGCAGTGTTACCAGGAATCCACATGGAC---AATCAGA----ACACACACGCGCGC
GTCTGTTCCTTTCCTTG-AGTGCCATGGCCCTTTTTGATGAAC-------CTTTTTGCTGTGTGTATACAGTTAAAGTTG
TGAGCTTTCATCTCCATTTGGACCTGCGGCTAGGCTAGTTGAGCTGCCTCCAGATGGATATGTATATATACAGGCAGGCA
AGCAAGCCAGCCAATACGCGTCCTTGTCGTGGGTAGCGCGGTGCATGACGCGCCAACTTCAATGCACGCACACACGCGGC
GCCACT--TAAATAACTTAATCAAAGTCATACT---CCATCTACCTTCCCTCACACGTCTGCACCGTCGTCGCGGCCTCT
ACTTTTTCCTACTTCTTTCAGCTAATCATAACTCGGATGCATCTTCCGTCCGAACGAAGGAAAGGCTAAACAAGTAGCCA
TGCAATTGCTCGAGAGTTTTGGAGCAGCTTCGATCTCGATTTGGTTGACCAAAAGCACACGACATCCCATCCCGCCC---
TCCTCGTCGCGCGCGCGCACACATTCCTCCCTATTTGACTTGCCCTCCAAGTTTGTCTCCTCCCACCGCGTCCGCGTCCA
CGACTCCGCGCTGCGCTCGCCTCTCTCTCTCTCTCTCTATATATATATATATCAACCCCTCTCCGTGCTCCGTCCGTCGC
ACCATTCCCGTCGTGATCCACACAAGCAACCTCCAAATCAAATCAACTTCTCCTCTTCTCGTCGCACAAGATCAACGGCG
CACGCGATGATGCTGAGCAACAGCAGCCGCGCTCCACGCTTCCTCTGCCTCCTCGTGCTGCTGCTCCTCCTCACCGTCTT
CGCGCGGCGCTCCGGCGCCACCAGGCCCCTGCGGCAACCGGGCGCCGCCGGCGGTGGTGGTGTGGCCGCCGCGGCCGTGC
GGACGATCGCTCTCCCCGCCGCGGCCTTGACGAGGGACGCGGAGGTGCTCGTGCCGGCCGGGAAGCGGGTCGAGGCGCTG
CTCGGCATGAAGCCCAGGTCGAGAGCGCCGCCGTCGGGCCCCAGCAAACGAACCAACGACATCAAGAGCTGACGATCCAG
CTGCCTGCTCTGCTCTGCTCGGCTCTTCTCTGATGCCGATCGACCTTTTTTCTT--TTCTTTTTCTCTTGGGGTAGCTCG
TTTAGGTTCCGAGGAACCGACTGGTTGACCAGTCGTATACTAGATTGTTTCATTTGTTCTTTGTAGCTAGGTCTAGTGTG
CCTCCACAATGATTTTCTCTCGGGTATGCTAGTGTAAATTAATGTAAC--ATATTGCTGATATACTCCAGCTTGTAATGT
GATGTACACATATATACTGTACGTGCGAATTGTTTTCCAGCACGC-----TGCTGCATGCTTCAATAGCTTTTTCTTGAT
GGGATATTACATTTGACATAGTATCTCAATACAATGAACATAGTAATACA------------------------------
TGATCAGTCACACTTTATCATCTCACAGGAATTAGTAGGA-TACCATAGTACGGTGTAGTGTAGT--------CCTAGTA
TAGAAAAGAAAA-GGTAAGTTGGGAGATCTCGAGATGATCTTGGATCAAGGGAAGGAAG-GGGAAGAGCGCGAGAGGCGC
GTAAG-TTGACCGCTGACTTGCGACCCTTTCCCTGCGGGTCCGTGCCCCGGCTGCCCGTCTGCCTGCTACCGCCGGGCGG
TTCAACGCGTAACGATGCCTACTCGGTAGGAGCACGGGT---------------------------------CAGCAAGA
GCGTAGCAAAGTTTGCAAGAGACGCGTGAAGCCGCGAACGTGCCAGCTCGTTGCTTCCGCGCGGCACGCCACGCGTTTCT
TCACCGGCG-----------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------S------------------------------
-------------------------S------------S-----------------------------------------
----------------SSSSSSSSSSS-----------------------------------------------------
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-----------------------------------------S--------------------------------------
------------------------------------------------S--S-----------S-S--S-S-S-------
-----------------------------S--------------------------------------------------
------------------------S-----S--S-----------------------------SS-SS-----S------
-------S---------------------SS-------------------------------------------------
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S-----S-S------------------------------------------------------S----------------
------------------------------------S----------------------------------------SSS
------------------------------------------------------------------------SS------
----------------------------------------------SS--------------------------------
--------S-------------------------------S---------------------------------------
------------------------------S--S-S--S-----------------------------------------
------------------------------------------S--S-----------S----------------------
----------S---------------------------------------------------------------------
------------------------------------------------------------------------------S-
-S------------------------------------S----------S-SS-SS------------------------
------S--S---S--------------------------------------------------------------S---
-----------------------------------------S------SS------------------S-----------
---------SSSSSSSS--------------------------S-------------------S----------------
-----------------------------------------------------------------S-------SSSSSSS
-----------------------------------------------------------S-----SSSSSSSS-------
------------S------------------------S---------------------S--------------------
----S---------------------------------------------------------------------S---S-
-----------------------------------------------------------------------S--------
-----------------S--------------------------------------------------------------
------------------SSS---------S--------------S--------SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1264
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--------------------------------------------TGCCTCCAGATGGATATGCG----------------
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>reverse_3205
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----ATATCGGCGAGAAACGGCTT--------------------------------------------------------
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