>input_sequence_81436
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---------------------------------------ATGGCGATGCTGAAGAAGAACACGAGCGCCCTGTGCTGCTT
CGTGGCCGCCCTCATGGTGGTCATGGCTGCCACCCTTCTTTTCTCCTCATGCGACGCCGACAAAAAGGTTAATCACTTAA
ATTT--TCTATTTAATTTGCAATGTCGCTGTTA---AGATCAGACGATGAAGCA-A----TCTTTTTTTCAGATTGGAGA
TCGAATCTATACATTTTTTA-A-CC-ATTTGTTTCTTTACA-CCCATATGCAGATGGATAAACCCCGTGCTTTTCCCCTG
CCGGCTTCGTGCTACTCCAAATACTTCCCAAACTGCACCGACGAGAGCTGCAAGAGGTTCTGTGGCAGCGGCAACATGTC
GCCGGTGCCCGAGGCTTTCTGCAATGACAACAACAACTGTTGTTGTCCCATTTAG-------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------
>chr3B_1_TraesCS3B01G084300
AAAAAATGCTTTAAACTTCGAATTTTGGTCACAACTACAAAAATATATTTCCAAAATTGTTCGAAATTTCAGAAAAATTT
CATAATTTTTTCGAATGTTATTTTTCCAAAAACAAT-TCAGTATTTCAAAAGTTTTTAGGGGACATTTGTTGAATTCACA
TGAGTAGTTTTGAATTTTCATCTACATTTTTCTAATACTCAAACTCTTTTTAGTTGTGAATATTTTTCAGAAATCTTGAA
TAATTTATGAATTGATGAAAAAAGTTGAATTTCATAAAAATAATTGAATTCATGAACATTGTCTGAATACAAGAACATTT
TGTTTGAATTCAGAAATATTTTTGAAATTTATGTGAACATTTTTTCAATTTAA-------TTTTTGTTATAGTCATGATT
TTTTTC-AAATTATAAATCAGAGGGACCAAAGAAAAGAATTGACAAACAAAAACATA--CTGCACTGGCTCGCTGGGACA
GGCCCCGCAGCGAGCGACGCGAGCGGTACCACTCGCTCTGAGCATACACAGCAGCACCTGTATTCTGTGGGTTAGCCCAT
GAGGCAACAACTGCAAGAAGTAATGATTCTCAAATGAAAATGTGCAAGGAGTAATCCGTACTCTAGCATATTTAGCAG--
-----------CTAAAAATATAATCTCTCTGTAAACTTTTATAACACATTTTAGGTCACTATTAAATTTGAATAAAAATC
A-TTGTCAAAGATAAGTACTAA-TAATCACAATCAGTAAG-TTCTTCCATTAGCATCCATGCAGTAGCTATCCACTTGTC
CATACACAACATA----TACATCCATTCCC-GT-AAAAAAGGATATATAT------------------------------
-CCATTTATTTGTTACTTGAATTAAAGCATTAA-TAAAACATTTAATTCATGCTTATA----GCTAGGCAGGCACACACC
AATGTATTCACGGG-TCTATATA--AACACAC--ACAAATCACAAAGAACAACACAGGGAAAAGAAGAACTGTACGTACG
CAAAGTGTAGTTAGCCTCCTCCTGTACTATACAT-----ATGGCGATGCTGAAGAAGAACACGAGCGCCCTGTGCTGCTT
CGTGGCCGCCCTCATGGTGGTCATGGCTGCCACCCTTCTTTTCTCCTCATGCGACGCCGACAAAAAGGTTAATCACTTAA
ATTT--TCTATTTAATTTGCAATGTCGCTGTTA---AGATCAGACGATGAAGCA-A----TCTTTTTTTCAGATTGGAGA
TCGAATCTATACATTTTTTA-A-CC-ATTTGTTTCTTTACA-CCCATATGCAGATGGATAAACCCCGTGCTTTTCCCCTG
CCGGCTTCGTGCTACTCCAAATACTTCCCAAACTGCACCGACGAGAGCTGCAAGAGGTTCTGTGGCAGCGGCAACATGTC
GCCGGTGCCCGAGGCTTTCTGCAATGACAACAACAACTGTTGTTGTCCCATTTAGTTA----------ATTATAAGCGCC
GCTGAAGTGGTCCGGGAAGAAATGGAGATGCCAATAATATAAGCAAGAGATCTAATATTT--TAAAATCTTTGTAAACCA
GCTTTTT---------TTGTAGTAACAA-TTTTACCATTGTGTGTCCCATTGGTTCGTGTTCTTGGAGACAAATCAAAAG
-------TAATGACTAATGAAGCTTGAACAAAAATAGTAGT-TGATACCTGCCGTGTTGATAGCATAAGCACAAGCAAGT
TTTTCAT----------------------------------------------------CTTCACCCAAATGCAAGTCTA
TTTACACTTCCAATACAGATTTGTTAACGATATTCCTACTTAGCCCCTCATTAATTTCATCAAGGATTGACAAAAAAAAA
TTGTATTTGGGGAGCGGGGGTATAAGTTACATAAATAACCTTAATTTGACATCAAAAATAGAAATGTCACATGTTTAACA
TGAACCATCAATCATTAATAAAATTCATATAAGCAAAATGTTTCAATCATATCTTAAAGGACTTTTGTAATTACTACTAT
