>input_sequence_81512
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--------------------------------------------------------ATGGCCTCCTCCGCTGCCGGCGCC
GGCAAGTCACTGATCCAGACATTCCGCAAGTTCTTCAAGAAGCCGTGGGAGATCACCGGCCCGTGCTCCTCGCCCGAGTA
CCGCAGCGCGGTCCCGGGTGCGCTCGAGTACCGTCAAACCTGCCCGGCCACCCTTCGCGAGGACTCCCTCAGGGCCGTCA
TCCCCACCTCCGACCCGGAGACCGTGTTCGACATCAAGTACTACCCGCGCGACTGCCGCCGCAACCGCCCGCCCGTCCGC
CGCACCCTCCTCCGCAAGCCCGATCTCGAGCGCTACATGGCCGCCAAGCAGTTCGACCCCGCCAAGGACTTCCCCGTCCC
CTACGTCAATTCTGCTGTCGAG------TACAGCGAAGTCGGCGGCGGCTACACCAAGTGA-------------------
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>chr3B_1_TraesCS3B01G333500
AGCCATCTCCAACCCTCTTCACCAATCCCAGTTTTAGTGCCTCTCTACCATGGAGAATTGCCCTCCAAATATGTGATGAC
CCTCTCTTGTTCTTGGCTAACATAAAGTCATGATCATGAA--TACTTGCCCTTAGGAATTCTAGCACACAACGATTCCGG
TGTGGTAATCAACCTCCAGCCCCGTTTTGCAAGCATAGCCTGATTGAACATTTCAAAATCCCTAAAAGCCCATGCCTCCA
TCTCCTTTTGGTATAGCTATATCTCTCCATTTT-TT---CTAATGTAGCTTCCTTCGGTTTTCATCTCTACCCCAGAAGA
ATCGAGCCACTATATCAGTCAACTTCTTACATAGTTTTTTGAACAACCTGAAACAACTCATGGAATCTGTGGGAATTGCC
TGACAAACCGCTTTGATCAGAACTTCCCTTGTTGCGGTGCTCAGAAGTTTGGGAACGTACCCATTTACTAGTTTACGGAT
ACTAGTGGCAATGTGTTCAAATTAAATATCGGACGAGCAACCAATGGCCATTGGCAGCCCCAAA-TACTTATCAACTAGA
GCTTGAACTTATGTTTGAACTTGAAATTTTACACGTCTTCCTGCAAAAAGAAAA--AAGAAAATTTACATGTCAATAAAA
AACCATTTCTTCAACATACTGAATTTTTTGAGTTTTTTTTTTC---AAAACTAAATTTGGTTCCCCGCAAAAAAC---AA
CAAGTAAACATAGTTCTATTGATCCATTCACCATAACTTTGGTTTGCATTATTCTAAAAAAAAACTTTGGTTTGCATCGA
TAATTTCTCCTTCCTTTCCACCACTGTGCTCTTTTCTTCGGCCTTCTTCCCGGTCAGACGGTCCAGATCAGGCCACGTTG
TGCAGTGCAGCCATAGCTAAATCCAGGTTTCTTCGGTCTTCACCGTCGCTGAAC-AGCCCGTTTCCCGCATCTGCCGATC
TCCCCCGTTCCCCACCTCCCCCTTCCCGTCGGGCCGTAGCCACCGCACCGCCCCCGATGGCCTCCTCCGCTGCCGGCGCC
GGCAAGTCACTGATCCAGACATTCCGCAAGTTCTTCAAGAAGCCGTGGGAGATCACCGGCCCGTGCTCCTCGCCCGAGTA
CCGCAGCGCGGTCCCGGGTGCGCTCGAGTACCGTCAAACCTGCCCGGCCACCCTTCGCGAGGACTCCCTCAGGGCCGTCA
TCCCCACCTCCGACCCGGAGACCGTGTTCGACATCAAGTACTACCCGCGCGACTGCCGCCGCAACCGCCCGCCCGTCCGC
CGCACCCTCCTCCGCAAGCCCGATCTCGAGCGCTACATGGCCGCCAAGCAGTTCGACCCCGCCAAGGACTTCCCCGTCCC
CTACGTCAATTCTGCTGTCGAG------TACAGCGAAGTCGGCGGCGGCTACACCAAGTGATCCAGGTGAGGGCTGCTAC
CTTTAGATCTGGGGTTAGAGCTAGGGTTCCGTGTCATGCATGCCTAATTGCAATCTTTATCTTAATCAGTGTGTGTCTGT
TG--TTTTAGAATCAAATGTAGATTCGGGGCGTCAGTACGTGTGAATATAGTTGATAACCCAACCTTGCTTTGTGAAATT
AGATTTCCTGTCTTGTTGCAATTCATGAAATAGTTAACTA--TATGATGATTGGTTCAACTGTAACCCAACTTCATCACC
ATCTTTTTAGAGGGAAATGCATCATGCCGCATAAGT--------------------CAAGGTTAAGTATATCATTGTGAA
TTGCTAAGTCTCTGGT----------------------------------------------------------------
