>input_sequence_81501
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---ATGGT------------------------------------GCCGGAGCATGGTGATGATGGTGATGGATCGGCGAC
GGTGCGGGACTGTGGTGATGATGGTGGTGGATCGATGATGGAGACGGAGCTTGGTGATGGTGGTGGTGGCTCGGTGAGTG
GGCCGGAGCATGGTGAT---GATGGTGGTGGCCCGACGAGTGGGCCGGAGCATGGTGATGTTGGTGGTGTCCCGCGTGGG
CGGGAGCAGGCGCCGGCGCTGGCCCGTGATGGCGATGATGGCTTGGCGCCGGGGCAAGATGGCCATGATGGTGAGTGGGG
CTTGGTGCTTGAGCCGGCGCGTGCTGGTGCTCCTTGTGCGCCAAGGAGAGCGCGGCCAGCGTGGCCAGCACCAGAGCCAT
CACCACAGCGGTTGGCGACAGAGAAGTCGCCATGGCGATAA---------------------------------------
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>chr2A_1_TraesCS2A01G349500
ATCTTGGGTATGCTCCTAAGCCCGGTATCCAATTAATAATGGAGCACCTAATAATTTAATTGGAACGAGCAATGGTAATA
GAAGTTCTTTGACGGAACTCTAAAAA-CTTTAGAACTACTCAAAATGAGCTGGAAAAAACATTTACTAAAATCTTAAAGA
ATCGTGATGGCTTACTCGGTCAAATGGCCGATAGGATTGTTGGACTCACTAACGATATGCGTGTTGTAGAATAAATGACT
TGTAGCATGGAAGCACGTGTTGCTAAAACTGCAGAGAGCCAAAGA-GTGATTCTAGCCAAGTTTGCTGGGAAGACGGAAC
CTAATCCAGTTGAGGGTGTCAAGATGATGAGAAATAGCGAAGAATTTTCTAGGAGCTCGGCAAGTGTTA-ATATCAGAAC
CTTCATATTTTGGAACAAACTTTGTAAAGATGTTGACTCTCAAGCATCTGCTCCCCGACGTATCAAACGACGAGGCGTAA
AAACACTTTGTTGATCAAGTTGCATATAAGGTACGTGAATTGGATGCTAAAAATAAAAAGCTATATGGTTAGCTTCTGAC
CA-AACAAGAGGATATATTCGAGACAACAAGTGATCTAGGTTCAGTGC--TTTATGTGATCTAGGTGTTTGTTTTTGTAC
TATCCCCAAATCCGTTTATGATAATCTCAATCTTGGTTCGTTTGTTACTACTGAAATTAAGTTGAATATGGCAAATCCTA
CCT-------------------------------------AAATTAATGATTGCCATCTCATTATTGTTATGCCTAAACA
TCCCATTGCACCAACCACACTAGGTAGGCTGTTCTTAAGGACCATTAAACCTACCATTAACGTTTTTGAAGAAAATATGA
GATTTGAGCTTCCGTCAAATGGTCCTTTTATTAAACACTTCCCCGGGGGAAATAAGATGAAGATATACATAGGAAATCGT
ATAACTCTAAGTGTCTAGCTCCTTGGCGTCGAGGTGGACTGGGGACGACGCTGGAGCGTGGTGACGATGGTGGTGGACCG
ACGATGGT------------------------------------GCCGGAGCATGGTGATGATGGTGATGGATCGGCGAC
GGTGCGGGACTGTGGTGATGATGGTGGTGGATCGATGATGGAGACGGAGCTTGGTGATGGTGGTGGTGGCTCGGTGAGTG
GGCCGGAGCATGGTGAT---GATGGTGGTGGCCCGACGAGTGGGCCGGAGCATGGTGATGTTGGTGGTGTCCCGCGTGGG
CGGGAGCAGGCGCCGGCGCTGGCCCGTGATGGCGATGATGGCTTGGCGCCGGGGCAAGATGGCCATGATGGTGAGTGGGG
CTTGGTGCTTGAGCCGGCGCGTGCTGGTGCTCCTTGTGCGCCAAGGAGAGCGCGGCCAGCGTGGCCAGCACCAGAGCCAT
CACCACAGCGGTTGGCGACAGAGAAGTCGCCATGGCGATAAGATTTGAGAGTGGTGGTGGTGGTGGTATTGCTATTGTGG
C------AGTCGGAGAGCGCGTCTATATATAGCGATGAGCATGCGTATTTGAAAGACGGGAGCGGGTC------------
---GTCGTATTTACTATAGCAAATATTCAATCTTC-GCATTAATGCTTACTATAAAAATGTGATTTTGATTTATTCATTT
CTGATTGTCGAATTCTCTACACAGGAAGGAAA--TAAATTGGTGCCATTTATTCGTATCACT-------GGCAGCATTAC
AGTATGAAGATATGGACATATGACTGTGACCTGTCGAATATCGTGTGAGCCGTTGAGTATATATACGATATTTATATTGC
TGCTGGCAGAATATCTCGACCATTTATTAGAAAAT-CATAATCATGACATGATTGA---TATTATACACATCAACCTGAA
