>input_sequence_81533
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-------------------------------------------------------------------ATGCTTCGATTGG
CGGGCGTTGCCGAGGACTTGGGCGCCGTCGTCAACAACAAGGACTCCATCCGACTCCTGGATCGCGCGCGCACACTAGTT
GCTGACACGAGGCAGCACCTCGTGCCAGCAGTTGGTGTGGATCTCTTCGACCACGACCGCCAAGGCCGCCTCCTCGCGTA
CGCCTACGCCCTCACCCACCTCGGCAACGGTGTTGGGAGCGGCATCGGCCAGCCCGTGGAGGCGGGCGCCGTGGTGAACT
TCATGAACATCTTCATCGGGCGCGTCAACCAGGCCATCGAGCTTTTCTGGAACGAAAAACTCACTGGCCCTCAATTCTTC
GATGCGGTGCTGGATGCCAGCGCAATTGTCGGCATCAGGGCCGGCGTGGACTACATTCGTCTCTGA--------------
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>chr5A_1_TraesCS5A01G275700
ACATACGATGAGCATTTGAGGAGTCCGGTTGTAATACTTTCATGATAGAGACAAATTTCAAATGAAAATTTTCGATTCAA
ATATATTTCAATCGTCATCTAGCATGGAGAGCAAATGGAGGCGGCTATTATGATTGGAGA-GATATTTTGTCACAGATCA
TCCATGGTCTTTCCTGTGATCAAACGGTCCAGTTTGATGCATCTAAACGCG-----------GAATAACCTCCGTGCCTA
CTCGTTCAACGGAGGACTACTAAAGCTTGGCAAGCTCTCTGATTGGACGACAGCATACTGCCACAGACCGCGGTCCTAGT
CTTTCAATCGTACGGTCATTTTCGGTCGTATCGAACGGCCGCTGTGCAATATTGCGTCGTCCCGCGGATCGCCCCGCCCA
TCTCTTTTGGTCATGGTCTG-ACGTATAAAACCGGCGCCAACCGAGCTCCCCCGTCCCGCCCGCCCCTCCACCCCA----
--------CCCCCAATTCGCCCAGCTCCACCGTCCCGCCCCTCCACCCCCA--AATTCGCCCAGCTCCACCGCGCCTCCA
CCCCATCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTCAAGCAATGATACACCTCGTCGACAACCTCGCCGAGATGGAGGCCGTCGTCGACTAGCTCACCGCGCTCGACGA
GCTACCTGCCCCGGGCGAGGTCTCCATCACCGTCCGGGGCATCGACTGCCTCGACTTCGCGCCCCAGATGCTTCGATTGG
CGGGCGTTGCCGAGGACTTGGGCGCCGTCGTCAACAACAAGGACTCCATCCGACTCCTGGATCGCGCGCGCACACTAGTT
GCTGACACGAGGCAGCACCTCGTGCCAGCAGTTGGTGTGGATCTCTTCGACCACGACCGCCAAGGCCGCCTCCTCGCGTA
CGCCTACGCCCTCACCCACCTCGGCAACGGTGTTGGGAGCGGCATCGGCCAGCCCGTGGAGGCGGGCGCCGTGGTGAACT
TCATGAACATCTTCATCGGGCGCGTCAACCAGGCCATCGAGCTTTTCTGGAACGAAAAACTCACTGGCCCTCAATTCTTC
GATGCGGTGCTGGATGCCAGCGCAATTGTCGGCATCAGGGCCGGCGTGGACTACATTCGTCTCTGAAGTGTGGAAGTACT
GCTAGCATTAGAGATATCTGAAAAATATTAATGTATGTCGTTGAACTGCTGATAGTTATCATAGATATCATAGAGGTTGT
AAATTATGGTGTTGAGTTATGTAATGGGGAATGAGATATCATAGACACAATAGTAATATAAATATCATGCATGTTGAGTT
ATCTGTTGGAACGAAATCAAGTGCTGAATTTAGTCTGCCATTTCGTTTATTAATTATGAGAGCAAGTTTGTTCCAGTGGG
GCTTCCTTATGTTATATCCGACGGCTGCGCAGTTTATCTCCCTCACGTCCCTTTTCCAGCGAAAGATTTTTTTTTTACAA
ACAGCTCGTATTCTCAGAAATAACAACAACAACACG--------------AACTTGACTTGAAGGCAACGAGGCATTTAT
ATTTCAGCAATATCTCTGGATTAGACTGCAGCTTCTACAGATCTTCAGG-------------------------------
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--------------------------------------------------------------------CATTGGGAGATC