------------------------------------------------------------------TTTTCAAGTGTATA
TCAAAGATATATTGGTTGGCTTGAACATCATAATGTAAAATGAGGATGTCATTTAAACGAGCTACGAGAATCACAAATCC
TGTTTTCCATTCCCTCTGAGCCTACTGACGCCACAAGAATCGGTTTCCAGCACCATCCTACCCTATCCTTTCAAAACAGC
TGGCTTGCGCCTGAGGGTTCATGTCGGTAACCATTCGAACCACTCACAACTTCTTCCATGACAACATCTAATCAAAGCAA
AAGAAAGGATGGCAGAAAGTTAGGAATAATCCAAACTACAAAGTTCATTTTTTATACTGCAGGTGGTTCCATTTCTTTCC
TGATTGGAGTTCTGGGTATGGGCTTATATGGTTCCAGTGAACCAGGATTAGATTTGGAATGATAAATTAATCAATCATAA
CCTGGGCTTCCCACAAGGTGACACCGACGGTTACCTCCTTTTGTGCGCCCATCACCTCCTC---CATGAGGATGATCCAC
TGGATTCATTGCAAATATGGACGGGGAGCGGTCTCAAGTTTTTT--GAGGTCCTCGAGATCACATTTTAGGCCGAGTAGA
GACGCTAGGGAGTCTCAAACAAATACGATGA------------ACATGGCCAAGGCTCTAGGATTTTTATATTTTGTTTA
TTGCATGCATTTCTTCCATGGTCCGTTGCTAT
>chr3A_1
AGCCATCTCCAACCCTCTTCACTAACCCTAGTTTTAGTACCTCTCTGCCATGGAGTATTGCCCTCCAAATGTGTGATGAC
CCTCTCTTGTTCTTGGCTAACATAAAGTCATGATCATGAAAATACTTGCCTTTAAGAACTCTAGCACACAATGATTTTGG
TGTGGTAATCAACCTCCAGCCCTGTTTTGCAAGCATAGCTTGATTAAACATTTCAAAATCCCT-AAAGCCCATGCCTCCA
TCTCCTTTTGGTATAGCTATATCTCTCCATTTT-TT---CCAATGAAGCTTCCTTCGGCTTTCATCTCCACCCCAGAAGA
ATCGAGCCACTATAACAGTCAACTTTTTACATAGTTTTTTGGACAACCTGAAACAACTCATGGAATATGTGGGAATTGCC
TGACAAACCGCTTTGATCAAAACTTCCCTTGCTGCGGTGCTCAGAAGTTTGGGAACATACCCATTTACTAGTTTACGGAT
ACTGGTGGCAATGTGTTCGAATTGAACATCGGAAGAGCGACCAATGGCCGTTGGCAGCCCCAAA-TACTTCTCAACAAGA
GCTT----------------------------------------------------------------------------
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>chr5B_1
AGCCATCTCCAACCCTCTTCACCAATCCTAGTTTTAGTGCCTCTCTACCATGGAGTATTGCCCCCCAAATATGTGATGAT
CCTCTCTTGTTCTTGGCTGACATAAAGTCATGATCATGAAAATACTTACCTTTAAGAACTCTAGCACACAACGATTCCAG
TGTGGTAATCAACCTCCAGCCCTGTTTTGCAAGCATAGCCTGATTGAACATTTCAAAATCCCT-AAAGCCCATGCCTCCA
TCTCCTTTTGGCATAGCTACATCTCTCCATTTT-TT---CCAATGTAGCTTCCTTCGGCTTTCATTTCCACCACAGAAGA
ATCAAGCAACTATATCAGTCAACTTCTTACATAGTTTTTTGGACAACCTGAAACAACTCACGGAATATGTGGGAATTGCC
TGACAAACCGCTTTGATCAAAACTTCCCTTGCTGCGGTGCTCAGAAGTTTGGGAACGTACCCATTTACTAGTTTACAGAT
ACTAGTGGCAATGTGTTCAAATTGAACATCGGATGAGCGACCAATGGCCGTTGGCAGCCCCAAA-TACTTCTCAACTAGA
GCTT----------------------------------------------------------------------------
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>chr5B_1
AGCCATCTCCAACCCTCTTCACTAACCCCAGTTTTAGTACCTCTCTGCCATGGAGTATTGCCCTCCAAATGTGTGATGAC
CCTCTCTTGTTCTTGGCTAACATAAAGTCATGATCATGAAAATACTTGCCTTTAAGAACTCTAGCACACAATGATTTTGG
TGTGGTAATCAACCTCCAGCCCTGTTTTGCAAGCATAGCTTGATTAAACATTTCAAAATCCCT-AAAGCCCATGCCTCCA
