>input_sequence_81432
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------ATGGCAGCCACCCGCAA
GACCCGATCCCCGTCCGCCGCCGCCGCGGCCGGCGACCACCTCCGCTTCCTCCGCCCCGGCGCCCTCGCCCGTCTCCGCG
ACGCCAGGCTCCGCCGCCGCTCGAAGCCCGCCTACTCCCGCCCGGCCCCGGCCTCGCCGCAGCC------GTCCCCCTCT
CCCCCTCCCGCTCCCGCGCCCGCGGCGGGCGGGGACGGCGAGAGCGGGCCCTTCGTGCCCTACTTCGTGCCCGGGTCGAG
GCTCCTCGCCCCGCGGTTCCCGCAGCGGAAGAAGCTCACGGCGGGGAAGGTGGTGGCGCTCTTCTCGCCGCCGATGCCCA
GCCCGGACCTGCCATTCGAGGCGGTTATGGAGTTCTTCAACGCGCCGGATATGGTCGTCGCCGCCCACTAG---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------
>chr2D_1_TraesCS2D01G469000
TACATGGCACCTAGAAATAATTTCATAAATAACATTGCACAGACTGTTAGGGATTCACTCCACCCGATGACCACTAAAAG
GCTCCTATAAAAACAAAGCAAGATATCAGTTGGAGGCAAACAATTCGAGGAAAAAAAACCTAACCGTTCTTGTACTTAAT
GTCTTAGTTTACAACATATTTGTACATCTCACAAAAGAAAAATATTCATAGGGATCCCTAAAAAATGCACAAAAACAAAA
ATGATTAGTCAAATACTTCCTCCGTTCACAAATATAAGCGTGTCTAACTTTTTTGTGAATTGGATGGATATTGACACGAT
TTAGTGTGTTTGTCCACTAATTTCAGTTCTAATGTAGTTCATATTAAAATATATGTCCAAAATATCTTATATTTGTGAAC
GGAGGGTACTGTATAG---AGTAGACAAAAATAGGGCAAGAAACAAAAACACCAATATTCCATCGCAATGTCAAACAAAT
ATTACTTCTGACTGATTCGGGAAAAAAAT---AAAATATTTTTT-AGGCAAAAATAATATTACTAATGCAGGTGGCCCAA
TTTTAGAAACCCACACGTTTTTTTTTTTGAAATTAGAAACCCACACGTTGATTACGGGCA---AAGGCCACCCATTGCCG
TGGCCCGTGGGCGAGATGACAGCGCG----CATCGTCCACGCCACGCGCCACC-------CGCCACCGGCCGCCGTCCCG
TTTCAAAACGTCGTCAACCGCACCACGCAACCGCTCGCCCGCTCGGTAAGAACGCGCAAACCGTCCCACCGCCACGCGGG
CCCCACCACCTACGGCCCCACACGTCATACTCCCACGGAGCGCCATCACCGATTTGGAAGTGAACATACGAATTTCCCCC
AAAAGCTTTTCCCTCCCAAGGCTCGCGCCTCCCGCCCAACCCTACCCC-ACCCCCCTTCAAATACCGCCGCTCTCTCCTC
CTTCCACAGCATCCCACCCATCCCATTGGCCCAATCCACC-CCCACCGTCACCCGGACCCCACATGGCAGCCACCCGCAA
GACCCGATCCCCGTCCGCCGCCGCCGCGGCCGGCGACCACCTCCGCTTCCTCCGCCCCGGCGCCCTCGCCCGTCTCCGCG
ACGCCAGGCTCCGCCGCCGCTCGAAGCCCGCCTACTCCCGCCCGGCCCCGGCCTCGCCGCAGCC------GTCCCCCTCT
CCCCCTCCCGCTCCCGCGCCCGCGGCGGGCGGGGACGGCGAGAGCGGGCCCTTCGTGCCCTACTTCGTGCCCGGGTCGAG
GCTCCTCGCCCCGCGGTTCCCGCAGCGGAAGAAGCTCACGGCGGGGAAGGTGGTGGCGCTCTTCTCGCCGCCGATGCCCA
GCCCGGACCTGCCATTCGAGGCGGTTATGGAGTTCTTCAACGCGCCGGATATGGTCGTCGCCGCCCACTAGATGGGACCC
GTCGTGTTG---TATTAGTCGCGGTATACTTGTAGATTCAGGGATCTAGCCCCTCCCTTGTTTGATTTAGTTCGATGTCT
TACAGTTTATCCTTTACCTTGTTTGTCTGTACCAAATCGATGTGAAAAACAAATACTA---TAAAGAATAGTTCTGCAGA
GTTTTGTGTAACTGCAAAAATGGGGAAGAGAAGTGCAAATTTGTTATGCTTTCCTTCTACGATCTATTGGGTGATCTGTG
AATTCATTCAGGATATTTTGTTCTGGGCTTGCTTATAGGCACATACACGCAGTACTAGGGGAATTCAATTTCTTGTCAGA
TGTGTATCTAGTTATCAATGGACATCATCAGCATCTGGTTATCCTTTTATAAATGGTATGTATTTTCTCAACTCTAGTTC