AGGAGTCAACTTGACTTTCAACATTCTAGTGCGCAGAGTATACCTGCATGTGCAACTTCTGCTGACTTTCAACATTCTAG
TGCGCAGATTTATGTTCGACTATCATCCATGATGTAGGCGTCAACACTGTTTAC-GTGACCTGGCAGTGATTAATT----
------------------TGTTTTGTCCTCACATAACTGAAAGTTATTTCAGATCATTAAGAACCAAGTCGCGGATCCTT
AGCAGCTCGCCAAAAA---AAAAGAATAGAGGAATACCGAGAAGGCCAAAAGAAACCAAAACAAGCAAAAGAGACCATTA
ACTGAAAGATAATAGTTCCTCTGTTTTTATTTACTCTGCATATTATCTGAAGCCAAACTTGATAAAGTTTGACCAAGTTT
ATAAAAAATATATGAACATTTACAATAACAAATCCGTATGATGTTATAGTATATTCAATAATGAGTCTAATACTATTGAT
TTGTTATTGTATATGTTATTAATATTTTTGTCTATAAACTTTGTCAAAGTTTACAAAGTTTGATTTGACCAAAACTAATA
TACAG
>chr5B_1
ACATAGAGTGGGCATTTGAGGAGTCCGGTTGTAATACTTTCACGATAGAAACAAATTTCAGATGAATTTTTTTTCTATCC
CA--ATGTCAATCGTCACGTAGCATGTAGAGCAACAGGAAGCGGCTATTCTGATTGGACGGGATATTTTTCCACGGATCA
T----GGTGTTCCCTATGATCAAACGGTCCATTTTGATCCATCTAACGGCTACTGTGGACGCGAATAAACTCCGTGCCTA
CTCGTTCAACGGAGGACTACTGAAGCTTGGCAAGCTCTCTGATTGGACGACAGCACACTGCCACGGATCGCGATCCTAGT
TTTTTAATCATACGGTCATTTTCTGTCGCATCCAACGGTCGCTGTGCAATCTGGCGTCGTCCCGCGGATC-CCCCGCCCG
TCTCTTTTGGTCATGGTCTTCACATATAAAAGCGGTACCGACC-AGCTCCCCCGTCCCGCCC----CTCCACCCCAGCCC
CCATCCCACCCCCAATTCGCCCAGATCCGCCGCCCCGCCCCCCCACCCCACTCAATTCGCCCAGCTCCACCGCCCCGCGC
CCCCCNNNNNNNNNNCGCGCCCCCCGCCGGACCCCCAACC----------------------------------------
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-----TCAAGCAATGATACACCTCGTCGACAACCTCGCCGAGATGGAGGCCGTCGTCGACCAGCTCACCGCGCTCGACGA
GCTACCTGCCCCGGGCGAGGTCTCCATCACCGTCCGGGGCATTGACTGCCTCGACGTCGCGCCCCAGATGCTTCGACTGG
CGGGCGTTGCCGAGGACTTGGGCGTCGTCGTCAACAACAAGGACTCCATCCGACTCCTGGATCGCGCGCACACACTGGTT
GCTGACACGAGGCAGCACCTCGTGCCAGCAGTTGGTGTGGATCTCTTCGACCACGACCGCCAGGCCCGCCTCCTCGCGTA
CGCCTACGCCCTCACCCATCTCGGCAACGGTGTCGGGAACGGCATCGGCCAGCTCCTGGAGATGGGCGCCGTGGCGAGCT
TCATGAACACCTTCATCGAGCGCGTCAACCAGGCCATCGAGCTTTTCTGGGACGGAACGCTCGCTGGCCCTGAATTCTTC
GATGCGGTGCTGGAGGCCAGCGCGATTGTCGGCATCAGGGCCGGCGTGGACTACATTCGTCTCTAAAGCGTGGAAGTACT
GCTAGCATTAGAGATATCTGAAAAATATTAATGTATGTCGTTGAACTGCTGATAGTTATCATAGATATCATAGAGGTAGT
AATTTATGGTGTTGAGTTATGTAATGGGGAATGAGATATCATAGACACAATAGTAATATAAATATGG----TGTTGAGTT
ATCTATTGGAACGAAATCAAGTGCTCAATTTAGTGTGCCA-----TTTATTAATTATGAGAGCAAGTTTGTTCTAGTGGG
GCTTCCTTATGTTA-----------------------CTCCCTCACGTTCCTTTTCCAGCGAAAGAAAGAAAATACAAAA
ACTCGCATTC-TCTCGGAAACAACAACAACAGGAATTGGCGTATCCATTCAACTTGACTTGGAGGCAACGAGGCATTTAT
ATTTCAGCAATATCTCTGGGTTAGACTGCAGCTTCTAAAGATCTTCAGGCATTGGAGAGTGAATTGCAAAAAACCACCAC
ATTTGGGGCTTCATCTGCGAAAAACCACCAGGTCGCTAATTATTTACAAAAAACACCGCGCATTCAGTAAACTTTTTGCA
AAAAGCACTGATTAGGTGCTTTAGCCCATTTAACCACTTTCTGACAAGTGGGGCCGCAATGTAAGTAGCTGATTTGGTAA
