>input_sequence_81470
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ATGGGGTTCTTTACATACCTGGAAGCCAGCCATGCATCACACGAAGCATCAAAGGCCGGCGCCAGGTGCGACGAGAGGCT
CGTCATGCATCGCGTCACCGACGGCGGGTGCTTGGACGACTTCAACAAGGCGATGGAAGTGTGCCGCGGCGTCTACAGTC
CCGAAGCTTCAGAACGCGACATTCGCCGAGGCAAGGCCAAGCGCGTCGTGGACGTGGAGGCTTGCGTCAAGGCCACGGCG
GCGCTGCGCGAGTGCTTCGCCAGCAACCCCAAGCTTTTCAAGCACCAGTACCTCCGCCGCATCGACGAGGGCCTGGACCA
GGACACCAAGCCGTCCGAGTGGCAGATTTATCAAGATGAAAAA--GCCATCTTCAGGTGGTGGACTGACCTGAGGAGAAG
CTAA----------------------------------------------------------------------------
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>chr7D_1_TraesCS7D01G548600
CTGGCCAACAACGTAAAATACTCGCCACTTACAATATTCTTTAGAGGCAGGCCATGCTCATCGACTGACCTTGTTTTTTT
GGTGGGTTTTGCTCCCCATGTCCACTGGTTGCCAATATCTATTTAACAAAAATCACACGGCGGAAACCCAAAACCTCGTT
CCCCTCCAAATTCCCCCATTTCTTATAGCTAGTGTGATGTGCGCGCCGTCCCAGCTCCGTCATCAAGTTGTCACCTCGTT
GAGCGCCAGGTTCGCCGTCGTCACCTCGTGGCCGAAGGTTAGACCCGGCTTGTCCCACTCCTCTACCTCTTATTACCGCT
AACTCGTTAGATCCGCGTCACCTTCAGGGAAGGGCCCCACCAGTGCATGGGGCGTCACCAGATCTGGCAAGTGGGGGTCC
GTGCTACCGCCGGGGAAACGTGCTGCCAGATGTGGTGGGTTTGGGTTCCCGCCACCGCTAGGGACAGGTGCCACTGCCAG
ACGTGGCACGCTCTCAGCCCACCCGCAAGTGATCATTGCGAGGCTCTCGAAGGAACGCTCGTTAACTAGTTGCTCCCTCG
AATTCGATGCATATACAAACGTGCATTGCCTAAAAAAAGTATACGAACGTGCGGGCGAGGTGTGATAAAAAAATTTATGA
ACAGGCGCAGCTTCTTGGCCTTCTTCTGGACACCACGGACGCAGCCAAGCATAGGCCCAACTCAGCGAGGCACCCAGCCA
GGTCGAGGTGAGAGAAAAAAAGAAAGCCCTCGACGACGTACGAAGAAACGGACCGTAGACGTACTAAAAAAGGTAACACG
CGCGCTTGCAA------TATCGTGCATGGATTATTATAGTACACAAGATAATATTTTGACTTGACCGACGGTGCAATTAA
TCGACAAACCCGATCGTTGGTAGGTTCCAAAGTGACTATTTGATCGTTGGTAGCTATTTCTTCTATCTATATAAAGAGAA
G----------------AGAAGAGAAGAGACATAGCGATAGATCGATTTCGTTGTTA------------------ACGCC
ATGGGGTTCTTTACATACCTGGAAGCCAGCCATGCATCACACGAAGCATCAAAGGCCGGCGCCAGGTGCGACGAGAGGCT
CGTCATGCATCGCGTCACCGACGGCGGGTGCTTGGACGACTTCAACAAGGCGATGGAAGTGTGCCGCGGCGTCTACAGTC
CCGAAGCTTCAGAACGCGACATTCGCCGAGGCAAGGCCAAGCGCGTCGTGGACGTGGAGGCTTGCGTCAAGGCCACGGCG
GCGCTGCGCGAGTGCTTCGCCAGCAACCCCAAGCTTTTCAAGCACCAGTACCTCCGCCGCATCGACGAGGGCCTGGACCA
GGACACCAAGCCGTCCGAGTGGCAGATTTATCAAGATGAAAAA--GCCATCTTCAGGTGGTGGACTGACCTGAGGAGAAG
CTAAGCCAAGCTATCCTATGCATGCATGCATGCATGCATCGCCTATATATACTCTTGTACACATAGATGGGTTAGATCGA
TTATTATATTAGCATACTACTTACTGGGATATAATAAATAGGCACAAGCTATATATTTCGGTGT-GGAATTTTCCTTTTC
ATTTAGTTAGTATGGAGTTTTCCGGTATAGAC----GGATTAGATCGAT----TATTATATTAGCGATGAAGTTAGTATT
CTGG----ATATAATAGGCAAAAATTATGTCTGTGTTGAATTATCTTTTTTTTTTTCTGGAGGTTCTTGGTATCTGCACG
ATTCATATACTTGGTTCATCGTTCTCACATCGTTCGTGTCAGCTGACTAGTATAAAATCTTCCGGCCTAAACAGAATAGG
AGAGGCGGTTCATCAATCCCCCTTCGGTTTGCATATGCATCGCAAGTGATGGTGATGGATCTTATACAAATACTCTTAGA
CTAGGACCATTAAACGTTGGACTTCTTTTTAGTGCGCATGTGTGCATGACCTATACCACTCCCTCCGTCATATAATCGAC
TACGCACTGTATTTGCAGACGGAGATGAATTATAAAGTTGGATATCATACACTGGATTTGTTTTGGCATTTGAGTTTTCG
TTCAATTATCTGTCGAACACTTATCTTCTTTTCTTTACTAATGAAAAAACGTAAAGTTGAGTATATGGACGGAATGTTCG
CTCGCTAGAAATTAGACACGGCGTCCATCTGGCCTATCGATTAAAAATCGGCTGCATGCATGTAGTATTTGATATACAAA
ATTTAAAAATATCGGGCGTCAGGTTTTTTTTGTTTATGTTGAGAGCGAACACGCTTATTCCCGTTTGATGTAGGAGCCGT
ACTCAGACCCGAACGCGCTTATTCAGGTTTTTTGCCGTCAGGTTTTTTGTTTATGTTGAGCGTGCGCAGACCTGTCGGAC
CCCCCGCTATCTCCTTAGCCCCTTGCCTCTCGCGGCGGGCAGCTCATGCCTCCGACT
>chr7B_777
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--------------------------------------------------------AGACGTACTAAAAAAGGTAACACG