AAATAGAG-GAAAAGATCTACGGTGCTTACAGAAGACTGGAGGCATCACAGGCAACTGTCGAGGCCCAAGGGGTTGTATG
ATTCGTCGAGGTGTTGGCTGGAGCCAACCCAAATG---------------------------------------------
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------------------------------------------------------------------------TATTGCAC
GTTGGATCAACCGATGGCTCTGGGCATGCCGTGCAACGAACCCAAAAAACTCCTTTAGGGTGACCTGTAAGATTGTTGGA
CTAAC-AACGGTGTGCATGCTTTAGAATAAAGAACTCATAGCATGGAGGCACATTTTGCAAAAAATTGCAAACATTGATT
CTAGCCAAGTTTGCTGGAAAGCCGGAACCTAATCCCGTTGAGAGTGTCCAGACAATGGATGTGAGTCATTGGACAATCTT
CTTTTTTTTTTTTTGCAAACACCCCCACTGCAAGAAAATGGCACATCCATGATATTGTGGCCCGAACGAAAATATTTTCT
ATCATGAAAATGACACTTTCATGATGATAATTGACAGAGAAAAAAACATGTGTCATCATGGATGTGGTGGACACCTAGTT
CTATGACCAAAAATGGGATTTACGTCCTGAGCGGGCCAGAGGCGCATCTGCATGGCGTTTTTTGGGCAGAACCCG
>chr2D_1
ATCTTGGGTATGCTCCTAAGCCCTGTATCCAATTAATAATGAAGCACCTAATAATTTAATTGGAACGAGCAACGATAATA
GAAGTTCTTTGACGG--------AAACCTTTAGAACTACTCAAAAGGAGCTGGAAAAAACATTTACTAAAATCTTAAAGA
ATCATGATGGCTTACTCAGTCAAATGGCTGGTAAGATTGTTGGACTCACCAACGATGTGCGTGTTGTAGAATAAATGACT
TGTAGCATGGAAGCACGCGTCACTAAAACTGCAGAGAGCCAAAGA-GTGACTCTAGCCAAGTTTGCTGGGAAGCCGGAAC
CTAATCCGGTTGAGAGTGTCAACATGATGAGAAATAGCGAAGAATTTTCTAGGAGCTCGGCAAGTGTCA-ATATCAGAAC
CGTCATATTTTGGCGCAAACTTTGTAAAGATGTTGACTCTCAAGCATCTGCTCCCCGACGTATCAAATGACGAGGCGT-A
AAACACTTTCTTGATCAAGTTGCATATAAGGTACGCGAATTGGATGCTGAAAATAAAAAGCTATATGGTAAGCTTCTGAC
CA-A-CAAGAGGATATATTTGAGCCAACAAGTGATCTAGGTTCAGTGC-TTTTATGTGATCTAGGTGTTTGTTTTTCTAC
TATCCCCAAATCCGTTTATGATAATCTCAATCTAGGTTCGTTTGTTACTAGTGAAATTAAGTTGAACATGGCAAGTTCTA
TCT-------------------------------------AAATTAATGATTGCCATCTCATTATTGTTATGCCTAAACA
TCCCATTGCACCAACCACACTAGGTAGGCTGTTCTTAAGGACCATTAAACCTACCATTAACGTTTTTGAAGGAAATATGA
GATTTGATCTTCCGTCAAATGATCCTTTTATTAAACACTTCCCCAGGGGAAATAAGATGAAGATATACATAGGAGATCGT
ATAACTCTAAGTGTCCAGCTCCTTGGCGTCGAGGTGGACCGGGGACGGCGCTGGAACGTGGTGACGATGGTGGTGGACTG
GCGATGGT------------------------------------GCCGGAGCATGGTGATGATGGTGATGGATTGGCGAC
GGTGCGGGACTGTGGTGATGATGGTGGTGGATTGGTGATGGAGACGGAGCTTGGTGATGATGGTGGTGACCCGGTGAGTG
GGCCGGAGCATGGTGAT---GATGGTGGTGGCCCGGCGAGTGGGCCGGAGCATGGTGATGTTGGTGGTGTCCCCCGCGGG
CGGGAGCAGGCGTCGACACTGGCCCGTGATGGTGATAATGGCTTGGCGCCGGGGCAAGATGGCCATGATGGTGAGCGGGG
CTCGGTGCTTGAGTTGGCGCGTGCTGGTGCTCCTTGTGCGCCAAGGAGAGGGCGATCAACGTGGCCAGCAACAGAGCCAT
CACCACGACGGTTGGCGACAGAGAAGTTGCCATGGCAAGAAGATTTGAGAGTGGTGGTGGTGGTGGTATTGTTGTTGTGG
C------AGTTGGGGAGCACGTCTA--TATAGCGATGAGCATGTGTATCTGGAAGAGGGGAGCGGGT-------------
--GGTCGTATTTACTATAGCAAGTATTCAATCTTCCGCATTAATGCTTACTGTAAAAATGTGATTTTGATTTATTCATTT
CCGATTGTCGAATTCACTATACAGGAAGGAAA--TAAATTGCTGCCATTTATTTGTATCGTT-------GGCAGCATTAC
