>input_sequence_81545
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----------------------------------------ATGAGAGCAAGAAGGAAGGCAAACAGCCTTGCGGCTAAAA
TGGCT---------------------------------------------------------------------------
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------GGTGAGGAGGAGGTGCGGGTGATAGAGTCCAGCTTTGTGATGCCGGCCAGCGACACACCGAGGAAAGCGCTGCG
GCTCTCGCCACTCGAGCTCATGCTAGCCAACAGAGGTCTCACTCCGGTTGTCCGCTTCTACCGGCCGCGT----------
--ACCACCGACGACGCCTTCTTTGATGTGATCAGGTTGAAGACGGCGTTGGGCAAGGCCCTCGTTGCCTTCTACCCTATG
GCCGACCGCCTCAGGGCTGACGCCGATGGCAGGTTAGAGATCGACTGCAACAACAAGGGTGTGCTC---TTCGTCGTCGC
CCACTCTCGTCTTACAAATTATGACTTCAGTGACTCTC-GCCATCACCAAGGCTAA------------------------
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>chr6B_1_TraesCS6B01G030200
GCCCGGCGCTCGCCCATCTCATCCCGCACGCAAACTGATTTTTTTCTTTCTGTTTTGCAAATTAAGCTTTACCGAGTGCT
ATAAACAGAATACCGGGGTTATATGTAAACTGTGCTGCACGGCCCACAGTTTATATAAACCGTGTGTCCGTCGGCCCTCA
GCTTACATAGACCGACACGTGGCATTGCCGTTAATGCCTGACTTCCGTTATATATAAAC---------------------
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----------------------------------------------TGTGTGTCTTGTTGGCCCTCGTCTTACATAGAAA
TACT--------ATATAAACCGAGTGTTTCTCTTGTGGCTCTCGGTTTACCCTTGATAAGCCGGTCCC-AGTAAGCCGTG
TCTTGTAAGCCGGGAAAAACACACAGCTTATATATAAACCCAGTGCAAATCGGCATAAGCCGAGTGTTTTTGGTACACGG
CTTACAATTTTTTTTTGTAGTGATACATATATAGACACCTGATTTCCAGTTTCACTATGCAGTACAGTGTACACACACAC
AC--ATCTCTTTGTGGTTCTATACGCATGTGTGTAGGGTTTTTT-ATTTTTTATTTTTGAAGGAAGGTTTACTAGAGTTA
TCAGATGGAGATGGGCCACCAAACCATGACCCATCAATAGGAGACAGCAGCATGCAT----------GGTATCAATGTAT
CATACAGCTGTAGGGAAAGAAAGAAAACAACCAGATCTGCTATCGCCATGAATATCTCCATCTACTACTTTTGTCTACCT
TC------------------------------------------------------------------------------
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-------------------------------------------------------------------------AGGATTG
GAGATCACTGACCGATCACATGTCCAAAGCCATTCTATTATCAGTGCTGCTATGCACACGATGTTGACGGACGATTTGTG
GACGACAACACTTATCAGATCGTCCATGCATAGCATCAAACCGTAGTTGACGGCTGGATTGCCCGTCGTCTCACTGTCGT
GCAAGCACGTTGTCGTCCACACAGCAGTTTCGTTCTATTATATGATTGCTGCTACGTGCCCATTTCTAACACACTAGGAA
TCCCAGTAGCAAAAGAAGAAAGAAAGAGAACAGGAGGGAAATGAGAGCAAGAAGGAAGGCAAACAGCCTTGCGGCTAAAA
TGGCT---------------------------------------------------------------------------
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------GGTGAGGAGGAGGTGCGGGTGATAGAGTCCAGCTTTGTGATGCCGGCCAGCGACACACCGAGGAAAGCGCTGCG
GCTCTCGCCACTCGAGCTCATGCTAGCCAACAGAGGTCTCACTCCGGTTGTCCGCTTCTACCGGCCGCGT----------
--ACCACCGACGACGCCTTCTTTGATGTGATCAGGTTGAAGACGGCGTTGGGCAAGGCCCTCGTTGCCTTCTACCCTATG
GCCGACCGCCTCAGGGCTGACGCCGATGGCAGGTTAGAGATCGACTGCAACAACAAGGGTGTGCTC---TTCGTCGTCGC
CCACTCTCGTCTTACAAATTATGACTTCAGTGACTCTC-GCCATCACCAAGGCTAAGGAGGTTGTTTGTTCCCCACGTCG