AATTTTGTTGATTCAGATTACTTGAATCTTGCAGTTAGCAGTTCACGCCGACAGTATTATTGGTTAAGAAAGACTAGTTC
AATTTGGTTGATGTAGAT-ACATGCTGTTTGTA----------GTTCAACTTGGTTGCTTTAGATTATATGAATCTTGTT
---AGTGGTTCAACTTGGTTGATGTTGATTACATGAATCTTGCCGTTAGCAGTTCAACTCTTGTTTAACTTGGTTGATTC
TGATTACACGAACCTTGCCGTTAGCAGTTCAACTCTAGTTCAAGTTGGGTGATGTTCATTACATGAATCTTACCGTTAGC
AGTTCAATTCTTGTTCAACTGGGTTGATTTTGATGACATGAATCTTGCTGTTAGCAGTTCATGCCATTTCTGCAATACAG
TTAGGTTGCTTATGGTAAATTTTGACCTATTGATGCTTATGGTATTTTTTGACAGTTCATGCCGACAGTATTTGTTAAGA
AACACTATACTTCCCTCCCTAAAGAAATATAAGAGCGTTTAGATAGTGATCTAAACGCTCTTATATTTCTTTCCGGAGGG
AGTACATCTTAGGTTTCTTATGTTGTTGGACATTGCCATCTTCTGGTATTG
>chr2B_196
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------AGAAAAATATTCACAAAGATCCCTAAAAAATGCACGAA---AAAA
ATGATTAGTTAAATACTTCATCCGTACACAATTATAAGCGCGTCTAACTTTTTGTT-AATTGGATGGATACTAACTCGAT
TTAGTGTGTTTGTTCACTTATATAGTCA------------ATATTAAAATATATATTCAAAATATCTTATATTTGTGAAC
GGAGAAAACTGTATAAAGTAGTAGACAAAAATAGGCCAAGAAACAAAAACACCAATATTCCACCGCAATGTCAAACGAAT
ATTAGTACTT-CTGATTCTAAAAAAAAGAGTGAATATATTTTTTGAGGCAAAAATAATATTACTAATGCAGGTGGCCCAA
TTTTAGAAACCCACACGA------------------------------TGATTACGGCCACCCAAAGCCACCCTTTGCCG
TAACCACA-----CGATGACAGCGCCCGCCCATCGTTCACGCCACGCGCCAAC-------CGCCACCGGCCGCCGTCCCG
TTTCAAAACGTCGTCAACCTCACCACGCAACCGCTCCCCCTGGGTAA---AACGCGCAAACCGTCCGACCGCCACGCAGG
ACCCACCACGCACGGCCCCACACGTGATAAGCCCACGGACCGCCATTACCGATTTGGAAGTAAACATACGAATTTCCCCC
GAAAACTTTTCCCTCCCACGGGTCGCGCCTCCCGCCCAACCCTACCCCAACCCCCCTTCAAATACCGCCGCTCTCTCCTC
CTTCCACAGCATCCCACCCTTCCCATTGGCCCAATCCGCCTCCCACCGTCACCCGGACCCCACATGGCAGCCACGCGCAA
GCCCCGATCCCCGTCCGCCGCCGCCGCGGCCGGCGACCACCTCCGCTTCCTCCGCCCCGGCGCCCTCGCCCGCCTCCGCG
ACGCCAGGCTCCGCCGCCGCTCGAAGCCGGCCTACTCCCGCCCGGCCCCGGCCTCGCCGCAGCC------GTCCCCCTCC
CCCCCTCCCGCTCCCGCGCCCGCGGCGGGCGGGGACGGCGAGAGCGGGCCCTTCGTGCCCTACTTCGTGCCCGGGTCCAG
ATTCCTCGCGCCGCGCTGCCCGCAGCGGAAGAAGCTCACGGCGGGGAAGGTGGTGGCGCTCTTCTCGCCGCCGATGCCCA
GCCCCGACCTGCCATTCGAGGCGGTTATGGAGTTCTTCAACGTGCCGGATATGGTCGTCGCCGCCCACTAGATGGGACCC
GTCGTGTTGTATTATTAGTCGTGGTATACTTGTAGATGCATGGATCCAGTCCCCTCCCTGTCAATCTAGCTTC-ATGTCT
TACAGTTTATTGTTTACCTTGTTTGTCTGTACCAAATCGATGTGAAAAACAAATACTACTATAAAGAATAGTTCTGCAGA
ATTTTGTGTAACTGCAAAAATGGGGAAGAGAAGTGCCAATTTGTTATGCTTTCCTTCTACGATCTATTGGGTGATCTGTG
AATTCATTCGGGATATTTTGTTCTGGGCTCTCTAGTAGGCACATACATGCAGTACTAGGGGAATTCAGTTGCTTGTCAGA
TGTGTATCTAGTGATGAATGGACATCATCAATATCTGGTTAACCTTTTAGAAATGGTATGTATTTTTTCAACTCTAATTC
AATTTTGTTGATTCAGATTACTTGAATCTTGCAGTTAGCAGTTCATGCCGACAGTATTATTGGTTAAGAAAGACTAGTTC