AGTACGAAGATATGGACATATGACTGTGACCTGTCAAATATCGTGTGAGCCGTTGAGTATATATACGATATTTATATTGC
TGCC-GCAGAAAATCTCGGCCATTTATTAGAAAAT-CATAATTACGACATTC----------------------CCTAAA
AAA-----------------------------AAGACTGGAGGCATCACAGGCAACTGCCGAGGCCCAAGGGGTCGTATG
ATTCGTCAAGGTGCTGGCTGGAGCCAACCCAAACTAAACCCATTAAGCTACGCGTGAAGGGCGGCCAACCAGCTATGCCA
CGTGGCGCAAGCTGGTTGGCCGCGGTGAGAATTCTTTTGGAATTTTTTTTAGATGAAGGCATGAATTATTTTTTAAATGT
ATTTTTTTTCTTTTTAAATGGAGGTGAGGACCTCTGGTACTTTTTAAATGGAGGGTTATGCAAAATAGCACTCGCTGGTA
TTTTTTAGAGGAAGGAAATAAAGGTGGAGATTATTTTTCTTGAGATGTTTTTTTTAGACAAAGACGAGGACTCTATGTAT
TTTCTTTAAATGAAAATGTGCGCACAACTTTATTTTAAGCGGCGCTACAGGGTGGCGCCCCAACCACTAGTTTATTGCAA
GCTGGATCAACCGATGGCTCTAGGCATGCCGTGCAACGAGCCCCAAAAACTCCTTTAGGGTGACCGGTAAGATTGTTGGA
CTAAC-AACGGTGTGCATGCTTTAGAATAAAGAACTCCTAGCATGGATGCACACTTTGCAGAAA-TTACAAACATTGATT
CTAGCCAAGTTTGCTGGAAAGCCGGAACCTAATCTGGTTGA--GTGTCCAGACAATGGATGTG-----------------
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>chr2B_1
ATCTTGGGTATGAACCTAAGCCCCGTATCCAATTAATAATGGAGCACCTAATAATTTAATTGGAACGAGCAACGGTAATA
GAAGATCTTCGACGAAACTCTTAAAACCTTTAGAACTAATCAAAATGAGCTGG-AAAAACATTTACTAAAATCTTAAAGA
ATTGTGATGGCTTACTCGGTCAAATGCCTGGTAAGATTGTTGGACTCACTAATGATGTGCATGTTGTAGAATAAACAACT
TGTTGCATGGAAGCACACGTCGCTAAAACTACAAAGATCCAAAGATGTGATTCTAGCCAAGTTTGCGAGGAAGCCGGAAC
CTAATCTGGTTGAGAGTGACAAGATGATGAGAAATAGAGAAGAATTTTCTAGGAGCTCGGTAGGTGTCATATATCAGAAC
CTTCATATGTTGGCATAGACTTCGTAAAGACGTTGACTCTCAAGCATCTACTCCCTGGCGTATCAAATGATGAGGCATAA
AAACACTTTGTTGATCAAGTTGCATATAAGGTACGTGAATTGGATGCTGACAATGTAAAGCTATATGGTAAGCTTGTGAC
CA-AACAAGAGGGTATATTTAAGCCAACAAGTGATCTAGGTTCAGTGC-TTTATGTGA--CTAGGTGTTTG-TTTTCTAC
TATCCCCAAATCCATTTATGATAATCAGATTCGTGGTCCATTTGTTACTAGTGAAATTAAGTTGAACATGATAAATTCTA
CCT-------------------------------------AAATTAATGATTGCCCTCTCATTATTGTTATGCCTAAACA
TCTCATTGCACCAACCATACAAGGTAGGATGTTCATAAGGACCATTAAAGCTACCATTAACGTTTTTGAAGGAAATGTGA
CATTTTATCTTCCATCAAACGATCCTTTTACTAAACACTTGCCC-GGGAAAACAAGATGAAGATATACACAGGAGATGGT
ATAACTCTAAGTGTCCAGGTCCTCGGCATCGAGATGGACCGAGGAAAACGCTGGAGCGTGGTGGCGATACTGGTGGACCG
ACAATGGT------------------------------------GCCGGAGCATGTTGATGGTGGTGATGGATCGACGAT
GGTGCCAAAGTGTGGTGATGATGGTGGTGGATCGGTGATGGCGCCGGAGCTTAGTGATGATGGTCGTGGCCTA-------
-----------------------------------GCGAGTGGGCCGGAGCATGGTGATGATGGCGGTGCCCC-------
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>chr2B_467
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---------------------------------------------------------------------ACGAGGCGTAA
AAACACTTTGTTGATCAAGTTGCATATAAGGTAGATGAATTGGATGCTGGAAATAAAAT-CTATATGGTAAGCATCTAAC