TCTCCTTTTGGTATAGCTATATCTCTCCATTTT-TT---CCAATGAAGCTTCCTACGGCTTTCATCTCCACCCCAGAAGA
ATCGAGCCACTATAACAGTCAACTTTTTACATAGTTTTTTGGACAACCTGAAACAACTCATGGAATATGTGGGAATTGCC
TGACAAACCGCTTTGATCAAAACTTCCCTTGCTGCGGTGCTCAGAAGTTTGGGAACATACCCATTTACTAGTTTACGGAT
GCTGGTGGCAATGTGTTCGAATTGAACATCGGAAGAGCGACCAATGGTTGTTGGCAGCCCCAAA-TACTTCTCAAC----
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>chr4A_1
AGCCATCTCCAACCCTCTTCACTAACCCCAGTTTTAGTACCTCTCTGCCATGGAGTATTGCCCTCCAAATATGTGATGAC
CCTCTCTTGTTCTTGGCTAACATAAAGTCATGATCATGAAAATACTTGCCTTTAAGAACTCTAGCACACAACGATTTTGG
TGTGGTAATCAACCTCCAGCCCTGTTTTGCAAGCATAGCTTGATTAAACATTTCAAAATCCCT-AAAGCCCATGCCTCCA
TCTCCTTTTGGTATAGCTATATCTCTCCATTTTTTT---CCAATGAAGCTTCCTTCGGCTTTCATCTCCACCCCAGAAGA
ATCGAGCCACTATAACAGTCAACTTTTTACATAGTTTTTTGGACAACCTGAAACAACTCATGGAATATGTGGGAATTGCC
TGACAAACCGCTTTGATCAAAACTTCCCTTGCTGCGATGCTCAGAAGTTTGGGAACATACCCATTTACTAGTTTACGGAT
ACTGGTGGCAATGTGTTCAAATTGAACATCGGAAGAGCGACCAATGGCCGTTGGCAGCCCCAAA-TACTTCTCAACAAGA
GCTT----------------------------------------------------------------------------
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>chr2A_1
AGCCATCTCCAACCCTCTTCACCAATCTTAGTTTTAGTGCCTCTCTACCATGGAGTATTTCCCTCCAAATATGTGATGAC
CCTCTCTTGTTCTTGGCTAACATAAAGTCATGATCATGAAAATACTTACCCTTAAGAACTCTAGCACACAACGATTCCGG
TATGGTAATCAACCTCCAGCCCTGTTTTGCAAGCATAACCTGATTGAACATTTCAAAATCCCT-AAAGCCCATGCCTCCA
TCTCCTTTTGGTATAGCTACATCTCTCCATTT-TTTTTTCCAATGTAGCTTCCTTCGGTTTTCATTTCCACCCCAGAAGA
ATCGAACAACTATATCAATCAACTTCTTACATAGTTTTTTGGACAACCTGAAACAACTCATGGAATATGTGGGAATTGCC
TGACAAGCCGCTTTGATCAAAATTTCCCTTGTCGCGGTGCTTGAAAGTTTGGGAACGTACCCATTTACTAGTTTGCGGAT
ACTAGTGGCAATGTGTTCAAATTGAACATCGGATGAGC-----ATGGCCGTTGGCAGCCCCAAA-TACTTCTCAACTAGA
GCTT----------------------------------------------------------------------------
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>chr2A_54
-----------------------------------------------------AGTATTGCCCTCCAAATGTGTGATGAC
CCTCTCTTGTTCTTGGCTAACATAAAGTCATGATCATGAAAATACTTGCCCTTAAGAACTCTAGCACACAACGATTTTGG
TGTGGTAATTAACCTCCAGCCCTGCTTTGCAAGCATAGCTTGATTAAACATTTCAAAATCCCT-AAAGCCCATGCCTCCA
TCTCCTTTTGGTATAGCTATATCTCTCCATTT-TTT---CCAATGAAGCTTCCTTCGGCTTTCATCTCCACCCCAGAAGA
ATCGAGCCACTATAACAGTCAACTTTTTACATAGTTTTTTGGACAACCTGAAACAACTCATGGAATATGTGGGAATTGCC
TGACAAACCGCTTTGATCAAAACTTCCCTTGCTGCGGTGCTCAGAAGTTTGGGAACATACCCATTTACTAATTTACGGAT
ACTGGTGGCAATGTGTTCGAATTGAACATCGGATGAGCGACCAATGGCCGTTGGCAGCCCCAAAATACTTCTCAACAAGA
GCTT----------------------------------------------------------------------------