GGTCGTCAATGAGCACATTTCTAGGATGT--GGCCAATGTTTAGGGGGTCAATCCCGAGCCATGCTCCGTCCTTGAATCA
TAATAGGGAGAGTGGCCATTGCCTACTCTACAACGATTATTCCTAGTGCATGTCCCCACTCT-ATAATGTCAAGCTTTTT
---CGGTGATGCTTTTTGGATGGCTAGACATGTGTTCAACTGTATCCAAGAGGGAGTGGTGGAGTACG--GATTATTTAA
GATGCAAGAATGGTTCCCACGGAAGGGTTGGCTCCTCCTCTTATGAGAAATGCACTGCGACTATCCAGATGTTTGCATAC
GGAATTCCTGGTGATCTTCTTGATGAGTATGCATGGATGAGTGAGTCCACATGCCTTCAATCATTGTATAGGTTCT----
---------CCAAAGTTATGA-TTGTTATGTTTGGCTCGGAGTATTTGAGAGAACCAAATGTTGCAGATACAACCT-TGG
TGTTGGCGATCAATGAATCTAGGTTCTTTC-TG-GGAATGCT
>chr3A_35
----------------------------------CTAAAAAAATATTTTCCAAAAATGCTCAAAC-TTTCAGAAAAATTT
CATAATTTTTTCAAATGTTCTTTTTCCCAAAAAATACTCAGTATTTCAAAAATTGTTCATGAAGATTTGTTGAGTTTGCA
TGAGTAGTTTTTAATTTTCATCAACATTTTT-TAGTACTCAACCTTTTTTTAATTGTGGATATTTTTCAGAATTCTTAAA
TAATTTCAGAATTCATGAAAAATATTGAATTTCATAT-AATAATTGAATTCATGAACAT---------------------
-GTTTAAATTCAAGAATAT---------TTATGTGAGCATTTTTTCTAATTTAAAACTTTTTTGTATTGTACTCATGATT
TTTTT--AAATTATAAATCAGAGGGACCAAAGAAAAGAATTGACAAAAGAAACGTACTCCTATACTGGCTCGCTGGGACA
GGCCCATCTCG------CGCAGGCGGTACCGTGCGCTCCGAGCATACACAGCGGCGCCCGTATTCTGTGGGTTAACCCAT
GAGGCA-------------GTAATGATTCTCAAATCAATAAGTGCAAGGAGTAATCCCTACTCTAGCTAAAAAATATACT
CTCTCTGTAAACTAAAAATATACTCTCTCTGTAAACTTCTATAACACACTTTAGGTTACTCTTAAATTTGAATAAAAATC
A-TCGCCAAAGATAAGTACTAA-TAATCACAATTAATAACCTTCTTCCATGAGCATCCATGCAGTAGCTATCCACTTGTC
CATACACAACATA----TATATCCATTCCCCCTAAAACAG-GATATATATATATATATATATATATATATATATATATAT
ACCATTTATTTGTTACTTGAATTAAAGTATTAA-TAAAACATTTAATTCATGCTTATAATTAGCTAGGCAGGCACAC--C
AGTGTATTTAC-GG-TCTATATA--AATACAC--ACAAATCACAAATAACAACACAGGGAAAACAAGAATTGTACATACG
TGAAGTGTAGTTAGCCTCCTCTTGTACTATACAT-----ATGGCGATGCT---GAAGAACACGAGCGCCATGTCCTGCTT
CGTGGCCGCCATCATGGTGGTCATGGCTGCCACCCTTCTTCTCTCCTCATGCGATGCCCATGAAAAGGTTAATCGCTTGA
ATTT--TCTATTTAATTTGCAATGTCTCTATTG---AGATCGGACGATGAAGCA-A----T--CTTTTTCAGATTGGATA
TCTAATCTGTACATATTTCA-AGTCAGTTTGTTTCTTTACA-CCCATATGCAGATGGATAAACCCCATGCTTTTCCCCTG
CCGGCTTCGTGCTACTCCAAACACTTCCCAAACTGCACCGACGAGCGGTGCAAGAAGTTCTGCGGTGGCGGCGACATGCC
GCCGGTCCCCGGGGCTTTCTGCAATGACGACAACAACTGTTGTTGTCCCATTTAGTTA----------ACTATAAGCGCC
TATGAAGTGTTGCAGGAAGAAATGGAAATGCCAATAATATAAGAAAGAGATTATACCTTT--CTAAATCTTTGCAAACCA
GCTTTTTCGGCAATCTTTGTAGTAACGA--TTTATCATTGTGTGTCTCATTGGTTCGTGTATGTGGACACAAACCAAAAG
-------TAATGACTAATGAACCTTGAACAAAAATAGTAGT-TGATACCTG-CGTGTTGATAGTATAAGCACAAACAAGT
TTTTCATTTATCGACTAGATGGACATGATCACGTGAGCCACTACCCTTGGCGTTTTTAACTTCATCCAAATGCAAGTCTA
TCTACACTTCCGATACACATTTGTTAATCATATTCCTACTTACCCCCTCATTAATTTCATCAAGGATTGAC-AAAAAAAG
TTGTATTTGGGGAGCGAGGGTATAAGTTGCATAAATAATCTTAATTTACCATCAAAAATCAAAATGTCTCACGTTTAAGA
TGAACTGTCAATCATTAATAAAGTTCATATAA-CAAAATGTTTCAATCATATCTTGAAGGACTTTTGTAATTGCTACTAT
GGTC------------------AGGATGT--GGCCAATGTTTAGGGGGTTGATCCCGGGCCATGCTCCAGCCTTGGATCA
TAATAGGGAGAGCGGCCATTGCGTACTCTACAACGATTATTTCCAGTCCACATCCCCACCCT-ATAATGTCAAGCTTTTC
