>input_sequence_81554
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-------------------------------------------------------------------------------A
TGGGCAACTGCCTGAACAAGGCGTCTACGCAGCAGCAGCGCGAGATGCGGCGGCGGCACGGCCACGGCGAGCGGGTGGCG
CCGGAGGAGAGGGAGGAGCAGGAGG---AGCTCAGGAGCATCGGCCAGGTGCTGCTGCAGGAGGAAGACGA---GGAGGA
GGAGGAGGAGGAGGTCCCGGCGTCCGCGTCGCCGGCGGCCGGGATGAAGGTGAAAGTGGTCCTGACGAGGGCGGAGCTGG
AGTGGCTCATGGCGCAGCTCAAGAGCGGCGAGCAGCGCCTCGAGGACGTGCTCCGCCAGATGGGCAACGCCCGGGCCGAC
GACGACAAGCCGCCGCGCGCCGACGCCTGGCGCCCGCGCCTCGAGTGCATCCTCGAGTGCCCCGAGGCCGCCGACGCCAC
CTAG----------------------------------------------------------------------------
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>chr7B_1_TraesCS7B01G232900
CAAATGGAAGGTGCACGGGCCCTTGTATCGGTGCGTGTTCACGTGCAGTAGCTAGCCCCGCGTCGCTCGGCGTCCCTCCC
CTACGGCCATGGGCCCTATCC---------------AGCACGCCACCGCCACGTACCAC-------TGCTAGCGACCTGC
ATATCGACGGAGGCGTCATCCTTGCCTATGATATGAT---------ATCAGTGTCCAAATAATGTGGCTGCGGGGCTGCG
GCGCGAGGAAACATAAACCTTTACCACAAACCGTTGGCATCAAACAACAGCCCAGTATCCAGATTTGATCGAACCTGCTG
CTCTGGACGGTTGCGCGGACGTAGCGCGCGAGGGGCCCCGGCGTAGGGCCGTGCATTGGTGCATGATCGATCGATGACAG
-CCGGCAGATACGGTGCCGATACGGTCCACCCGGCCACGGTGCCGTGCGCCGATCCGTGGTCGCGGTCGAGGCCCGCCGC
GCACGCGTGCGTCGGAAG---------------CATGCCATGCCATGCCATGCATGATGCCACCG---------------
GCACGCTCGCTGGCCGCATCATGCCGGTGGCCC-----GGCAAGGGCACCGCGAGCCCACATGCCCGGAGATCTCGTCAC
CAGTGACTGTCTGTCCCGCTCC-------TAGCTTTGG----CAAGCACGCACACATGCGACCGACCAAACCAGACCGAA
AAGCAGAGAGGAGGAAGCAGCGGCAAAAGCGAAGGCAAAAGGGCCTCTGCCTGCTGTTGAGGGGCCACGCACCGAACCCG
AACCACAC-----CACACAGAGGCCGCACCACACCACACCACACCTATCCCGTGACCCCGGCCCGGACCCCACCATGTGC
ATGCAGCTTTCGTTGCCCTTCGTGGGCCCCACGGTGCCCGCACACCACGCACCAACCCAATGCTTCCTTCCGAGCTAG--
-------------TGGCTGGCTACGGCCACCCTCGTGCCTGGTCGTTATATAACACCCCGCGCCTGCGCTCCTGCCACCT
CTTAGCAAAAGCGAGCC-----ACTTACCAAAGCTACTCTGTCTGCCCC-ACCACCTTGT---------------CGCCA
TGGGCAACTGCCTGAACAAGGCGTCTACGCAGCAGCAGCGCGAGATGCGGCGGCGGCACGGCCACGGCGAGCGGGTGGCG
CCGGAGGAGAGGGAGGAGCAGGAGG---AGCTCAGGAGCATCGGCCAGGTGCTGCTGCAGGAGGAAGACGA---GGAGGA
GGAGGAGGAGGAGGTCCCGGCGTCCGCGTCGCCGGCGGCCGGGATGAAGGTGAAAGTGGTCCTGACGAGGGCGGAGCTGG
AGTGGCTCATGGCGCAGCTCAAGAGCGGCGAGCAGCGCCTCGAGGACGTGCTCCGCCAGATGGGCAACGCCCGGGCCGAC
GACGACAAGCCGCCGCGCGCCGACGCCTGGCGCCCGCGCCTCGAGTGCATCCTCGAGTGCCCCGAGGCCGCCGACGCCAC
CTAGCTGA-CAACCTACACGCCGTCTGCTC--------------TCGATCTCTCCTCCCCGGCCACCGT----GATCAGA
GCTTGGTCTCCTCCATGCATGGGCTACTAGCTTTCTTGCTCAGATCCGTCCGT-----------GTGCATCGTGTGATCC
ATGGAGAGGCTTCTTGTTTTTCTGTTTCTCTCCAAAGGATGGATCCATGGAGTGGT---GCTTGAGTTAGGATGAACACC
AACTGTACTATGTAGTAGCCTGTTAGAGCAGTAGTAGCTT--GATTTCTCACTGGTGA-------------------TGT
ACTCGTATCTGGGTTTTGCTCCGTCCGCTTGTTTTGG------------TTTTTCCTTTCTGGTGTTGTTTGTAAATAGT