CAAA-CAAGAGGATATATTTGAGCCAAGAAAGGATCTAGGTTCAATTATTTTTATGTGATCTAGGTGTTGGTGTTTCTAC
TATCCCAAAATCCATTTATGATAATCTCAATCTAGGTTCG-TTGTTACTAGTGAAATTAAGTTGAACATGGCCAATTCTA
CCTTACACAAGTGTAAGGATTAAGCATGGTGTAGTCATTAAAATTAATTATTGCCCTCTCATTATTGATATGCCTGAACA
TCCCTTTGCACCAACCACACTAGGTAGGCTGCTCTTCAGAACCATTAAAGCTACCATTAAAGTTTTTGAAGGAAATGTGA
GATTTGATCTTCCGTAAAATGA---TTTTATTAAACACTTCCCCGGGGAAAATAAGATGAAGATACAAATAGGAGATGGT
ATAACTCTAAGTGTACAACTCCTTGGCGTCGAGGTGGACCGGGGATGGCGCTGGAGCATGGTGACGATGGTGGTGGACCG
GCGATGGT------------------------------------GCCGGAGCATGGTGATGATGGTGATGGACCGGCGAT
GGTGCGGGACTGTGGTGATGATGGTGGTGGATCGGTGATGGAGCCGGAGCTTGGTGATGATGGTGGTGGCCCGGTGAGTG
GGCCGGAGCATGGTGAT---GATGGTGGTGGACCGGCGAGTGGGCCGGAGCATGGTGATGATGGTGGTGTCCCCCGTGGG
CGGGAGCAGGCGCCGACACCGGCCCGTGATGGCGATGATGGCTTGGTGCCGGGGCAAGATGGCCATGATGGTGAGCGGGG
CTCGGCGCTTGAGTCGGCGCGTGTTGGTGCTCCTTGTGCGCTAAGGAGAGTGCGACCAGCATGGCCAGCAACAGAGCCAT
CACCATGACGGTTGGCGAGAGAGAAGTCGCCATGGCAAGAAGATTTGAGAGTGGTAGTGGTGGTGGTATTGTTGTTGTGG
C------AGTCCGGGGGCGCGTCTATATATAGCGATGAGCATGCGTATTTGGAAGAGGGGAGCGGGTC------------
---ATCGTATTTACTATAGTAAGCATTCAATCTTCTGCATTAATGCTTACTATAAAAATGTGATTTTGATTTATTCATTT
CTGATTGTCGAATTCGCTACACAGGAAGGAAA--TAAATTGGTGCAATTTATTC-------T-------GGCAGCATTAC
AGTATGAAGATATGGACATATGCCTGTGACCTGTCGAATATCGTGTGAGCCGTTGAGTATATATACGATATTTATATTGC
TGATGGCGGGATATCTCGACCATTTATTAGAAAAATCATAATTATGACATGATTAA---TATTATACACATCAACCTGAA
AAATGAGAGGAAAAGATCTACGGTGCTTACAGCAGACTAGAGGCATCACATGCAACTGCCGAGGCCCAAGGGGTTGTATG
ATTCGTCAAGGTGCTGGCTGGAGCCAACCCAAATG---------------------------------------------
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------------------------------------------------------------------------TATTGCAC
GCTGGATCAACCGATGGCTCTGGGCATGTCGTGCAACGAGCCCAAAAAACTCCTTTAGGGTGACCGGTAAGATTGTTGGA
CTAAC-AACGGTGTGCATGCTTTAGAATAAAGAACTCATAGCATGGAGGCACATTTTGCAAAAA-TTGCAAACATTGATT
CTAGCCAAGTTTGCTGGAAAGCCGGAACCTAATCCGGTTGAGAGTGTCCAGACAATGGATGTGAGTCACTGGACC-----
----TTTTTTTTTTGCAAACACCCCCACTGCAAGAAAATGACACATCCATGATATTGTGGCCCGAACAAAAATATTTTCT
ATCATGAAAATGACACTTTCATGATGATAATTGAGAAA-AAAAAAACATGTGTCATCATGGATGTGGTGGACACCTAGTT
CTATGACAAAAAATAGGCTTTATGTCCTAGGCGGGTCAAAGGCGCATCTGCATGGCGTTCTTTGGACAGAACCCG
>chr2D_985
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-------------------------------------------------------------------TGGTGATGGATCG
GCGACGGCGCCGGAGCGTGGTGATGGTCATGGATCGACGTCAGCGCTGGAGCGTGGTGATGATGGTGGTGGATCGGCGAT
GGCGCTGGTGCGTGGTGATGATGGTGGTGGATCGGCGATGGCGCCGGAGCTTGGTGATGG--------------------
----------------------TGGTGGTGGATCGGTGATGGGGCCGGAGCATGGTGATGATGGCGGTGCCGCCCATGAG