---CGGTGACGT-TTACGAATGGCTAGACATGTGTTCAACTGTATCCAAGAGGGAGTGATGGAGTATGAAGATTACTTTA
TATACAAGAATGGTGCCCATGGAAGGGTTGGCTTCTCCTCTTATCAGAAATGCATTGCGGCTATCCGGATGCTTGCATAC
GAAATTCCTAGTGATCTTCTGGATGAGTATGCCCAAATGAGTGAGTCCACATG---------------------------
--------------------------------------------------------------------------------
------------------------------------------
>chr3D_343
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------GAATAT---------TTATGTGAACATTTTTTCGAATTTAAAACTTTTTTGTACTGTACCCATGATT
TTTTTTTAAATTTTAAATAAGAGGGATCAAAGAAAAGAATTGACAAAAGAAACATAA--CTATACTGGCTTGCTGCGACA
GGCCCATCTCG------CGCAGGCGGTACCGCTCGCTCTGAGCATACACAGCAGCGCCCGTATTCTGTGGGTTAACCCAT
GAGGCAACAAGTGCAAGCAGTAATGATTCTCAAATCAAAAAGTGCAAGGAGTAATCCCTACTCTAGCATATTTTGCAG--
-----------CTAAAAATATACTCTCTCTGTAAACTTCTATAAGACACTTTAGGTTACTCTTAAATTTGAATAGAAATC
T-TCGCCAAAGATAAGTACTAA-TAATCACAATTAATAACCTTCTTCCATGAGCATCCATGCAGTAGCTATCCACTTGTC
CATACACAACATA----TATATCCATTCCCCCTAAAACAG-GATATATAT------------------------------
-CCATTCCCC----------------------A-TAAAACAGGA----------TATAATTAGCTAGGCAGGCACAC--C
AATGTATTTAC-GG-TCTATATA--AACACAC--ACAAATCACAAATAACAACACAGGGAAAAGAAGAACTGTACGTACG
TGAAGTGTAGTTAGCCTCCTCTTGTACTATACAT-----ATGGCGATGCTGAAGAAGAACACGAGCGCCCTGTCCTGCTT
CGTGGCCGCCCTCATGGTGGTCATGGCTGCCACCCTTCTTCTCTCCTCATGCCGTGCCCACGAAAAGGTTAATCATTTGA
AATT--TCTATTTAATTTGCAATGTCTCCGTTG---AGATCATACGATGAAGCA-A----T-TTTTTTTCAGATTGGATA
TCTAATCTCTACATTTTTTTAA-TC-GTTTGTTTCTTTACA-CCCGTATGCAGATGGATAAACCCCGTGCTTTTCCCCTG
CCGGCTTCGTGCTACTCCAAACACTTCCCAAACTGCATCGACGAGCGGTGCAAGAAGTTTTGCGGCGGCGGCGACATGCC
GCTGATCCCCGGGGCTTTCTGCAATGACGACAACAACTGTTGTTGTCCCATTTAGTTA----------ATTATAAGCGCC
TCTGAAGTGTTCCAGGAAGAAACGGAGATGCCAATAATATAAGCAAGAGATTATACCTTT--CTAAATCTTTGAAAACCA
GCTTTTTCAGCGATTTTTGTAGTAACGA--TTTTATCATT------------GTTCGTGTATATGGACACAAACCAAAAG
-------TAATGACTAATGAAGCTTGAACAAAAGTAGTAGT-TGATACCTG-CGTGTTGATAGCATAAGCACAAACAAGT
TTTTCATTTATCGACTAGATGGACATGATCACGTGAGCAACTACCCTTGGCGTTTTTAACTTCACCCAAATGCAAGTCTA
TCTACACTTCTGATACACATTTGTTAACGATATTCCTACTTACCCCCTCATTAATTTCATCAAGGATTGAC-AAAAAAAA
TTGTATTTGGGGAGCGGGGGTATAAGTTGCATAAATAATCTTAATTTACCATCAAAAATCAAAATGTCTCACGTTTAAGA
TGAACTATCAATCATTAATAAAGTTCATATAAGCAAAATGTTTCAATCATATCTTAAAGGACTTTTGTAATTGCTACTAT
GGTCGTCAATGAGCACATTTTTGTAGAATTTAGCCAATGTTTAGGGGGTTGATCCCGGGCCATGCTCCGGCCTTGAATCA
TAATAAGGAGAGCGGCCATTGCCTACTCTATGACGATTATTTCCAGTCCACGTCCCCACCCT-ATAATGTCAAGCTTTTC
---CGGTGACGT-TTACGAATGGCTAGACATGTGTTCAACTATATCCAAGAGGGAGTGGTGGAGTATGATGATTACTTTA
GATACAAGAATGGTGCCCATGGAAGGGTTGGCTTCTCCTCTTATCAGAAATGCAT-GCGGCTATCCGGATGCTTGCATAC
ATAATTCCTGGTGATCTTCTGGATGCGTGTGCCTAGATGAGTGAGTCCACATGCCTTGAATCATTGTACAGGTTCT----
---------ACAGAGCTTTGG-TTGTTGTGTTTGACCCGAAGTACTTCAGAGAATCAAATGTTGTAGACACAACCCAAGT
TGCTGGTGATCAATGAATCTAGACGCTTTC-TG---------
>chr3B_678