CAAATTGACATATACCTCCCTGGATCTTAAAAAAAAAGCAATCCTCCCCCTCCCCCACGAAGGGCATCTCCTTNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGTCGCGGTGGCCGACCTGCCCAGCATGGTGCGCCCGGGTGA
TGCTTCTGCCGTCGGGCAGAGGGCAGGCGAACGAGGTCAACGCGTCCCCTCCCCCACGAAGTATACGGCCGCGGACGCGC
TGGCGTTCGTGGCGGCGAGCCTCGGGAAGGGCGGGTGGGGCAGAGGTGGAGGTGGATGGCGCGGGAGGTGGGCCGCGCTG
TTCCGGCGCGGGGAGAGGTCATCGGACAAGTCGTCGTTGTCGGCGTCCTCGTCCTCGTCGTTGCTCCGCCGGGTGCTCGG
CGACGCGACGCTGAGGGACACGGTGGCGCCGCTGCTGGTGCCGTGCTACGACCCTGGCCACGGGCGCGCCGTTCCTCTTC
TCTCGCGTCGACACCGTCGAGAGCGACATCTTCGACTTCCGCCTCCGAGACGTCTGCGCGGCCACCTGCGCTGGTGGCTC
CGCCGCGGCCGCGGTCCGCTCCGTGAACGGCCTTACGGCCATCGCCGCTGCGTCCGGTGGCGTGGCAGCCATGGGCAACC
CCGCCGCGGCGGCCATCACACACGTGCTGCACAACAAGCAGGAGTTCCCCCTCGCCACCGGCGTCGACGACCTGCTCGTC
GTCTCCATCGGCTCCGGGTCCTCCTCCGGCGGCACGGCCTCCGGCTCCACCACCCCGTCTGCCGGCTAGCGCACACCGAT
CCCCCCGCGCTCGCCGTCCCCCGCCGAAATGGTCCGCCTCACCGCCGAGGGCATCGCCGACATGGTCGACCAGGCCGTCG
CCATGGCGTTTGGCCACACCTGCGGCCGCAACTACATGCGCATCCAGGTCAGCCAAGCCACAGAGCTTCACCTCGCGCGT
CCCCTCCATTCTTGTCGTCGTTGTTTCAATCAAACGCTAACAACGACGAGTTACTGGTTCCAGGCAGCGGCGTCGGCGCA
CTCGATCAAGGCGCTCCGGTCGCTGGAGGCTCGGAAGGTGGTGGCGATCGCGGACGGGATGCTGACGACAAGAATGGGGT
CGGGGTCACTCCACCTCCTCCTCGTCTCCACGACCGCCCGGTCGGCGGCGACGGGAGCCGGACATGGTCCAGGGGGCTGA
TTGCTTTTTTAAAAATCTATTAGGGGTCTGTGTGTGATTATTTTGCCAAGTCAGCTCCTTACAGTCCGACCCCATATGTC
AGAAAGTGATTAAATGGGCTAAATCACCTGTTCAGTGCAAACTACAAAATGTTTACTGAATGTGCGGTGTTTTTTGCAAA
TGATTAGCGACCCGGTGATTTTCCGCAGATGAAGCCCTAAATGTGATGGTTTTTTGCAATTCACTCGGCATTGGGAGATC
AGGAGTCAACTTGACTTTCAACATTCTACTGCGCAGAGTATACCTGCATGTGCAACTTCTGCTGACTTTCAACATTCTAG
TGCGCAGATTTATGTTCGACTATCATCCATGATGTAGGCGTCAACACTGTTCATGGTGACCTGGCAGTGATTAATTCAAA
GCTTTTTTTCTCTAAATTTGTTTTGTCCTCACGTAACTGAAGGTTATTTCAGATCATTAAGAACCAAGTCGCAGATCCTT
AGCAGCTCGCCAAAAAAAGAAAAGAATAAAGGAATACCGAGAAGGCCAACAGAAACCAAAACGAGCAAAAGAGACCATTA
ACTG----------------------------------------------------------------------------
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>SNPs
-----SSS--S-------------------------------S------S----------S-----SS----SSS-SSSS
SSSS--S----------SS-------S-------SS---S---------S--------SS---------SS---S-----
-SSSS---S--S---S---------------S------S-------SS--S-----------------S-----------
---------------------S---------------------------------S--------S--S----S-------
S---S----S-------------S----S---S-----S-----------S-S-----------------S--------S
-------------------S---S-------S---SS--S---S------------------SSSS--------------
------------------------S---S---S--------S-------SS----------------------S--S-SS
