>input_sequence_81431
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--------------ATGTCGCTGAGCGAGAAGCTGGAAGCGGCGCGTATCGCCCTGGGCAAGCGCAAGGAGCGGGAGCTG
CAGCAGCTGGGCCCCGCCCCGGCCCCGGCCCTAGCCCCAGCGCCTGCCGCTGCGA------------CTAAAGCCGAGCT
GTCCAAGCCGGCTCGGGCCGGCAACAACAACAAGCTGCTAGCCGGGAACCTGGCCCACGAGTTCCTGACCCACGGCACGC
TCCTGGGCCGCCGGATCGAGCCGAGCCATCACCACCAACCCGCTGCCGCGGCCGCCTCCCCGCGGCCCGAGCCCGAGCCG
AAGAGGAGGTACGCGGAGCTGTCCTGGCTGCTCATGACGAACGGGGCCCACATCCCCGGCGTCGTCAACCCCACGCAGCT
CGGCCGCTGGCTCCAGATAAAGGAGTGA----------------------------------------------------
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>chr2D_1_TraesCS2D01G381500
TAAGTCAAGCACGGGTTTTAGGTCTTCGAGTTGACTAACAAAAAATGTGTTATTTGTCATATAAAATGTACTTGTGGCAT
GTTATATATATTTCACTAGTTAAACTGACTATCTAAGTTCCTGTGACATACTTATATTCCCATCCGGAGAGATTATTCAT
CATGTGAGGACACACCGGATACCTGAGAAACAAAAATAAGTTCGTAGATTTATCAGCAAAGGAAAATGGAAGCAACATAG
GAGTGTCCTGATTTTTATTTAGTTTTTCTA--CAATTAGGAGGTCATTGATTATATGCCTATCCGGGCCCAAACACCAGG
CGCCAGAGAGACTAAAAAAACGTACACCCCAAAACTCGCGCGAAGCTGCCACTGGCGGGTGGACCTACGATTGGACCCAG
CTGCAAAATCCTTTGCCCGGACACGCTCCCTGGAATTCCCCATCCA-CCCCCTCCCCCTCGCCACACGACTGCGCAAACA
CACATCCCACCACCGCACGCAATTACCCATCTGCCCTTCCCGTCTCCCCACAACCACGAGCACGCCCCTCGGCTGCGGTC
CCTCTGCGCGAAAGCGCGGTGGCACGGGCGTAATTCCCTCCGAGGCCCGGGGGCCCTCTCTGGTGCGCTCCAGTATAAAT
AGGAGGCAAGCCCCCTCCTGACGCCCCCCCG-------------------------------------------------
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-------------------------------------------------------------------------TCTCTTA
TAAGCC---AGAATTTTCTCTCGCCTCTCCATCCCTCCACTGG---CCTCCCCTCTCTCCTCCGATCTTTTTCTCTCGTC
CCGGCCCGTTGTTCCCTCCCCTCCTCTCGTTCGGCCTCTCTGCCCTGCGAAGTTACCATCCTGCCCTTGGTGGGCCCCAC
GGCCATCAATCTCCTGGAGATTTTTTTTTCCTCCTCCCAATTGTTTTTATTTGTTTCTTTTCTTTGCCTCCTCCACATAC
ATACATATCCCAT---CACCAGAAACCGCTTTCCTCTCCATCGACGGCTCCCCTCGGCTGGTGCTGCTGACGTGGCGAGG
TCCCGGCCGTCGATATGTCGCTGAGCGAGAAGCTGGAAGCGGCGCGTATCGCCCTGGGCAAGCGCAAGGAGCGGGAGCTG
CAGCAGCTGGGCCCCGCCCCGGCCCCGGCCCTAGCCCCAGCGCCTGCCGCTGCGA------------CTAAAGCCGAGCT
GTCCAAGCCGGCTCGGGCCGGCAACAACAACAAGCTGCTAGCCGGGAACCTGGCCCACGAGTTCCTGACCCACGGCACGC
TCCTGGGCCGCCGGATCGAGCCGAGCCATCACCACCAACCCGCTGCCGCGGCCGCCTCCCCGCGGCCCGAGCCCGAGCCG