AACTTGGTTGATGTAGATTACATACTGTCAGCATTTAACTCTTGTTAAACTTGCTTGTTTTATATTACATGAATCTTGCC
GTTAGCAGTTCAACTCGGTTGATTTAGATTACATGAATCTTGCCGTT---------------------------------
----------------------AGCAGTTCAACTCTAGTTCAAGTGGGTTGATGTTGATTACATGAATCTTGCTGTAAGC
AGTTTAACTCTTGTTCAACCTTG-TGATTTTGATTACATAAATCTTTCTGTTAGCAGTTAATGCCGTTTCTGCAATACAG
TTAGGTTGCTTATGGTAATTTTTGACCTATTGATGCTCATGATAATTTTTGACAGTTCATGCCAACAGTATTTGTTAAGA
AACACTATACATC-------------------------------------------------------------------
---------------------------------------------------
>chr2A_523
AAAAAAAAAC----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------TTACTAGTGCAGGTGGCCCAA
TTTTAGAAACCCACACGA------------------------------TGATTACGGCCACCCAAAGCCACCCTTTGCCG
TA-------GGCGCGATGACAGCGCCCGCCCATCGTCCACGCCACGCGCCCCGCGCCCCGCGCCACCGGCCGCCGTCCCG
TTTCAAAACGTCGTCAACCGCACCACGCAACCGCTCCCCCTGTTGGTAAGAACGCGCAGACCGTCCCACCGCCACGCGGG
ACCCACGACGCGCGGCCCCACACGTCATACGCCCACGGACCGCCATCACCGATTTGGAAGTGAACATACGAATTTCCCCC
GAAAACATTTCCCTCCCACGGGTCGCGCCTCCCGCCCAACCCTACCGCAACCCCCCTTCAAATACCGCCGCTCTCTCCTC
CTTCCACAGCATCCCACCCGTCCCATTGGCCCAGTCCGCCCCCCGCCGTCACCCGGACCCCACATGGCAGCCACGCGCAA
GCCCCGATCCCCGTCCGCCGCCGCCGCGGCCGGCGACCACCTCCGCTTCCTCCGCCCCGGCGCCCTCGCCCGCCTCCGCG
ACGCCAGGCTCCGCCGCCGCTCCAAGCCCGCCTACTCCCGCCCGGCCCCGGCCTCGCCGCAGCCACAGCCGTCCCCCTCT
CCCCCTCCC------GCGCCCGCGGCGGGCGGGGACGGCGAGAGCGGGCCCTTCGTGCCCTACGTCGTGCCCGGGTCCAG
ATTCCTCGCGCCGCGCTGCCCGCAGCGGAAGAAGCTCACGGCGGGGAAGGTGGTGCCGCTCTTCTCGCCGCCGATGCCCA
GCCCGGACCTGCCATTCGAGGCGGTTATGGAGTTCTTCAACGCGCCGGATATGGTCGTCGCCGCCCACTAGATGGGACCC
GTCGTCTTGTATTA---GTCGTGGTATACTTGTAGATGCAGGGATCTAGTCCCCTCCTTGTCAATCTAGCTTC-ATGTCT
TACAGTTTATCGTTTACCTTGTTTGTCTGTACCAAATCGATGTGAAAAACAAATACTA---TAAACAATAGTTCTGCAGA
GTTTTGTGTAACTGCAAAAATGTG---GAGAAGTGCCAATTTGTCATGCTTTCCTTCTACGATC----------------
-----ATTCAGGATACTTTGTTCTGTGCTTGCTTATAGGCACATACATGCGGTGCTAGGGGAATCCAATTTCTTGTCAGA
TGTGTATCTAGTTATCAATGGACATCATCAGCATCTGGTTATCCTTTTAGAAATGGTATGTATTTTCTCAACTCTAGTTC
AATTTTGTTGATTCAGATTACTTGAATCTTGCAGTTGTCAGTTCATGCAGACAG---TATTGGTTAAGAAAGACTAGTTC
AACTTGGTTGATGTAGATTACATGCTGTTAGTA----------GTTCAACTTGGTTGATTTAGATTATATGAATCTTGTT
GTTAGTGGTTCAACTTGGTTGATGTTGATTACATGAATCTTGCCGTTAGCAGTTCAACTCTTGTTCAACTTGGTTGATTC
TGATTACACAAACCTTGCTGTTAGCAGTTCAACTCTAGTTCAAGTTGGGTGATGTTGATTACATGAATCTTACTGTTAGC
AGTTCAATTCTTGTTCAACTGGGTTGATTTTGATGACATGAATATTGCCGTTAGCAGTTCATGCCATTTCTGCAATACAG
TTAGGTTGCTTATGGTAAATTTTGACCTATTGATGCTTATGGTAATTTTTGACAGTTCATGCCGACAGTATTTGTTAAGA
AACACTATACATC-------------------------------------------------------------------