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>chr3D_562
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--------TTATGCTTGTACTTGAAATTTTACATGTCTTCCCGCAAAATAAAAGAGAAGAAATTTTACATGTCTATAAAA
AGCCATCTCTTCAACATACTGTATTTTTTGAGATTTTTTTCAAAAAAAAACTAAATATGGTTTCCCGGAAAAAACAAGAA
CAACTAAAAATAGTTCCATTGATCCATTCACCAT----------------------------AACTTTGGTTTGCATCGA
CAATTTCTC----C-TTCCACCACTGTGCTCTTTTCTTCGGCCTTCTTCCCGGCCAGATGGTCCAGATCAGGCCACGTTG
TGCAGTGCACCCATAGCTAAATCCAGGTTTCTTCGGCCTTCACCGTCGCTGAATCAGCCCGCTTCCCGCATCTGCCGATC
TCCCCCGCTCCCCACCTCCCCTTTCCA-TCGGGCCGTAGCCACCGCACCGCCCCCGATGGCCTCCTCCGCCGCCGGCGCC
GGCAAGTCACTGATCCAGACATTCCGCAAATTCTTCAAGAAGCCGTGGGAGATCACCGGCCCGTGCTCCTCGCCCGAGTA
CCGCAGCGCGGTCCCGGGCGCGCTCGAGTACCGTCAAACCTGCCCGGCCACCCTTCGCGAGGACTCCCCCAGGGCCATCA
TCCCCACCTCCGACCCGGAGACCGTGTTCGACATCAAGTACTACCCGCGCGACTGCCGCCGCAACCGCCCGCCCGTCCGC
CGCACTCTCCTCCGCAAGCCCGACCTCGAGCGCTACATGGCCGCCAAGCAGTTCGACCCCGCCAAGGACTTCCCTGTCCC
CTACGTCAATTCTGCCGTCGAGGAGGACTACAGCGCCGTCGGCGGCGGCTACACCCAGTGATCCAGGTGAGGGCTGCTAC
CTTTAGATCTGGGGTTAGAGCTAGGGTTCCGTGTCATGCAGGCCTAATTGCAATCTTAATCTGAATCAGTGTGTGTCTGT
TCTTTTATAGAATCAAATGTAGGCTCGGGGCGTCAGTACGTGTGCA-ATAGTTGATAACCCAACCTTGCTTTGTGAAATG
AGATATTCTTTCTTGTTGCAACTCGTGAAATAGTTAGCTAATTATGATGGTTTGTTCAACAGTAATCCAACTTCATCACC
ATCCTTTTAGAGGGAAATGCATCATGCGGCATAAGT-------------------------------ATATCATTGTGAG
TTGCTAAGGCCGCGTTCGGCAGTCCACGCTCCTTCAAATCCTAGAATCTACGGAGCAGCTGTTAGCTCGCTCCAGGGATT
ATAACCCCAGCTCCGTCCGCTCTGGGAGCGGAGCGGAGGGACACCGAACGCGCCCTAAGTCTCTGGTTTTCAAGTGTATA
TCAAAGATATATTGGTTGCCTTGAACATTGTGATGTAAAATGAGGATGACATTTAAACGAGCTATGAGAACAACAAGTCC
TGTCTTCCATT-CCTTTGAGCCTACGGACGCTGCAAGAATCCAGTTCCAGCACCATCCTACCCTATTGTTTCAAAACAGC
AGGCTTACGCTTTAAGGTTCATGTCGGGAACCGTTTGAACCACTCACAACTTCTTTCATGACAACATCTAATCAAAGCAA
AAGAAAGGATGGCAGAAAGTTAGGAATAATCCAAACTACAAAGTTCATTTTG--TACTGCAGGCGGTTCCATTTCTTTCT
TGATCGGAGTTCTGGGTATGGGCTTATATGGTTCCAGTGAACCAGGATTAGATTTGGAATGATAAATTAATCAATCATAC
CCTGGGCTTCCCCCAAGGTGACACTGAAGGTTACCTCCTTTTGTGCGTCCCTCA---CCTC---CATGAGGATGATCCAC
TGGATTCATTGCAAATATGGACGGGGAGCGGTCTCAAGTTTTTT--GGGGTCCTCGAGATCGCATTTTAGGCCGAGTAGA
GACGCTAGGGAGTCTCAAACAAATATGATGAACATT------GACATGGCCAAGGCTCTAGGTTTTTTATATTTTGTTTA
TTGCATGCATTTCTTCCATGGTCCGTTGCTAT
>chr3A_768
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--------------------------------------------------------------AACTTTGGTTTGCATCGA
CAATTTCTC----CTTTCCACCACTGTGCTCTTTTCTTCGGCCTTCTTCCCGGCTAGACGGTCCAGATCAGGCCACGTTG
TGCAGTGCACCCATAGCTAAATCCAGGTTTCTTCGGCCTTCACCGTCGCTGAACCAGCCCGTTTCCCGCATCTGCCGATC