CGGGAGCAGGCGCCAACACCGGACCGTGATGGTGATGAGGGCTCGGCGCTGGGGCAAAATGGCCATGATGGTGAGCGGGG
CTTGGTGCTTGAGTTGGTGCGTGGTGGTGGTCCTCGTGCACCGAGGAGAGCACGGCCAGCGGGGCCAACAATAGTGCCAT
CACTACGATGGTTGGCGAGAGAGGAGTCGCCATGGTAAGAAGCTTTGGGAGG---AGTGGTGGTGGTATTGTTGCTGTGG
TTGTGATAGTCGGGGAGCGCGTTTATATATAGTGTCGAGCATGTGTATTTGGAAGAGGGGAGTGGGT-------------
--GG---------------CAAGTATTCAATATCGCACATTAATGCTTACTATAAAAATGCGATTTCAATTGATTCGTTT
CTGATCGTCGAATTCGCTACATAGGAAGGAAA--TAAATTGGTGCCATTTATTC-------TTATCGCTGGCAGCATTAC
ATGACAAACATATGGACATGTCATTATGACCTGTCGAATATCGTGTGAGCCATTGAGTATATATATGATATTAATATTGC
TTCCCATGGAAAATCTTGACCATTTATTAGAAAAA-CTTAATTACGACATGATTAA---TATTATACACATCAACCTCAA
AAAAAGAGGGAAAAAATCTATGGTGCTTACAGCAGACTAGAAGCATCAGGGTGATG-GCCATGGCCCAAGGGGTCGTCTG
ATCCGGCAAG-TGCTGTGTGGAGCCAGCCCAAATC---------------------------------------------
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------------------------------------------------------------------------TGTTGCGC
ACTGGATCAACCGACGGCTCTGGGCATGCCATGCGATGAGCCCAAAAAAACTCCTTAGGGTGAT-GGTAAGATTGTTGGA
CTAACTAACGATGTGCATGATGTATAAGAAAGAACTCGTAGCATGGAGGCACATGTTGAGA--------AAATATTGATT
TTAGCTAAGTTTGGTAGAAAGGCGGAACCTAATCTGGTTGAGACTGTCTAGATGATGGATATG-----------------
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>chr3B_1104
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--------------------------------------------------------------GTGGTGGGTCGGCGATGG
CGCCGGAGCGTGGTGATGATGATGGTGGTGGCTTGGCGATGGTGCCGGAGCATGGTGATGATGGTGGTGCCGCCCGTGGG
CGGGAGCAGGCGCCGACGCAGGACCGTGATGGTGATGAGGACTCGACGCCGGGG---------CATGATGGTGAGCGGGG
CTCGGTGCTTGAGCCGGCGCATGGTGGTGGTCCTTGTGTGCCGAGGAGAGCATGACCAGCGAGGCCAACAGCAGTGCCAT
CACCACGACCGTTGGCGATAGAGGAGTCGCCATGGCAAGAAGCTTTGGGAGTGGTGGTGGTGGTGGTATTGTTGATGTGG
TTGTG-------GGGAGCGCGTCTATATATAGTGACGAGCACGTGTATCTGGAATAGGGGAGCGGGTTGCGGTCTTTACT
ATGG---------------CAAGTATTCAATCTTGCACATTACTGCTTACTATAGGAATGTGATTTCGCTTGATTCGTTT
CCAATCGTCGAATTCGCCATATAGGAAGGAAAATTAAATCGGTGTCATTTATTC-------GTATCACTGGCAGCATTAC
AAGACGAACATATGGACATAT-ACTGTGACATGTCAAGTATCGTGTGAGCCATTGAGTATATATACAATATTTATATTGC
TGCCCATGGAAAATCCCGACCATTTATTAGAAAAC-CATAATGAC---ATGATTAATAGTATTATACACATCAACCTAAA
AAAATAGAGGTAAAGA----------------------------------------------------------------
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>SNPs
-----------------------S------------------------------------------------S-------
---------------------S----------------------------------------------------------
----------------------------S-S--S----------------------S-----------------------
-----------------S--S----------------------------------------------------S------