--------------------------------------------------------------------------------
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-------------------------------------------------------------TTACATATGAATAAAAAAT
GGTCGTCAAATATATGTTTTAATTAATCACAATTTATAAG-TTCTTCCATGAGGATCCATACAGTAGCTATCCATATGTC
CATGCACAACATA----TACATCCATTCCCTGCAAAAAAGAGATATATAT------------------------------
-CCATTTATTTGTTACTATAATTAAAGCATTAA-TAAAACATTTAATTCATACTTAAAATTAGCTAGGCGGGCACAC--C
AATGTACTTAC-GGGTCTATATATAAACAACACAACAAATCACAAATAACAACACAGAGAAAAGAAGAGCTGTAGGTACG
TTAGGTGTGGTTAGCCTCCTCCTGTACTGTACATCGATCATGGTGATGCTGAAGAAGAACACGAGCGCCCTGTGCTGCTT
CGTGGCCGCCCTCATGGTGGTCATGGCTGCCATCCTTCT---CTCGTCATGCGACGCCTGCAAAGATGTTAATCACTTAA
AATT--TCTATCTAATTTGCAAAGTCGCCGTCG---AGATTAGATGATGAAGC--A----A--TTTTCT-----------
----ATCTTTACTTTTTTTTCA-TC-GTTTGTTTCTTTACA-CCCATATGCAGATGGATGAGCCCCATTCTTTTCCCCTG
CCAGCTTCGTGCTACTCAGAACACTTTCCAAACTGCACCGACGAGCGGTGCAAGAAGTTCTGCGGTGGCGATGACATGTC
GCCGGTCCTTGGGGCCTTTTGCAACAACGACAACAACTGTTGTTGTCCCATTTAGTTA----------ATTATAAGCGTC
GTTGAAGTGATCCAAGAAGAAAT---------------------------------------------------------
--------------------------------------------------------------------------------
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>chr3D_678
--------------------------------------------------------------------------------
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-------------------------------------------------------------TTAAATATGAATAAAAAAT
GGTCATCAAATATATGTTTTAATTAATCACAATTAATAAG-TTCTTCCATGAGGATCCATGCAGTAGCTATCCACATGTC
CATGCACAACATA----TACATCCATTCCCCAC-AAAAAGAGATATATAT------------------------------
-CCATTTATTTGTTACTATAATTAAAGCATTAA-TAAA------AATTCATACTTAAAATTAGCTAGGCAGGCACAC--C
AATGTACTTAC-GGGTCTATATATAAACAACACAACAAATCACAAATAACAACACGGAGAAAAG--GAGCTGTAGTTACG
TTAAGTGTGGTTAGCCTCCTCCTGTATTGTACATCGATCATGGTGATGCTGAAGAAGAACACGAGCGCCCTGTGCTGCTT
CATGGCCGCCCTCATGCTGGTCATGGCTGCCACCCTTCT---CTCCTCATGTGACGCCTGCAAAGAGGTTAATCACTTAA
ATTT--TCTATCTAATTTGCAAAGTCGCCGTCG---AGATCAGATGATGAAGC--A----T-TTTTTGTCAGATTAGATA
TCTAATCTTTACTTTTTTTCCA-TC-GTTTGTTTCTTTGCA-CCCATATGCAGATGGATGAGCCCCATTCTTTTCCCCTG
CCGGCTTCGTGCTACTCCAAACACTTTCCAAATTGCACCGAGGAGCGGTGCAAGAAGTTCTGCGGTGGCGACGACATGCC
GCCGGTTCCCGGGGCCTTTTGCAACGACGACAACAACTGTTGTTGTCCCATATAGTTA----------ATTATAAGCGCC
GTTGAAGTAATCCAATAGAACATGGAGATGCCAATAATATAAGCAAGAGATCAGACCTTT--TCTAATCTTTGTAAACCA
GCTTTTCCAGCAATTTTTGTAGTAACGA-TTTCATCATTGTATGTCTCATTGGTTCGTGTACGTCGAGACAAATCAAAAG
-------TAATGA-------AGCTTGAACAAAAATG---GT-TGATACCTG-CGTGTTTACAGCATAAGCACAAACAAGT
TTTTC---------------------------------------------------------------------------
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>chr3B_729
--------------------------------------------------------------------------------