TCCCCCGTTCCCCACCTCCCCCTTCCCGTCGGGCCGTAGCCACCGCACCGCCCCCGATGGCCGCCTCCGCCGCCGGCGCC
GGCAAGTCACTGATCCAGACATTCCGCAAATTCTTCAAGAAGCCGTGGGAGATCACCGGCCCGTGCTCCTCGCCCGAGTA
CCGCAGCGCGGTCCCGGGCGCGCTCGAATACCGTCAAACCTGCCCGGCCACCCTTCGCGAGGACTCCCCCAGGGCCATCA
TCCCCACCTCCGACCCGGAGACCGTGTTCGACATCAAGTACTACCCGCGCGACGGCCGCCGCAACCGCCCGCCCGTCCGC
CGCACCCTCCTCCGCAAGCCCGACCTCGAGCGCTACATGGCCGCCAAGCAGTTCGACCCCGCCAAGGACTTCCCTGTCCC
CTACGTCAATTCTGCCGTCGAGGAGGACTACAGCGCCGTCGGCGGCGGTTACACCAAGTGATCCAGGTGAGGGCTGCTGC
CTTTAGATCTGGGGTTAGAACTAGGGTGCTGTGTCATGCAGGGCTAATTGTAATCTTTATCTGAATCAGTGTTTGCCTGT
TC--TTTTAGAATCAAATGTAGATTCGGGGCGTCAGTACGTGTG--TATAGTTGTTAATCCAACCCTGCTTTGTGAAATG
AGATATTCTGCCTTGTTGCAACTCGTGAAATAGTTAGCTAATTATGATGGTTGGTTCGACAGTAACCCAACTTCATCACC
ATCTTTTTAGAGGGAAATGCATCATGCGGCGTAAGTTTTTAGTTATGGCCCGAAGTCAAGGTTAAGTATATCATTGTGAG
TTGCTAA-------------------------------------------------------------------------
----------------------------------------------------------GTCTCTGGTTTTCAAGTGTATA
TCAAAGATATATTGGTTGGCTTGAACATCGTGATATAAAATGAGGATGTTGTTTAAACGAGCTACGAGAATCACAAATCC
TGTTTTCCATTCCCTTTGAGCCTACTGACACCACAAGAATCCATTTCCAGCATCAGCCTACCCTATCCTTTCAAAACAGA
TGGCTTGCGCCTGATGGTTGATGTGGGGAACCATTCGAACCACTCACAACTTATTGCATGACAACATCTAATCAAAGCAA
AAGAAAGGATGTCAGAAAGTTAGGAATAATCCAAACTACAAAGTTCATTTTGTATACTGCAGGCGGTTCTATTTCTTTCT
TGATCGGAGTTCTGGATATGGGCTTATATGGTTCGAGTGAACCAGGATTAGATTTGGAGTGATAAATTAATCAATCATAC
CCTGGACTTCCCCCAAGGTGATACCGAAGGTTACCTCCTTTTGTGCACCCCTCA---CCTCCTCCATGAGGATGATCCAC
TGGATTCATTGCAAATATGGACGGAGAGCGGCCTCAAGTTTTTTTCGGGGTCCTCGAGATCGCATTTTAGGCCGAGTAGA
GATGCTTGGGAGTCTAAAACAAATGCGATGGACATGGACATGGACATGGCCAAGGCTCTAGGATTTTTATATTTTGTTTA
TTGCATGCATCTCTTCCAGGGTCTGTTGCTAT
>SNPs
-------------------------------------------------------S------------------------
------------------------------------------------------S---S---------------------
----------------------S----------------------------------------S----------------
----------------------------------------S---------------------------S-----------
-----------------------------------------S------------------------S-------------
-------------------S------------------------------------------------------------
-----------------------S--S------S----S----------S--------------------S---------
----SSSS-----S---S---------------S-------S------SS---S--------S----------S------
-S----S--------------S----------S-------SSS-------------S-----S----S------------
---S----S-------S-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------