GTGGCCTCAGATCAAATGGCAACGTACCGTCTGCTGCAGTTTTGAAC--CGGATCGGATCGGATCAGCCGTGGCAATTTT
AGCTCACTTTTTTTTGAACCTGATT--------AACCTTGTATACATCCACATTCGCTAC----CATATTTCCCGCATAC
TAAATACCGGTGCATGATTAAGTTTGTGAGTGGTGAAGCTCTACTAGTCTACATTCCGACAGTGTATGCACAACCAGAAC
AACTTGGATCGAACGACCGGAGCAGGGTTAAAGTAGCAACGCCAAAGTGCTAGTATTTCCGGCAACAAAAAAAGTGCACA
AAAGTGCTATAGAGCCGCTACATAGCTGTAGCATATTCTCATCCCATGGAAGCAAAAGCAGCAACCTTCGGTCAATTCTT
GGCC-AGGTTAACTTGCTCCCGCCGGTCGATGCATGGTTAACATACTAGTACTAACAATGAAGGCGGTCAAACTTGTGCA
CATGCTTAAGCGTGATAACCTCGCATCATAGATGGCGTCCAAGAAAGCTGGTGGACGTGATGCTACGGCTCGCCAGCTTT
TTCAACCACGAGAGCGACGCCTCTTTGCGGGGTCGCTGCTCTGACTAACCGATCCACGTATGACCCGAACAAAACCACGC
ATTTT---CATCCATCACCTACGTTTCCAACTAGTTTGCCCGTTAGAT
>chr7D_1
CAAACGGAAGGTGCACGGGCCCTTGTACCAGTGCGTGTTCACGTGCAGCAGC----------TCGCTCCGCGTCCCTCCC
CTACGGCCATGGGCCCTCTCCAGCACGCGAAGGCGTAGCACGCCACCGCCACGTACCACCTGCTGCTGCTAGCGACCTGC
ATGTCGACGGAGGCGTCATCTTTGCCGATATGATTGATATCATATGATCAGCGTCCAAATTATGTGGCTGCGGGCCTGCG
GCGCGACGAAACATAAACCTTTACCACAAACCGTTGGCATCAAACGACAGTCCAGTATCCAGATTTGATCGAACCTGCGG
CCCTGGACGGTTGCGCGGACGTAGCGCGCGAGGGGCCCCGGCGTAGGCCCGTGCATTGGTGCATGATCGGTTGACGACAG
CCCGGCAGATACGGTGCCGAT---------CCGGCCACGGTGCCGTGCACCGATCTGTGGTCGCGGTCGAG----GCCGC
GCATGCGTGCGTCGGAAG---------------CATGCCATGC----------ATGATGCCACCGGCACCGGGCGCGCGC
GCACGCTCGCTGGCCGCATCATGCCGGTGGCCCAGCCCGGCAAGGGCACCGCGAGCCCACATGCCCGGAGATCTCGTCAC
CAGTGACTGTCTGTCCCGCTCCCACGGAATAGCTTTGG----CAAGCACGCACACATGCGACCGACCAAACCAGACCGAA
AAGCAGAGAGGAGGAAGCAGCGGCAAAAGCGAAGGCAAAAGAGCCTCTGCCTGCTGTTGAGGGGCCACGCACCGAACCAC
AGTACCACACCCACACACAGAGGCCGCACCACACCATGCCACACCTATCCCGCGA-CCCCGGCCGGACCCCACCATGTGC
ATGCAGCATTCCTTGCCCTCCGCGGGCCCCACGGCTCCCGCACACCACGCACCAACCCAACGCTGGCTTCC------GAG
CTAGAGCTGCTAGTGGCTGGCTACGGCCACCCTCGTGCCTGGTCGTTATATAACACCCCGCGCCTGCGCTCCTGCCACCT
CTTAGCAAAAGCGAGGCACTCTACTTACCAAAGCTACTCTGCCCGCCCCCACCACCTTGTCGATCGGCGA----GCGCCA
TGGGCAACTGCCTGAACAAGGCGTCTACGCAGCAGCAGCGCGAGATGCGGCGGCGGCACGGCCACGGCGAGCGGGTGGCG
CCGGAGGAGAGGGAGGAGGAGGAGGAGCAGCTCAGGAGCATCGGCCAGGTGCTGCTGCAGGAGGAAGAGGAGGAGGAGGA
GGAGGCG---------CCGGCGTCCGCGTCGCCGGCGGCCGGGATGAAGGTGAAGGTGGTCCTGACGAGGGCGGAGCTGG
AGTGGCTCATGGCGCAGCTCAAGAGCGGCGAGCAGCGCCTCGAGGACGTCCTCCGCCAGATGGGCAACGCCCGCGCCGAC
GACTACAAGCCGCCGCGCGCCGACGCCTGGCGCCCGCGCCTCGAGTGCATCCTCGAGTGCCCCGAGGCCGCCGACGCCAC
CTAGCTCCTCAACGTACACACGGCGCCCGTCCGTCCGCTCTCGATCGATCTCCCCTCCCCGGTCACCGCGCGCGATCAGA
GCTTGATCTCCTCCATGA----GCTAGTAGCTTTCTTGCTTAGATCCGTCCGTCTCTGTGCATGGTCCATGGTGTGATCC
ATGGAGAGGCTTCTTGTTTTTCTGTTTCTCTCCAAAGGATCCATGA----AGTGGT---GCTTGAGTTAGGATGAACACC
AACTGTACTATGTAGCCTGTTAGAGCA---GTAGTAGCTTTTGATTTCTCACTGGTGA-------------------TGT
ACTCGTATCTGGGTTTTGCTCCGTCCGCTTGCTTTGG------------TTTTGCCTTTCTGGTGTTGTTTGTAAATAGC