ATGACCCGGCCTACATCGTGTGCGCCACCCAGGTCTGATTCTTTCTATATTACTACTTTCTAATCAAGTCAAGTATAATA
CAGTAGTACACTATATTTGGTTTTTGGTCAGTTTTCCTAGTTACTGGTTGCTCCAGAAAAAAAGTAGAAATAGAAACATA
TCATTCATATAACATGTGCCACAAATCCATCTATGTAGGTGACATTCATCAACTGTGGTGGAGTGGTCTTAGGGACGGCA
ACACAACATGGAGTTGTGGACGGCACTGCCGCATTACACTTCTTGCATGCATGGGCAGCATTCTCCAGAGAAGGCGACCG
AGCTGTAGTGAGGATCCCTTACCTTGACCGCACCCTCCTGTGTGCACTCGACCCACATGTTGTTCGTCCGGACGCCCTCT
CCATATTTTGCCCCAAGATAATCCTATCCCAGGCGTCAGGTCTTGCTGTCGTCAATGAGGTTCTCATCCATTCTATACCC
ATTAAGCTTTGCTAGTCTTGCCATGATAATGGAAATGCCGAGTCCTCGTGGCTCACAGATTACTACAACAACAGTTGCAG
GTACAGGCAATACGATGATCTGATGCGAGAGTGATGATTGATTGTTTGGAGTTTTTCTGCTTTGATCAGGAGTAGGTTCC
TCATCGGCAGTCTGGGCTAGTAGGGTGGATGTCGTTTGAGCTTTTCATTTGTGTTTCATCAATAGTCGGATGTTGCTCTA
TCCTTGGTGGGGCCTTCGATTTCCTCTCGGATAGAATCACATATTGGGCATGACAATCATCACGGGACCTGCGGACGCGT
GCGCCACCGACGGGCCAGGTCGGTCGCGTGGCATAGATGAGGCGGATCGCGGAGGCGAGCGGGTGATCAAGCCGATCGCG
CGTGAGGTCGGGGATGCCGCTCGGTGGAGGCGTGATGGCGACGGAGTCCGAGATGAAACCGGCGACGACAGATGGCGCGA
CACGACATGCGGACGA
>chr6B_1
GCCCGGCGCTCGCCCATCTCATCCCGCACGCAAACTGATT--TTTTTTTCTGTTTTGCAAATTAAGCTTTACCGAGTGCT
ATAAACAGAATACCCGGGTTATATGTAAACTGTGCTGCTCGGCCCACAGTTTATATAAACCGTGTGTCCGTCGGCCCTCA
GCTTACATAGACCAACACGTGGCATTGCCGTTAATGCCTGACTTCCATTATATATAAATTGTGTGTCTTGTTTTTTTTTT
TGCGCGAAAACTTTCGATCTATTCATCAACTGTCAAGGTAGTACAAAAAACACTAGAAGTAAAAATTACATCCAGGTCTG
TAGACCACCTAGCGACGACTACAATCTCTGGAGCGAGCCGAAGGCGCGCCGCCGTCATCGCCCCTCCCTCGTCGGAGCCG
GGCAAACATTGTTGTAGTAGACAGTCGGGAAGTCGTCGTGCTAAGGCCCCATGGGACCAGCGCACCAGAACAGCAACCGC
CGCCGATGAAGAGAAGCATAGGCCGGAAGTATCCAACCTGCAGACACACAGACGTAGACGAGCGAAGACCGGATCCAGTC
GGATCCACCGAAGACAAACGCCGACCGGATCCCATGAGATCCGCCGGAGACAAACCTCCACACGCCTTCCGACGATGCTT
GAAACATCACCAGGACGGGGGCTAGGCGGGGAGGACCTTATTCCATCTTCAAGAAGCCGCCACCGCCTCATCTTCTTGAG
CATGGCACAAACCCTAACAAAACTCAGAAAAGCATCTAAAAACGGAGCCCTCCCGCCGGCAAGGGCCGGGATCCACCGTG
CCTCCATGATCCGAGGACCATAGAAGATAAGGCGGACCGGCGGCGCCGGCGAGAGGCAAGGAAACCCTAGATGGGAGTTG
GGCGTGGGCAGGAGGAGCGAAGGGTTCTTCCGGTCCGTGTTTCTGTTGTGTGTCTTGTTGGCCCTCATCTTACATAGAAA
TACTCGGCTTATATATAAACCGAGTGCTTTTTTT-TGGCTCTCGGTTTACCCTTGATAAGCCGGTCCCCAGTAAGCCGTG
TCTTGTAAGCCGGGGAAAACACACGGTTTATATATAAACCTAGTGCAAATCGGCATAAGCCGAGTGTTTTTGGTACATGG
CTTACAATTTTTTTCCTGTAGTG---------------------------------------------------------
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>chrUn_475
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----------------------------------------------------------------------ACACACACAC
CGCTATCTCTTTGTGGTTCTATACGCATGTGTGTAGGGTTTTTTTATTTTCTATTTTTGAGGAAAGGTTTACTAGAGTTA
TCAGAAGGAGATGGGCCACCAAACCATGACCCATCAATAGGTGACAGCAGCATGGAT----------GGTATCAATGTAT
CATACAGCTGTAGGGAAAGAAAGAAAACAACCAGATCTGCTATCGCCATGAATATCTCCATCAACTACTTTTGTCTACCT