S--------SSSS----------------------------------------S--------------------------
---------S--------------------------S-------------------------------------------
----------------------------------------------------------------------S---------
-----------------------------S--------------------------------------------------
------------------S-------------------------------------------------S-------S---
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-----------------------S--------------------------------------------------S-----
---------------S-------------------SS-------------------------------------------
----------------------------------------S---------------------S-----------------
-S------------------------------------------S----------------------------------S
----S-S--------------S--S-----------S------------S----------S-------------------
---------------------------S---------------------------------------------------S
--------S-SSS-S-----------------------------------------------------------------
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-----------------------------S-S------------------------------------------------
---------------S-------------------------SS-------------------------------------
--------------S------------S---------------------------S------------------------
---------------------------------------------------S-----------S---------------S
----S--------------------------------------------------------------------------S
------------S--------------S----------------------S---SSS-----------------------
-----------------------------------------------S-------------S------------------
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>forward_183
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---GGTAATCAACCTCCAGCCCC---------------------------------------------------------
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>reverse_1376
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---------------TGTCGAGTACAGCGAAGTCG---------------------------------------------
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>forward_1070
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---------CTGATCCAGACATTCCGCAAG--------------------------------------------------
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>reverse_2245
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----TGGAGTTCTGGGTATGGGCT--------------------------------------------------------
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