AAGAGGAGGTACGCGGAGCTGTCCTGGCTGCTCATGACGAACGGGGCCCACATCCCCGGCGTCGTCAACCCCACGCAGCT
CGGCCGCTGGCTCCAGATAAAGGAGTGACGCCGGCGGCC-GCCGCCCCCATCGGCGCCCAGAAGAACCACCACCACCAGG
A------GGAGGAGGAAGGGCCGCAGCACATCAAGACAAAGCGGTTTCGTCGTTCGCCTCGCCTCTCCCATCCCCTCCCC
TTGTCTTCTTTCTTAGATCTAGCGAGAAAACTTGTTGCTGTTGCTGTTGTACTTAGCGCTATCCGTTCGATGCATTGGCA
CTGCTAGTCTTTAATTTCTTCTACCGTA------------------TCATTCATGCGTGTTCGCTTCTTCTTTTTTCCTG
TCTGCGCCGCGCTCGACTCGATAGCAAAAGCCGAT---CGATGGATGGATGGATCGATCGTGGCGGAAATGTTGCCATGT
ATGGCGACGCAACGAGCATGGCGTGCGCTGGTGGAGATGGCTCGGTACTCGGTAGTTGGTCCCCGTTTTTATTTCCGTCT
CCGTGTCTGGGTGGGCATGGGCGCATTCGGTTTGGTTTGGTTTGG-----GTGAGCGCCCCGGCTCGGAGCTCTGCTCCG
TAATAAATACAGGCAAGCTGGCGCCCACCGCGTGCCAGGTGAAGGATCAAAGAACCGGGCGCGTGGTAGATATGTCATCT
CATCTGTGTATGTTTCGTAGTAGTAGTATACAGTA-------AGTAGAACGTGGTG------CCGATTGATTATACAGAG
AGGCTTTGGTTGTGACCTTTACATGAAGATGATGCGTATATCCTTGTGATTTTGAGGCCATTTAGATTTTGTTTATTGGA
TCAAGGGACGAAAGCGGTCTGGTCTGGTCTGGTCTGGACCCATCGTGTTTCCAGACGAAAGCTTTGATTAGTTTTTTGTA
GGGAAGCTTTGATGAGTTGGTCCTTGTTGCTTCCATTGATCGATGATAGGTATTTTGGCTCTTGCGCGCCTACCTGGTCC
GTTACGACCTGTCTTGATTTGCATTTAAATACACGGGGATCGCTGCTGATTTGGTCGATCCTGCTTTCCATCCATCGTCC
ACCGTATCGGTGCTGGTCAATGGTGGGAGGGAGG
>chr2B_15
--------------GTTTTACGTCTTCGATTTGATTAGCAAAAAATGTGTTATTTGTCATATAAAATATACTTGTGGCAT
GTTATATATATTTCAACTGTTAAACTGACGACCTAAGTTCCTGTGCCATACTTATATTCCCATCCGGAGAGATTATTCAT
CATGCAAGGACACACCGGATACTTGAGAAACCAAAAGAAGTTTGTAGATTTATCAGCAAAGGAAAATGGAAGCAACATAG
GAGTGTCTTGATTTTATTAAA--TTTTCTA--CAATTAGGAGTGTCTTGATTATATGCCTATCCGGGCCCAAACACCAGG
CGGCCGAGACACTAAAAAAACGTACACCCCAAAACTTCCACGCAGCTGCCACTGGCAGGTGGACCTACGAATCGACCCAG
CTGCAAAATCCTTTGCCTGGACACGCTCCCTGGAATTCCCCATCCA-CCCC-GTCCCCTCGCCACACGACTGCGCGAACA
CACATCCCACCACCGCACGTAATTACCCATCCACCCTTCCCGTCTCCCCACAACCACGAGCACGCCCCTCGGCTGAGGTC
CCTCTGCACGAAAGCGCGGTGGCACGGGCGTAATTCCCTCCGAAGCCCGGGGGCCTTCTCTGGCGCGCTCTAGTATAAAT
AGGAGGCAACCCCCCTCCTGACGCCCCCCCG-------------------------------------------------
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-------------------------------------------------------------------------TCTCTTA
TAAGCCAGAAGAATTTTCTCTCGCCTCCTCCCCCTCCTCCAGTGCTCTCCCCGTCTCTCCTCCGATCTTTCTCT--CGTC