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----------------------------------AGTATG-TTCTTCCATAAGTATCCAA-TAGTAGCTATCCATGTGTC
CATAGATAACATATACTTATATCCATTCCCTGT-AAAAAAGGATATATAT------------------------------
-CCATTTATTTCTTACTTGAATTAAAGCATTAATTAAAACATTTAATTCATACTTATAATTGGCCAGGCAGGCACAC--C
AATGTACTTAC-GGGTCTATATA--AGCAACACAACAAATCTCAAATAACAACACAGCGCAAAA--GAACTGCAGTACG-
-TCAGCGTAGCTAGTCTCC----CTACTGTAAATCGATCATGGTGATAGTGAAGAAGAACACGAGCGCCCTGTGCTGCTT
CGTGGCCACACTCATGGTGGTCATGGCTGCCACCCTTCTTCTCTCCTCGTGCGACGCCCGCAAACAGGTTAGTCAGTTAA
ATTTGCTATATATAATTTGCAATGTCGCCGTCGTTGAGATCGGAAGTTGGAGCACA----T--GTTTTTCAGATTAGATA
TCTAATCTGTGCATATTTTTA--TC-GTTCATTTATTTACA-TGCATATGCAGATGGTTGAGCCCCGTGCTTTTCCCCTG
CCGGCTTCGTGCTACTCCAAACACTTCCCGAACTGCACGGACGAGCGGTGCAAGAAGTTCTGCGGCAGTGACGACATGCC
ACCGGTCTCTGCGGCCTTCTGCAATGACGGCAATAACTGTTGTTGTCCCGTT----------------------------
---------ATCTAGGAGGAAATGGAGATGTCAATAATATAAGCAAGAGATCAGACTCTTCCTAAAATCTTTGTAAACCA
GCTTTTTCGGCAAAAAAAATTG--ACGA-TTTTATCATTGTGTGTCTCATTAGTTCGTGTACGTGGAGACATATCGAAAG
-------TAATGA-------AGCTTGAACAAACATG---GTGTGTTACCTG-CGTGTTGACAGCA---------------
--------------------------------------------------------------------------------
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>chr3A_753
--------------------------------------------------------------------------------
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-----------------------------------------------------------TGTAGTATCTATCCATGTGTC
CATACATGACATA----TATATCCATTCCCTGT-AAAAAAGGATATATAT------------------------------
-CCATTTATTTCTTACTTGAATTAAAGCGTCAATTAAAACATTTAATTCATACTTATAATTGGCTAGGCAGGCACAC--C
AATGTACTTACAGGGTCTATATA--AACAACACAACAAATCTCAAATAACAACACAGC-AAAAA--GAACTGCAGTACG-
-TAAGCGTAGCTAGCCTCCTCCTCTACTGTAAATCGATCATGGTGATAGTGAAGAAGAACACGAGTGCCCTGTGCTGCTT
CGTGGCCACACTCATGGTGGTCATGGCTGCCACCCTTCTTCTCTCCTCGTGTGACGCCCGCAAACAGGTTAGTCAGTTAA
ATTTGCTATATATAATTTGCATTGTCGCCGTCGTTGAGATCGGAAGTTGGAGC--AC---A-TGTTTTTCAGATTAGATA
TCTAATTTGTGCATATTTTT-A-TC-GTTCATTTATTTACA-TGCATATGCAGATAGTTGAGCCGCGTGCTTTTCCCCTG
CCGGCTTCGTGCTACTCCAAACACTTCCCGGACTGCACGGACGAGCGATGCAAGAAGTTCTGCGGCGGCGACGACATGCC
GCCGGTCTCTGCGGCCTTCTGCAATGACGACAATAACTGTTGTTGTCCC-------------------------------
--------------------------------------------------------------------------------
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>chr3A_1001
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---------------------------------------ATGGTGATGCTGAAGAAGAACACGAGCGCCCTGCACTGCTT
CGTGACCGCCCTCATGGTGGTCATGGCTGCCACCCTTCT---CTCCTCATGCGACGTCCGCAAAGAGGTTAATCACTTAA
ATTT--TCTATTTAATTTGCAAAGTCGCCGTTG---AGATGAGACGATGAAGC--A----A--TTTTGTCGGATTAGATA
TCTAATCTTTGCTTTTTTTTCA-TC-GTTTGTTTCCTTGCA-CCCATATGCAGATGGATAAGCCCCATGCTTTTCCCCTG
CCCGCTTCGTGCTACTCCAAGCACTTTCCAAACTGCACCGACGAGCGGTGCAAGAAGTTCTGTGGTGGCGATGACATGCC