TTGATTTGGTCTGGTTCTGGTGCCGTCCAAAAAAAATGCTGATCCTTATCAATTTATATA--------------------
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---------------------------------------------------------TATGTACTGTACCTTCACGATTG
GAGATCACTGACCGATCACATGTCCAAAGCCATTCTATTA----------------------------------------
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--------------------------------------TATATGATCGCTCCTACGTGCCCATTGCTTACACACTTGGAA
CCCCAGTAGCAAAAGAAGAAAGAAAGAGCACGGTATGGAAAGGAGAGCAAGAAGGAAAGCCAACAACGTTGCGGCTAAAA
TGGCT---------------------------------------------------------------------------
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------GGTGAGGAGGAGGTGTGGGTGGTAGAGTA-------GTGATGCCGGCCGGCGACACATCGAGGAAAGCGCTGCA
GCTCTCGCCACTCGACCTCATGCTAGCCAA--GAGGTCTCACTCCAGTCGTCCGCTTCTACCGGCGGTGT----------
--ACCATCGACGACGCCTTCTTTGATGTGA--------------------------------------------------
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>chr6B_530
TTTTT---------------------------------------------------------------------------
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------------------------------------------------------TTTTGAGGATAGGTTTACTAGAGTTA
TCAGATGGAGATGGGCCACCAAACCATGACCCATCAATAGAAGACAGCAGCATGGATGGTATCAAGAGGTATCAATGTAT
CATACAGCTGTAGGGAAAGAAAGAAAACAACCAGATCTGCTATCGCCATGAATATCTCCTTCAACTACTTTTGTCTACCT
TTGATTTTGTCTGGTGTGTCGTCC-----AAAAAAATGCTGATCCGTATCAATTTATATAATCCCTCCATTCCCTTATAC
AAGGCCACAAACTCATATTACACGTACCAAGATAAAATTTAATGACTTCTTTACAAGTCAACTTTTCTTTTCGTTAACCG
GGATCATTAATACACCACAAGCATGCAACGAATGAATGGGAAGGAAGTGGGGAATGTCATTATGACTACATGCATGTACG
TATTAAAAAGTTGCTAGTACGAGAAATCATCATTAATTTTTGCCTCGATTACTGTTGGTGGCCTTGTATTGATACAAAAT
GTATTTTTGATAGTGGCCTTGTATAAGGGAATGGAAGGAGATCACTATTCTAGTATATATGTACTGTAGCTTGAGGATTG
GAGATCACTGACCGATCGCATGTCCAAAGCCATTTTATTATACTCCCTCGGTCCCAAAATAAATGTCTTAACCTTAGTAT
AATTTTGCACTAAAATTAGTATAAAATTGAGACACTTATTTTAGGACGGAGAGAG-------------------------
--------------------------------------TATATGATTGCTGCCACATGCCCATTGCTTCCACACTAGAAA
CC----------------AAAGAAAGAGAACGGGAGGGAAAGGAGAGCAAGAAGGAAGGCGAACAGCGTTGCTGCTAAAA
TGGCT---------------------------------------------------------------------------
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------GGTGAGGAGGAGGTGCAGGTGGTAGAGTCCAG-TTTGTGATGCCGGCCAGCGACACACCGAGGAAAGCTCTGCG
GCTCTCGCCACTCGACCTCATGCTAGCCAACAGAGGCCTCACTCCAGTCGTCCGCTTCTACCGTCGGCGT----------
--ACCACCGACGACGCCTTCTTTGATGTGACCAGGTTGAAGACGGCGTTGGGCAAGGCCCTCGTTGTCTTCTACCCTATG
GCGGGCCGCCTCAGGGCTTACGCTGATGGCAGGCTAGAGATCAACTGCA---ACAAGGGTGTGCTC---TTCCTCGTCGC
GCACTCTCGTCTTACCATTGATGACTTCA---------------------------------------------------
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>chrUn_1039
