>input_sequence_81445
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-----------------------------------ATGATGTGGTCTTCGAGCAAGCAACAAGGAGGAGACCGAGAAGAA
TGGAAGCAGCACAAGATGGTAAAAGAGGTGAAGAAGAGTGAGACACCCATCTTCACGTATCAGCTCCCCTTCCATTCTCT
CCCCCTTAACAAAGTCAAGAACATCGAGGTCGACCGCCTGAGGCTGTCCTTCACGACGCCGAAAAATTCTACGCTGGTCC
CCGTTGATTCCGGTTCTGATGAAGAGAGTGACGAAGATCAAGGCTGTTCGGACATCGATTCT------------------
---------------GATAAGCCTATGGACGAAGTGTTAGATCACATCTGTTGTGGTCTGCATGCTATTCCCCGGAAAAA
TAAAGCAAGATCGGCCAAGAAAAGATCCCACAAGCTCAGCTCTAGGAAATTCTACAAAATATTCAGCTGA----------
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>chr4D_1_TraesCS4D01G102800
ACGGACACAAACCGCGGCCCAACGCGCGGGCGCAAACAGACAAATGTCTGTTTTTCGTCCGCTTTCGACCCAACCCCGGC
CCAAGTTTGGGCCGCGTTTGCGGCCAAACGGATAGCGCGCGCCCTTGTCCTCTCCCGGCCCGCCCGTCGGTAGCACAGCC
ATCTCACTTTCCCTCCATTTCGTCCAAACCTTCCCGCGCGCCCCTTCCTCTCCCTCCTCCATGGACGGTGACCCAACGAA
CCCCAGCGATGCGGGCGCGGCCGCGCGCCCCGCGGCGAAGAAGAAAGGTCCCAAGGGTCCCAGGAAGCCTCGATCTGAGT
GCACGCCGGCGGAGATCGCCTTCCTCGACAAAGAAGCGGCGAAGAGAAGGGGCCGGCGGGCAAAGATGAAGGAGATGAAG
GCGGCTGAGGCCTACACCGTCGCGGCCAATATCCTTTTGTTCTCACGTTTGCATGCAGGTGGACAAGATGCAGTCACGCG
ACGCAAACCCAAATCCAAACGGACACAGCCCCATTCCCACACTCAAACGGACAAAATACGGACGATACGGATATCCGTTT
AGGGTCGTGCGTTGGAGTTGGCCTTGACGGGAGGGCCGGTTGAATGCCCGCCAAGGCATTTTTCCTCTCCCCGTACAAGT
GCAAATGGATAGCGACCTTGGCAACCAAGAAAATGTATAGCGACAAGATTCGTCAGACAAGTCAGCGACGAAGAACCTTG
GCAACCAAGGCGCGCGGCAGCCACCGTGGCGATCAAGTC-AAATAATCATCTGACCTCGTGCTTCCGCTCACATCGGTCG
TTTTCGTCCTGGACGAACCTTCACGCCGCTTTCTCCCCTCAGCTTCTCTCTC-----------CAACTT-----------
---------------------------------------------------GTATATAAGTGTCGCACTACTAGTCTAGT
AGCATCCTCATCGTAGCAGCAAATAGCACAGGAAGCAACAACACTTGAGAGAGAACCCGAAACACACACACACACAC-AC
ACAGGGGGAGGGGGAGAGGGAGAGTGGCTGAGGTGATGATGTGGTCTTCGAGCAAGCAACAAGGAGGAGACCGAGAAGAA
TGGAAGCAGCACAAGATGGTAAAAGAGGTGAAGAAGAGTGAGACACCCATCTTCACGTATCAGCTCCCCTTCCATTCTCT
CCCCCTTAACAAAGTCAAGAACATCGAGGTCGACCGCCTGAGGCTGTCCTTCACGACGCCGAAAAATTCTACGCTGGTCC
CCGTTGATTCCGGTTCTGATGAAGAGAGTGACGAAGATCAAGGCTGTTCGGACATCGATTCT------------------
---------------GATAAGCCTATGGACGAAGTGTTAGATCACATCTGTTGTGGTCTGCATGCTATTCCCCGGAAAAA
TAAAGCAAGATCGGCCAAGAAAAGATCCCACAAGCTCAGCTCTAGGAAATTCTACAAAATATTCAGCTGAGGG-CCCTTT
TTTTGGAGTGTACAAGGGATCTCGAGGACTGGCTGAATTCAGATAGCCTCCTCTTTGGTCAAAGTGTACAGTTTAGATTT
CATTGCTGATTCTCCATACATTGTAAAATTTGTACGCGCATATGTATAGCTTCTGATCTTGAATAGTAATCATCTTG---
--TTTGGCAATGTGTGTGTGCCAGGTTTGTGCGTGTAGCTCCCCGCAAAAAAAATTAAGGTTTATGCGTGTAGGGCAGTC
TGCCTCAAGAAACCTTGCTGCCGACCGAAAAAACTTGACTTTGGAAA--------ATGTTCTTTTTTTAG----------
-----------GACGTTTTATTAACTTAATATATGTAGCATCAAGCGGATACAACACATCATGACCGACACCCAGCCTCT
GCATATCCAAGATGCACACAACCGAAGGTAACAAGTCAAACTAAAAATAAAACAAAACGACAAGTAGGAGAACTACTAAC
CGAAGCAAACTTGTAATTCCACTTGCCGCCACCACAGGCTTAATAGGATGAAGCGTGGGATGGCAATTTGCCGGATTTTG
AGACACTAGCACAAAGACAACTATACAGATGATCGAGCATAGTAGGAACATTCAGCTTAGATAGCTCAAATTCGAGCTGG
GTATTTAGAAATATGA-CACCCAAGACGGCTAATTTTATAAATCGCCACGAATTGCTATTACATGTGAGACGGTCTATTT
TGACGTCCGATTCGAAACAGAAGCAATACGATGTGAGACAAGCCTCGTTATAAACATGTCTCAAATAGTTTTTGTCCAGT
ATAACGAGCCAATAT-----------------------------------------------------------------
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----------------------------------GAGGCAGCCCTCAAATTGTAGGTTCACATTTTCTCACCCTGTCGGC