GTGTGGCCAC----------------------------------------------------------------------
-------TTCGGTGGCGCAATCCACCCTTTTTAAACCTTGTATACATCCACATTCGCTACTTACCATATTTCCCGCATAT
TAAATACTGGCGCATGATTAAGTTTGTGAGTGGTGAAGCTCTAGC---CTACATTCCGACAGTGTATGCACAACCAGAAC
AACTTGGATCGAACGACCGGAGCAGGGTTAAAGTAGC---GCCAAAGTGT---TATTTCCCGCAACAAAAAAAGTGCACA
AGAGTGCTATAGAGCCGCTATATAGCTGTAGCATATTCTCAT-----GGAAGCAAAAGCAGCAACCTTTGGTCAATTCTT
GGCCCAGGTTAATTTCCTCCCGCCGGTCGATGCATGGGTTAACA-----TACTAACAATCGAGGCGGTCAAACTTGTGCA
CATGCTTAAGCGTGATAACCTCGCATCATAGATGGCGTCCAAGAAAGCTGGTGGACGTGATGCTACGGCTCACCAGCTTT
TTCAACCACGAGAGCGACGCCTCTTTGCGGGGTCGCCGCTCTGACTAATCGATCCACGTATGCCCGAACAAAAACCACGC
ATTTCATCCATGCATCACCTATGTTTCCAACTAGTTTGCCCGTTAGAT
>chr7A_405
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------------------------------------ACGGTGCCGTGCGCCGATCCGTGGTCGCGGTCGAGGCCCGCCGC
GCATGCGTGCGCCGGAAGCATGCCATGCCGTGCCATGCCATGC----------ATGATGCCACCGGCACCGGGCGCGCGC
GCACGCTCGCTGGCCGCATCATGCCGGTGGCCC-----GGCAAGGGCACCGCGAGCCCACATGCCCGGAGATCTCGTCAC
CAGTGACTGTCTGTCCCGCTCCCACGGAATAGCTTTGGCAAGCACGCACACACACATGCGACCGACCGAACCAGACCGAA
AAGCAGAGGGGAGGAAGCAGCGGCAAAAACCAAGGCAAAAGGGCCTCTGCCTGCTGTTGAGGGGCCACGCACCGAACCAC
A----------------CAGAGGCCGCACCACACCATGCCACACCAATCCCGCGA-CCCCGGCCGGGCCCCGCCATGTGC
ATGCAGCATTCGTTGGA------GGGCCCCACGGCGCCCGCACACCACGCACCAACCCAACGCCTCCTTCCGAGCTAGAG
CTAGAGCTGCTAGTGGCTGGCTACGGCCACCCTCGTGCCCGGTCGTTATATAACACCCCGCGCCTGCGCTCCTGCCACCT
CTTAGCAAAAGCGAGGCACTCTACTTACCGAAGCTACTCCGCCTGCCCCCACCACCTTGTCGATCGGCGAGCGAGCGCCA
TGGGCAACTGCCTGAACAAGGCGTCTACGCAGCAG---------------CGGCGGCGCGGCCACGGCGAGAGGGTGGCG
CCGGAGGTGAGGGAGGAGGAGGAGG---AGCTCAGGAGCATCGGCCAGGTGCTGCTGCAGGAGGAAGAGGA---GGAGGA
GGAGGTA---------CCGGCGTCCGCGTCGCAGGCGGCCGGGATGAAGGTGAAGGTGGTCCTGACGAGGGCGGAGCTGG
AGTGGCTCATGGCGCAGCTCAAGAGCGGCGAGCAGCGCCTCGAGGACGTCCTCCGCCAGATGGGCAACGCCCGCGCCGAC
GACGACAAGCCGCCGCGCGCCGACGCCTGGCGCCCGCGCCTCGAGTGCATCCTCGAGTGCCCCGAGCCTGCCGACGCCAC
CTAGCG---CAACCTACACACGGCGCCCAGCCGGCCGTTCTCTCTTCTATCCG------------------GCGATCAGA
GCTTGATCTCCTCCATGGTG----TACTAGCTTTCTTGCTCAGATCCGCCCGT-----------GTGCATGCTGTGATCC
ATGGAGAGGCTTCTTGTTTTTGTGTTTCTCTCCAAAGGATGGATCCATGGATCGGAGTGGCTTGATCTAGGATGAACACC
AACTGTACTATGTAGCCCGTTAGAGCAGTAGCAGTAGCTT--GATCTCTCACCTCTCACTGGTGTTTGTTGTGCACTTGT
GCTCGTATGTGGGTTTTGCTCTGTCCGCTTGTTTTGGTTTTTCTTTTTCTTTTTCCTTTTCTGTTTTGTTTGTAAATAGT
GTGGCCTCAAACCAAATGGCAACGTACCGTCCGCTGCAGTTTTGCATCTCGGATCGGACATGATCAGATGTGACAATTTT
AGCTCTTTTTGGTGGCGTAATCTACCCTTTTTTATT-TTGTATACATCCACATTCGCTAC-TACCATATTTCCCGCATAT
TAAATAC-------------------------------------------------------------------------
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>SNPs
----S----------------------S-S------------------S---SSSSSSSSSS------S-----------