GCCGGTCCCCGGGGCCTTCTGCAACGATGACAACAACTGTTGTTGTCCCATTTAGTTA----------ATTATAAGCGCC
GCTGAAGTAATCCAAGAGGAAATGGAGAAGCTAATAATATAAGCAAGAGATCAGACCTTT--TCTAATCTTTGTAAACCA
GCTTTTCCGACAATTTTTGTCGTAACGATTTTTATCATTGTATGTCTCGTTGGTTCGTGTATGTGGAGACAAATCAAAAG
-------TAATGA-------AGCTTCAACAAAAATG---GT-TGATACCTG-CGTGTTTACAGCATAAGCACAAACAAGT
TT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>chr3D_1076
--------------------------------------------------------------------------------
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----------------------------------CTTCTTGTCTCCTCATGCGACGCCCGCAAAGAGGTTAATCAC----
-TTTAATCTATTTAATTTGCAATGTCACCGTTG---ATATCAGGCGATTAAGC--ATTTCT-TTTTCTTCAGATTAGATA
TCTAATCTGTACTTTTTTTT-A-TC-GCTTGTTTCTTTACA-CCTGTATGCAGATGGATGAGCCTCGTGCTTTTCCCGGG
CCGTATGCGTGCTATTCCAAATACTTGCGAAACTGCACGAAGGAGCGGTGCAAGAAGTTATGCGCTGATGACAACATGCT
GCTGGTCCTCGAGGCCTTTTGCATCGACGTCAACAGCTGCTGCTGTCCCTATTAGTTATTAGTTAATTATTATAAGCGCA
GCTGAAGTGATCCAGGATGAAATGGAGATGCCAATAATATAAGCAAGAGATCAGACCTTT--TCTAATCTGTGTTAACCA
GCTTTTTCGGCAACCTTTGTAGTGT------------TTGTGTGTCTCGTTGGTTCGTGTACGTGGAGACAAATCAAAAG
-------TAATGA-------AGCTTGAACAAAAATG---GT-CGATACATG-GATGTTCACAGCATAAGCACAAACAAAT
TTT-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>chr3A_1134
--------------------------------------------------------------------------------
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--------------ATTTGCACTGTCGTGATTG---AGACCAGACGATGAAAC--A----A-TTTTTTTCAGATTGGATA
TCTAATCTATACATTTTTTT-AATC-GTTCGTTTCTTTACGCCCCGTATGCAGATGGATAAACCCCGTGCTTTTCCCCTG
CCGGCTTCGTGCTACTCCAAACACTTCCCAAACTGCACCGATGAACGGTGCAAGAAGTTCTGTGGCGGCAGCGACATGCC
GCCGGTCCCTGGGGCCTTCTGCAATGACGACAACAACTGTTGTTGTCTCATTTAGTTA----------ATTATAAACGCC
ATTGAAGTGATCCAAGAAGAAATGGAGATTCCAATAATATAAGCAAGAAATCAAACATTT--TTATATCTTTGTAAACCA
ACTTTTTCGGCAATTTTTGTAGTAACGA-TTTTATCATTGTGTGTCTCATTGGTTCATGTACGTGTAGACGAATCAAAAG
TAATGACTAATGA-------AGCCTGAACAAAAATA---GT-TGGTACCTG-CGTGTTGATAGCGTAAGCACGTCCAAGT
TTTTC---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------
>chr5B_1883
AGGA----------------------------------------------------------------------------
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--------------------------------------------------------------CTTTGTGGTTTCTACTAT
GGTCATCAATGATCACATTTCTAGGATGT--GACCAATCTTTAGGGGATCGATCCCGGGCCATGCTCCGCCCTTGAATCG
TAATAGGGAGAGCGACCATGGCCTAATGTATAGTGATTATTTCCGGTGCACGTCCCCACTCT-ACAATGCCAAGCTTTTC
TAGCGACGACGC-TTCTGGATGGCTAGACATGTGTTCAACCATATTCGGGTGGGAATGGTGGACTATGATGATTACTTTA
GATGCAAGAATGATGCCCTCGGAAGGGTTGGCTTATCCTCTTATCAGAAATGCACTGCATCTATCTGGATGCTTGCTTAC
AGAATTCTCGGTGATCTTGTGGATGAGTATGCTCGGATGAGTGAGTCCACATGCCTTCAATCGTTGTATAGGTTCT----
---------TCAAAGCCATGG-TTGCAATGTTTGGCCCGGAGTACTTGGGAGAACCAAATGCTGCAGATACAACCC-GGT
TGTTGGCCATCAATGAATCTAGAGGCTTTT-CCAGGAATGCT
>chr5D_1883