TTGCCTCCCAACAAAAAT-GGACAGACTATGTACCGGTTGCCTGTTTTTGTTTTCGGGCTAGTCAATTTCTGCTCTACCG
TT--TTTTTTATCCAATGGACAGCATGTGCAACCCAAATCGGCTGACCACACGTTTGTTTCACTCGGTTTTCATCAACCA
TCCAAAGT
>chr4A_596
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-----------------------------------CCGGTTGGATGCCCACCAAGGCATTTTTCCTCTCCCCGTACATGT
GCAAATGGATAGCGACCTTGGCAACCAAGAAAATGGATATCGACAAGATTCGTCAGACGAGTCATCGACGAAGAACCTTG
GCAACCAAGGCGCGCGGCAGCCACCGTGACGATCAAGTC-AAATAATCATCTGACCTCGTGCTTCCGCTCACATCCGTCG
TTTTCGTCCTGGACGAACCTTCACGCAGCTTTCTCCCCTCAGCTTCTCTCTCTTCGCCCCTCACAACTT-----------
---------------------------------------------------ATATATAAGTGTCGCACTACTAG------
---ATCCTCAACGTAGCAGCAAATAGCACAGGAAGCAACAACACTTGAGAGAGGGCCCAACACACACACACACACAC-AC
ACACA--------GAAAGAGAGAGTGCCTGAAGTGATGGTGTGGTCTACCAGCAAGCAACAAGGAGGAGAGCGAGAAGAA
TCGAAGCAGCACAAAATGGTAAAAGAGGTGA---------AGACACCTATCTTCACGCATCAGCTCTCCTTCCATTCTCT
TCCCCTTAACAAAGTCAAGAACATCGAGGTCGACCGCTTGAGGCTGTCTTTCACGACGCCGAAAAATTCTACGCTGGTCC
CCGTTGATTCCGGTTCTGATGAAGAGAGTGACGAAGATCGAGGCTGTTCGGACATCGATTCT------------------
---------------AACAAGCCTATGGACGAAGGGTTAGATCACATCTGTAGTGGTCTGCATGCTATTCCCCGGAAAAA
CAAAGCAAGATCGGCCAAGAAAAGATCCCATAAGATCAGCTCTAGGAAATTCTACAAAATATTCAGTTGAGGGGCCTTTT
TTTTGGAGTGTATATGGGATCTCGAGGACTGGCTGAATTCAGATAGCCTCCTCTTTGGTCAAAGTGTACAATTTGGATTT
CATTGCTGATTCTCCATACATTGTAAAATTTGTACGCGCGCATGTATAGCTTCTGATCTTGAATGGTAATCATTATTACG
TTTTGGGCAATGTGTGTGTGCCAGGTTTATGCGTGTAGC-----------------------------------GCAGTC
CGCCTCAAGAAACCTTGCTGCCGACCGAAAAAACTTGGACTTGGAAAATCGATGTATGTTCTTTTTTACGTGGGATATTT
CTTTTATAAATGATGTTTTATTAACTTA--ATATGTAGCATTAAGCGGATACAACACATTATGAGCGACATCCAGCCTCT
GCATATCCAAGATGCACACAATCAAAAATAATGAGTCTGACTAAATATAAAACAAAACGA--------------------
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>chr4B_643
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--AAATGGATAGCGACCTTGGCAACCAAGAAAACGGATAGCGACAAGATTCGTGAGACAAGTCAGCGACGAAGAACCTTG
GCAACCAAGGCGCGCGGCAGCAACCGTGACGATCAAGTCAAAATAATCAGCTGACCTCGTGCTTCCGCTCACA-------
----CGTCGTGGACGAAGCTTCACGCCGCTTTCTCCCCTCACAACATTATACTCCCTCCGTTCCAAAATAGATGACTCAA
CTTTGTACTAACTTTATACAAAGTTAAGTCATCTATTTTAGAACGGAGGGAGTATATAAGTGTCGCACTACTGG------
---ATCCTCGACATAGCAGCAAATAGCACAGGAAGCAACAACACTTGAGAGAGAACCCAAAACACACACACACAGACCAC
ACACAGGGCGAGTGAGAGAGAGAGTGGCTGAAGTGATGGTGTGGTCTACGAGCAAGCAACAAGGAGGAGATCAAGAAGAA
CCCAAGCAGCACAAAATGGTAAAAGAGGTGAAGAAGAGTGAGACACCCATCTTCACGTATCAGCTCCCCTTCCATTCTCT
TTCCCTTAACAAAGTCAAGAACATCGAGGTCGACCGCTTGAGGCTGTCCTTCACGACGGCGAAAAACTCTACGCTGGTCC
CCGTTGATTCCGGTTCTGATGAAGAGAGTGACGAAGATCAAGGCTGTTCGGACATCGACGACACTGTAAACAGTATAGGT
GGACAAATGACCGTCGATAAGCCTATGGACGAAGGGTTAGATCGCATCTGTAGTGGTCTGCATGCTATTCCCAGGAAAAA
TAAAGCAAGATCGGCCAAGAAAAGATCCCATAAGCTCAGCTCTAGGAAGTTCTACAAAATATTCAGCTGAGGGGCCTTTT
TATTGGAGTGTATAAGGGATCTCGAGGACTGGCTGAATTCCGATAGCCTCCTCTTTGGTCAAAGTGTACAATTTGGATTT
CTTTGCTGATTCTCCATACATTGGAAAATTTGTACGCGTCCATGTATAACTTCTGATCTTGAATG-TAATCGTCATTAC-
---TTAGCAATGTGTGTGTG------------------------------------------------------------
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>chr4B_1845
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-------------------------------------------------------------------GAGAATAACTAAC
CGAAGCAAACTTGTTATTCCACTTGCTGCCGCCACTGGCTTAATAGGATAAAGCGTGGGATGACAATTCGCCGGATGTTG
AGACACTAGCAGAAAAACAACTATA----------AGCGTAGTAGGAACATTCAGTTTAGATATCTCAAATTCGAGGTTG