----SSSSS------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS-------------------------------------------------------S-------------------
------------------------------------------S------------S--------------------S---
------------------------S--------------------------------------------S------S---
--------------------------------------------------------------S-S---------------
------------------S--------------S----S--------------S-S-----SS-----------S--S--
---------S--------S-------------------------------S---S--SS---S--------S--------
--------------S--------S----------------------------------------S---S-----------
-----------------------------------------------------------------------------S--
--S--------------------------------------------------------------SSSSSS---------
----S--------------------S--------S-----SSSSS----------------------------S------
--------------SSSSSSSSSSSSSSSSSSSSSSS-----------S-----------------SSSSSSS-SS-S--
--SSSSSS-SS----S----S----------SS-SS-------------------------S------------------
-------------------S-----------------S------------------------------------------
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----------------------------S---------------------------------------------------
---------------------------------------------------S-S--------------------------
--------------------------------S--------S------------------------------S-------
----------------------------S--------------------S------------S-----------------
----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS
>forward_325
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-----------------------------------------------------------------GACCGCGGTCCTAGT
CTTTC---------------------------------------------------------------------------
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>reverse_1352
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-----------------------------------------------------------------------CAATTCTTC
GATGCGGTGCT---------------------------------------------------------------------
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>forward_1331
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-------------------------------GGCCATCGAGCTTTTCTGGA-----------------------------
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>reverse_4113
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--------------------------------ACTCTGCATATTATCTGAAGCCA-------------------------
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