CGTGCTTGCAACGCACGTATCGTGCATGGATTATAGTACAGGACAACAA-----TTTGACTTGACCGACGGTGCAATTAA
TCGACAAAACCCGATTCTC-----------------------------GGTAGCTATTTCTTCTATCTATTTAAAGAGAA
GGGAAAGAGAAGAGAAAAGAAGAGAAAATACATAGCCATTGATTGATTTCATTGTTACCCGTAGCTAGGTAGCTAACGCC
ATGGGGTTCCTTACATACCTGGAAGCGAGCGATGCAGCAAACGAAGCATCAAAGGCCGGCGCCAGGTGCGACGAGAGGCT
CGTCATGCATCGCGTCACCGACGGCGGGTGCTTGGACGACTTTAGCAAGGCGAGGAAAGTGTGCCGCGGCAGCTACAGTC
CCGAAGCGTCCGAGCGCGACATTCGGCGAGGTGACGCCAAGCGCGTCGTGGACGTGGAGGCTTGCGTCAAGGCCACAGCG
GCGCTGCGCGAGTGCTTCGCCAGCAACCCCAAGCTTTTCAAGCACCAGTACCTCCGCCGCATCGACGAGGGCCTCGACCA
GGACACCAAGCCGTCGGGGCGGCAGATTTATGAAGATAAACAA--GCCATCTTCAGGTGGTGGACTGACCTGAGGAGAAG
CTAAGCCAAGCTATCCTATGCATG--------CATGCATCGCCTATATATACTCTTGGACACATAGATGGGTTAGATCGA
TTATTATATTAGCATACTACTTGCTGGGATATG----ATAGGCACAAGCTAT----TTCGGTGT-TAAATTATCTTTTCC
GTTTAGTTGTT---GAGTTTTTGGGTATAGAC----GAATTAGATTAGATATATATAATATTAGCGATGAAGTTAGTATC
---G----ATATAATAGGCAAAAGTTAGTTCTGTGTTTCATTATGTTT--------------------------------
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>chr1B_1029
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----------------------------GCCGTGCATCGCAGGAAGCAGCAATGGCCGGCGCCAGGTGCGACGAGAGGCT
CGTCATACATCACGTGACCAACGGTGGATGCTTCGACGACTTCAACAAGGCGATGGAAGAGTGCCACGGCCGCTACAGTC
CCAACACGTCACAACTCGACCTGATCCGAGGCGTCGCCAAGCGCGTCGTGGACGTGGAGGCGTGCATCAAGGCCACGGCG
GCCCTGCGCGAGTGTTTTGCCGGCAACCCCGCGGTGTTCAAGCATCAGTACCTCCGCCGCATGGACGAGGGCCTCGACCA
GGACACCAACCCGTCGCC--GGATGATATTTCAAGGGATGAACGTGCCATGTTCAGGTGGTGGACTGGCATGAAGAGAAG
CTAATCAAGCATACTCGTATAG----------------------ATATATAGAC----------AGATGGGTTAGTCG--
--ATTATATTAGCATACTACTTGCTGG-ATATAATTAATAGGCACAAGCTAT----TTCGGTGTCTAATTTCTCTTTTCC
TTTTAGTTGTC---GAGTTCTTTTGGTATTGTAAGAGGATTAGATCGATCACACG---TATGAGCGATGAAGTTACTATA
TACTGGATATATAATAGGCAAAAGTTATG---------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------
--S-------------------------------SS--SSSS----S-SSSSSS--------------------------
--------S--SSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------S---------
--------------------------S-S-------S--S---S------S-----------------------------
---------S----------------S-----------------------------------------------------
----------------------------------------------------------------------SS--------
-------S------------------------S-S---------------------------------------------
--------------------------------------------------------------------------S-----
---------------S-S-S-----------------S------------------------------------------
------------------------SSSSSSSS-------------------------S----------------------
----------------------S------------S----------------SSSS---------SS----S--S---S-
S-------SS-SSS-------SS---------------------------------S----------------------S
SSS--------------------S-------------SS-----S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_704
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--------------------------------------------CCAAGCATAGGCCCAACTCA----------------
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>reverse_2003
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--CGCACTGTATTTGCAGACGG----------------------------------------------------------
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