GTATTTACAAATATATGCATCCAAGACGGCTAGTTTTGTGAGTTGCCACGACTTGATATTACATGTGAGACGGTCTATTT
TGACGCCTGATTCGAAACAGAAGCAATACGCAGTGAGGCAAGCCTTGTTATAAACATGTCTCAAACAGTTTTGGTCCGGT
ATAACTAGCCAATACTCCCTCCGTCCACGAATAAGTGTACTTCTATCTTTTGTCATAAGTGAAAGTTTTAAATTTTGACT
AACTATATAGTAAAGACTTGTAACATATATGACATCAAATTGGTATATTATGAATGTACATTTCAAAATGAATCTAGTGA
TACTAATTTAGTGTCATAAATGCTGCTACATTTTCCTATAAAGTTGGTCAAAATTTTAAATTTTGACTTAGGACAAAATC
TAAATGTACACTTATTCACGAACAGAGGGAGTACGAGGCATCCCTCAAATTGTAGGTTCACATTTTCTCACCCTGTCGGC
TTGCCTCCCAATAAAAATGGGACAGACTATGTACCGGTTGCCTGTTTTTGTTTTCGGGCCAGCCAATTTCTGCTCTACCA
TTGTTTTTTTATCCAATGGACAGCATGTGCAACCCAAATCGGCTGGCCACACGTTTGTTTCAGTCGGTTTTCCTCAACCA
TCCAAAGT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S------S---------------------------S--
-----------------------------------S--------------------------------------------
----------------------------S----------------------------------------------S----
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--------------------------------------------------------------------------SSSSSS
SSS-------S-----------------------------------------------S---------------------
---SS---S-S-S-----S------------S------S--------S----------------------S---------
-S------------S-----------------------------------------------------------------
S------------------------------------S------------------------------------------
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----------------------------------S----------------S----------------------------
------------------------------S---------------------------------------------S---
------------S---------------------------------------------------------S---S-----
---------------------------------------SS-----------------------S---------S-S---
----------------------------S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
S------------------------------------SSS---------------------------SS-----------
-------------S--------------SS-----------S-----------------S----S-----S---------
---------------------S-S--SS---SS----SS------S--------------SSSSSSS-----SS------
--------------S-----------S---S----S-------------S------------S-----S-------S---
-----------S---S---------SSSSSSSSSS---S----------------S-------S------------S-S-
-------S------SS---S------------S----S-S-S-S-------S---S------------------------
-----S-S----------------------SS-----S-------S-------------------S------S----S--
-----S--------S-----------------------------------------------------------------
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----------------------------------------S---------------------------------------
-----------S-----------------------------------------------S--S----------------S
---------------------------------------------S----------------S---------S-------
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>forward_224
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--------------------------------------------TTCCTCTCCCTCCTCCATGG----------------
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>reverse_2335
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--------------TGAGGCAGCCCTCAAATTGT----------------------------------------------
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