CACCCAGGTCTGATTCTTTCTATATTACTACTTTCTAATCAAGTCAAGCATAATACAGTCATACACTATATTTCGTTTTT
GGTCAGTTTTCCTAGTTACTGGTTGCTCCAGGAAAAAATGAGTAGAAATAGAAACATATCATGCATCGATCGGTGCAGAG
GCCGGAGGTAATCCTCCTTTTCAAAAAAAATATCGTTCATAATTTTATATAGCATGTATCACAAATCCATCTATGTAGGT
GACATTCATGAAGTGTGGTGGAGTGGTCTTAGGGATGGTAACACACCATGGAGTTGTGGACGGCACTGCCGCATTACACT
TCTTGCATACATGGGCAGCATTCTCCAGAGAAGGCGACCGAGCTGTAGTGAGAATCCCCTACCTTGACCGCACCCTCCTG
TGTGCACGCAACCCACCTGTTGTTCGTCTGGACACCTTTACCATATTTTGCCCCAAGATAATCCTATCCCAGGCGCCAGG
TCCTGTCGTCGTCAATGAGGTTCTCATCCTCCGCAAGGACCAACTTTCCACCCTTAATCACATATGTGGTGGCAAAGGCG
TGAGCACCTTCAGCACCGTGAGCGCCCAGGTGTGGCAGTGCATGTCTCTAGCCCGACAGCTACCACCAGACTCCACAGTG
CGCCTTGCATTCATGGCGAATATCCGACGTAGAATGACGCCACCTCTCCCGGGCGGCTACTTTGGCAATGCAGTAATAAA
TCTAAGTGTCAGCGACGAAGCACGGACCATCTCCTCGGGCGACCTAGCATACATTGCGTGCCGAATCAGAGACACCCTAA
GCCGGGTGGACAATGAGGTAGTGCATTCGGCGGTCGACTATCTCGAGCTAGCATTGGCAGAGAGGGACAACCGCCCTGCT
TTTGGCTAGTCATAGAGGGAGTAACTTAGCAAGTAACATAGTGCACTCCGAGAATTTTTTGCTTATGTGGCATGTAGTTA
ATGAGAAGTGGTAACATAATATGTTACTATAACATAACGCTTTCCAAGACAAGATGAGTCTACAAGCTAATTAATGAAGT
CCTCTATGACACTACTAGTATGTTATTTTGCACTATAAATGTAGTAATTTAGACTAGTGTCATATGCATGACACTAGTAT
AAGTTACTCCCCACTATAACCAGCCTTAGGCGATCTGCCGGCGATGGACATGCGAATGGTTAGCTGGCTTGGTATGCCAT
TCTATGATCTGGATTTCAGTTGGGGTAAGCCAATGGCTATGTTGCATGCAGTATCAAACCGTGGAGGCTTCGTTCATCTG
ATGGAGAGCATGCAGGGGGATGGTAGTGTGCACCTGGTGATGTGTATAGAGGCAGCAATTCTTGGGGAGTTCAAGCGTTT
GTTGTATGTCAAGTTCGACAACATGGTGTATTCCAAATTCTAGCTCGCTGCCTCCATTTATTTCTTTTCTTTGAGCACCT
CCAATGTAACGAGTCATGGTTATTTGTATCCAAATGTTTCTGGATAATTAATTTTAGTTTCAGTTAATCCAGATCTAACG
GTGTGTATGGCTCGAAATGTATTGCAGAAATGGACAACTATGTAGTAAGGCAGATAACCTGTGGTGTAATACGTCTAGGA
GACTTGAAGTTTGCACGCTATTATCCTATAATAAATGGGAAATGATTAGAATCAGTCGACAGGTCACATGTAAAGTTTCG
CCGCCCACACAGCCGTTGGATCCGAGTTCGATCCGACCATTGGCCGCATGCCTTTACCACCTTGTAATTTTTCTGCAACA
TCGTCTATGTTGCAGAAGTCCTTCCGCAACATAGTTAAGATAGAAAAAATTATGCAAGAAATCTTCTGTTGCAGATATTT
CCGCAACATGAGGTATGCTGTAAAGGGTTATGCAACACTGCCTTTGTTGCAAATATGAGGAAAGGGTCGGACCATGAATG
CACATGATCAGACGGTACGGTTGTGGAGGTGGCAGATCTTTAAAAAAGATCCGCCGGCGACGCGTAGCATCGTCCATAAT
AAATACCGCCAGCGATTAGTCAAGACAGTGGTGTAACCTTGCAATGTGATTTTTTAGATACCCACCCTACAAAGTCATGT
CGACTGGTATCGAGCCATCAGTGCATCACTTATACCAAATTGTGAGATTTCTAAGCTAATGTATGAAGCTGATCTGTCAT
GACAACTTTCAGTGTACTTTACTCAATTATTTTGTCGACTGATTAGTTTCAGTAAATCAAGAACTAATAATTTTAGGTCT
TGGAGTGTATTCGAGATGGGCAAGTGTGTAAGTAAGGCAGGTTACCAAGGTTGTGATTGTAATGATATACTTGTAAAAAA
ACAAATGCATGTGTGAATAGTGTGGTTTTTGCTTTTGACTTTTTGACACTATCTTGCTGAATTAATGTTTTTTGTTTTTC
TCTGTATATATTCTGGATTTGGTTTGAAATTTTAGATGGTGTGCTCACATGTCTGGTGAACATTCAAAAAAGTTTAAGAA
TTTTTCGAAACATCTAAATTTGAATTCTTTTACACGTCTTGTTTACATACATAGCCCTTGAAGATGCCTTAGATCTACCA
TAGAATATATTGATGTTTAACTAACCGTCAGTATCTGCCGACATAGATGGCCCACCTTCTAGTGTTTGATTGCAATCAAT
AGGAGAAAGCAGCATAATAGTACCCGTATGTACTGGCGATAATGATATTGCCATCAATGTCTCCATCAACTTCTGGACGT