AGGA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------CTTTGTGGTTGCTACTAT
GGTCGTCAATGAGCACATTTCTAGGATGC--GGCCAATGTTTAGGGGATCA----------ATGCTCTGGCCTTGAATAG
TAATAGGGAGAGTGGCCATTGCCTACTATGTAGCGATTATTTCCAGTGCACGTCCCCACTCT-ACAATGCCAAGCTTTTC
---CAGCGACGC-TTCTGGATGGCTAGACATATGTTCAACTGTATTCGGGAGGGAGTGGTGGACTATGATGATTATTTTA
GATGCAAGAATGATGCCCTCGAAAGGGTTGGCTTCTCCTCTTATCTGAAATGAACTACAACTATCCAGATGCTTGCTTAC
GGAATTCCTGGTGATCTTGTGGATGAGTATGCCTAGATGAGTGAGTCCACATGCCTTGAATCATTGTATAGGTTCTTTGT
ATAGGTTCTGCAAAGCTGTGG-TTGCAGTGTTTGGCCCGGAGTACTTGAGAGAACTAAATATTGCAGATACAACCC-GGA
TGTTGGCGGTCAATGAATCCAGAGGCTTTT-TCAGGAATGCT
>chr2D_1883
AGGA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------CTTTGTGGTTGCTACTAT
GGT-GTCAATGAGCA-----CTAGGATGC--GGCCAATGTTTAGGGGGTCGATCCCAGGCCATGCTCCGGCCTTGAATCG
TAATAGGGAGAATGACCATTGCCTACTCTACAACGATTATTCCCAACGCAGATCCCCACTTT-TCAATGCCAAGCTTTTC
---CGACGACAC-TTTTGGATGGCTAGACATGTGTTCAACCATATACGGGAGGGAGTGGTGGAGTATGATGATAA-TTTA
TATGCAAGAGTGGTGCCCTAGGAAGGGTTGGCTTCTCCTGTTTTCATAAATGAACTGCAGCTATCTTAATGCTTGCATAT
GGAATTTCTGGTGATCTTGTGGACGAATATGCCCGGATGAGTGAGTTCACATGCCTTGAATCACTATATAGGTTCT----
---------GCAAAGCTGTGG-CAACAGTGTTTGGCCCGGAGTACTTGAGAGAACCAAATGCTGCAGATACAACCC-GGT
TGTTGGCGATCAATGAATCCAGAGGCTTTT-TG-GGAAT---
>chr1A_1883
AGGA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------TTTTGTGGTTGCTACTAT
GGTCGTCAATGAGCACATTTCTAGGATGC--AGCTAATGTTTAGGGGGTCGATCCCGGACCATGCTCCGGCGTTGAATCA
TAACAGAGAGAGCGATCATTGACTACTCTATAGCGATTATTTCCAGTGCACATCCCCACTCTTTCAATGCCAAGCTTTTC
---CGACGCCGC-TTTCGGATGGCGAGACATGTGTTCA----------GGAGAGAGTGGTGGAGTATGATTATTTTTTTG
GATGAGAGGATGATTCCCTTGGTAGGGTTGGCTTATCCTTTTATCAGAAATGTACTGCAACTATTCGGATGCTTGCATGC
AAATTTTTCGATGACCTTGTTGATGAGTATTTCCACATGAGTGAGTCCACATGCCTTGCATCATTGTACAAGTTAT----
---------ACAAAGCTATGA-TTGTAGTGTTTGGCCCGAAGTACTTGAGTGAACCAAATGATGCAGTTACAACCA-AGT
TGTTGGCGATCATCGAATCAAGAGGCTTTT-CG-GGAATGCT
>chr6D_1899
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-------------------------------------------------------------------------CTATTAT
GGTCGTCAATGAGCACATTTCTAGGATGC--GGCCAATATTTAGGTAGTCAATCCAAGGACATGCTCTGGCGTTGAATCG
TAATAGAGAGAGTGGCCATTGCCTACTTTATAGCTATTATTTTCAGTACACGTCTCCACTCT-ACAATGCCAAGCTTTTT
---CGATGATGC-TTCCGGATGGCTAGACATGTGTTCAACCATATTCGAGAGGGAGTGGTGAGGTATGATGATTACTTTA
GATGCAAGAATAATGCACTCGGAAGGGTTGGCTTCTTCTCTTATAA-AAATGCACTTCAGTTATCCGAATGATTGCATAC
GAAATTTGCGATGGTCTTGTGGATGAGTATGTCTGCATGAGTGAGTCCTCATGCCTTGTATCATTTGTATAGGTCT----
---------GCAAAGTCATGGTTTGCAGTGTTTGGCCCGGAGTACTTGAGAGAACCAAATGTTGTGGAAACAACCC-GGT
AGTTGGCGATCAATGAATCTATAGGCTTTTCTG-GGAATGCT
>SNPs
-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S--------S--S-S-----SS-SSS-SS--------------
------------S------S-------S----S-SS---------------S--S--SSS-S-S---------S--SS--
-----------S----------S--------S--S-------S--S------S-----S-------------S----S--