-----------------S--------------------------------------------------------------
--S-----------------S-----S--SSS--SSS--------------S--------S-------------S-----
------S--------------------------------------S----S---------------------------S-
-S---------------------------------------------S---------------------S-S--S-----
---------------------SSSSSSSSS--------------------------------------------------
---S---------------------------------------SSSSSSSSSS---------------------------
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------------------------------------------------------------------------------SS
-SSSS-------------------------------SS--------------S--S---S-S------------------
-------S-----------S--S-----------S-------------------------S-------------------
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---------------S-------------------------S--------------------------------------
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------------------S-------------------------------------------------S-----------
-----S-SSSSSSSSS--------------------------------------S-------------------------
-------------------------------------------------S-----------------------S------
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------SS-----------S-S-SSSS-SS----------------------S---------S-----S-----------
-----S-----------SSSSS------------------------------------------------S---------
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---------------SSSSS-SSSSS--S---------------------------------------------------
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---------S-S-------------------S------------S-S-----------SSS------SS---S-------
-----SS---SS-SSSSSSS-SSSS------------------------------------------------------S
-------S--S--------------------------------SSSSS--------------------------------
-------------------------------------SSS---------SSSS-------S-------------------
-S------------------S---------------------SSSSS---------------------S-----------
------------S--S---------------------S-S-SSSSSSSS----------SS-------------------
-----------------------------------------------------------------------S--------
------------------------------------S-----------S-------------S--SS-SS----------
----S------S---------S--------------------------
>forward_235
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-------------------------------------------------------CAAATAATGTGGCTGCGGGG-----
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>reverse_1546
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-------------------------TGCTCTCGATCTCTCCTCCC-----------------------------------
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