ACTAGAGACCACCGATCACATGCATGTTCCCAAATGGTACATGCCGGCCGCTGCCACGCCGGGAAGAGTCTTGCTTTGTA
ATGGCCGGTGAGGAGGAGGTGCAGGTGGTAGAGTCTTGCTTTGTAATGCCGGCCGCTGCCACGCCGGGAAGAGCGCTGCG
GCTGTCGCCGCTCGACCTCATGCTGGCCAACAAAGGCCACACCCCACTTGTTCATTTCTACCGTCGATGTGGTTCCGTCG
GAACCACCAAGGACGACTTCTTTGATGTGGCCAGGTTGAAGACGGCATTGGGCAAGGCTCTCGTGGCCTTCTACCCCCTA
GCCGGCCGTCTCAGGCCGGACGCCAAGGGCAAATTGGAGATCGACTGCA---ACGGCGAGGGTTTACCTTTCCTTGTGGC
TCGCTCTCGTCTAACTGCTGATGACTTTAGAGACTTCAAGCCATCACCAAGGCTAAGGAGGTTGTTTGTTCCCCTCGTCG
ACGACTCAGCAGGCATCTTGTGCGCCATTCAGGTCTGTGTGTTTCT----------------------------------
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>SNPs
----------------------------------------SS---S----------------------------------
--------------------------------------S-----------------------------------------
-------------S--------------------------------S-----------S---------------------
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--------------------------S--S-S--S---------------------------------------------
--------------S-----------S-------------S------------------------------------S--
---------------SSS-SSSSSSSSSSSSS-SSSS--S-SSS-SS-SS-S-SSSSS-SSSSSSS-SS-----------
S-------------------------------------------------S---------S-------------------
------------------------------------------------------S-------------------------
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------------------------------------------SS------S-SS--S-S--SS-S-S-----S--SSS--
S--SSS-S--SSS-SS-SS-SSSSS---S-S-SSS-S-SSSSSS-SSS---S--S--SSSSS-SSSSSSSSSS-SS-SS-
SS-SS-SSSSS-SSS-SSSSSS--SSSS-SSSS-SSSS--------------------------S--S------------
S----------------------------------------S------------------S------S------------
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---------------------------S----------------------------------------------------
---------------S-----------------------------S-------------------S--------------
------------------------------S-------------------------------------------------
----S--------------------------------------------SSS--------------------S-------
S--------------S-S-S----------S----SSS------------------------------------S-----
-S---S-S--SSS----S---------SS--------SS-S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS
>forward_2030
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----------TGTCGTCCACACAGCAGTTT--------------------------------------------------
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>reverse_3849
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--------AGTCTGGGCTAGTAGGGTGG----------------------------------------------------
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