------SS-----S--------SS------------SS---------------------SSSSSSSSSSSSSSSSSSSSS
S----S------SS-----SSSSSSSSS------------------S-S--S-----------S-S--S--S--------
-----S-----------------------------------------SS---SSSS-----SS-----------------
-----SS-SSSSSSSSS---SS--------S------------------------S--S---------------S-----
----------S------S-----------------S----S----------------S----------------------
----------------------S---------------S---------S-------S---S-------------------
---S-----------------------------S----------------S-----------------------------
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-----------------------------------------------------------------------------SS-
--------S--S----------------------------------S---------------------------------
SS------------------------------------------------------------------------------
----------------------------------------S-----------------S---------------------
--------------------------------S----------------------------S----------------S-
--S--------------------S--S-----------------------------------------------------
---------------------------------------------S-S-------S------------------------
------S---------------------S---------------------------------------------------
---------S---S--------------------------------------S--S------------------------
--------------------------S-------S-----------S-------------S-S-----------------
---------------------------------------------------S----------------------S-----
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-S---------S-----S------------------------S----------------------------S--------
----------------------------S---------S--------SS----------SS-------S--S------S-
-----S----------------S-------------------------------------------------S-------
---------------------------------------------------------S-----------S----------
-------------------------------------------S------S-----------------------------
------------S-----------------------------------------------------S-----------S-
---------------------------------S----------S--------------------------S--------
--------------------------------S-----------------------------------------------
---------S--------------------------S-------S------------------------------S-S-S
----------------------SSS-----------------
>forward_959
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-----------------------------------------------------------ATAGCTAGGCAGGCACACAC-
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>reverse_2138
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---------------------------------------------------------AGCCATGCTCCGTCCTTGAA---
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