-------S------S----------------------------------------------------S------------
-------------S-----------------------------------------------------S------------
------------------------------------------------S--------------------S----------
-------------------S---S----------------------------------------------------S---
--------------------------------------------------S---------------S---------S---
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-----------------------------------------------------------------------S--------
-------S-------------S----------------------------------------------------S-----
---------------S-----------------------S----------------------------------------
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----------------------------------S---------------------------------------------
-----------------------------------S-------------------------------------S------
---------------S-----------------------------------------------------------S----
----------------------------------------------------------------------S---------
------SS----------------------------S-S--------------------------------S-S------
-------------S-------------------------------------S----S-----------------------
----------------------S---------------------------------------------------------
---------------S-------------------------------------------SS-------------------
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------------------------------------------S-----------S-------------------------
----------------------------------------------------------S---------------------
-------S-----S------------------------------------------------------------------
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-S-------------------------------------S-------------------------S--------------
----------------------------------------------------------------S---------------
-----------------------------------S--------------------------------S-----SSSSSS
SSSS------------------------------------S--------------------------S------------
----------------------------------S-S-S-----------------------------------------
-------S------S--S----S-----SS-----S--S--------------------S-----S---------
>forward_468
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------------------------------------------------TGCTCCCCGACGTATCAAAC------------
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>reverse_2815
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--------------GGGATTTACGTCCTGAGCGG-----------------------------------------