---------------------------------------------------
>SNPs
S-S-SSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S-SS------------------S--SSS----
---------S---------S-----S-----S--------S------------SS-S-------------S-S--S----
-------------S----S--S-SSSSSSSSSSSSSSSSS--------------S-S-----------------------
----SSS--------S-------------------S--------------------------S-------------S---
----S-S--SS-------SSS------SS-----S---------------------------------------------
-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S-------S-------S------
-SS--SSSS----S-----------S------------------------------------------------------
------------------------------------S---SS-S------------------------------------
S--------SS-------------------S--------S----------------------------------------
S---S-------------S--S----------------------------------------------------------
-------------------S-----------------S------------------------------------S-----
-S----------------------------------------------------------------------S-------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------S--
SS-------S-----S-S--------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------S---------------S-----------S---SS------SSSSS-SSS---S------
-----------S--------------------------------------------------------------------
------------------------------------S-------------------------------------------
-----------------------------------------------S--------------------------------
-------------------------------------------------S------------------------------
---------------------------------------------S----------------------------------
--S--------------------------S---------------------------S----------------------
-----------------------------------------------------------------S--------------
---------S--------S-------------------------------------S----------------S------
--------------------------------------------------------------------------------
--------------------------------------------S-----------------------------------
----------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_76
--------------------------------------------------------ACTCCACCCGATGACCACTA----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------
>reverse_1728
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------CGCAGTACTAGGGGAATTCAA------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------