TCGTCCCGTTGTTTCCTCCCCTCCTCTCGTTCGGCCC--CTGCGCTGTGAAGTTACCGTCCTGCCCCCGGTGGGCCCCAC
GGCCATCAACCTCCTGAAGATTTTTTTC-CCTCCCAATAATTGTTTTTATTTCTTTCTTTT-TTTGCATCCTCCACATAC
ATACATATCCCAT---CA---GAAACCGCTTTCCTCCCCATCGACGGCTCCTCTTGGCTGGCGCTGCTGACGTGGCGAGG
TCCCAGCCGTTGATATGTCGCTGAGCGAGAAGCTGGAAGCGGCGCGTATCGCACTGGGCAAGCGCAAGGAGCGGGAGCTG
CAGCAGCTGGGCCCCGCCCCGGCCCCGGCCCCGGCCCCAGCCCCAGCCCTAGCCCCAGAGCCTGCAGCTAAAGCCGAGCT
GTCCAAGCCGGCTCGGGCCGGCAACAG---CAAGCTGCTAGCCGGGAATCTGGCCCACGAGTTCCTGACCCACGGCACGC
TCCTGGGCCGCCGGATCGAGCCGAGCCATCACCACCAACCCGCTGCCGCGGCCGCCTCCCCGCGGCCCGAGCCCGAGCCG
AAGAGGAGGTACGCGGAGCTGTCCTGGCTGCTGATGACGAACGGGGCCCACATCCCCGGCGTCGTCAACCCCACGCAGCT
CGGCCGCTGGCTCCAGATAAAGGAGTGACGCCGCCGCCC-GCCGCCCCCATCGGCGCCCAGAAGAACCACCACCA---GG
A------GGAGGAGGAAGGGCAGCAGCACATCAAGACAAAGCGGTTTCGTCGTTCGCCTCGCCTCTCCCATCCCCTCCCC
TTGTCTTCTTTCCTAGATCTAGCGAGAAAACTTATTGCTGTTGCTGTTGTACTTAGCGCTATCCGTTCGATGCATTGGCA
CTGCTAGTCTTTAATTTCTTCTCCCGTA------------------TCATTCATGCGTGTTCGCTTCTTCTTTTTTATTG
TCTGCGCCGCGCTCGACTCGATAGCAAAAGCCGAT---CGAT-GATGGATGGATCGATCGTGGCGGAAATGTTGCCATGT
ATGGCGACGCAACGAGCATGGCGTGCGCTG----------CTCGGTT-------GTTGGTCCCCGTTTTTATTTCCGTCT
CCGTGTCTGGGTGGGCATGGGCGCATTCGGTTTGGTTTGGTTTGG-----GTGAGCGCCCCGGTCCGGAGCTCTGCTCCG
TAATAAATACAGGCAAGCTGGCGCCCACCGCGTGCCAGGTGAAGGATCAAAGAACCGGGCGCGTGGTAGATATGTCATCC
CATCTGTGTATGTTTCGTAGTAGTCGTATACTAGTAGTATACAGTAGTACGTGGTG------CCGATTGATTATTCAGAG
AGGCATTGGTTGTGACCTTTACATGA-GATGATGCGTATATCCTTGTGGTTTTGAAGCCATTTAGATTTTGTTTATTGGA
TCAAGGGACGAAGGTGGTCTGGTCTGGACCCAC---------TCGTGTTTCCAGACGAAAGCTTTGATTAGTTTTTTGTA
GGGAAGCTTTGATGAGTTGGTCCTTGTTGTTTCCATTGATCGATGACAAGTATTTTGGCCCTTGCGCGCCTACCTGGTCC
GTTACGACCTGTCTTGATTTCCATTTAAATACACGGGGATCGCTGCTGATTTGGTCGATCTTGATTTCCATCCATCGTCC
ACCGTATCGGTGCTGGTCAATGGTGGGAGAGAGG
>chr2A_152
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-----------------------------------------------------------------------ATAATTCAT
CATGTGAGGACACAACAGATACATGAGAAACCAAAATAAGTTTGTAGATTTATCAGCAAAGGAAAATGGAAGCAACATAG
GAGTGTCTTGATTTTTATTTAGTTTTTCTATACAATTAGGAGGTCATTGATTATATGCCTATCCGGGACCAAACACCAGG
CGCCCGGGACACTAAAAAAACGTACACCCCAAAACTCCCACGTAGCTGCCACTGGCGGGTGGACCTACGATTGGACCCAG
CTGCAAAATCCTTTGCCCGGACACGCTCCCTGGAATTCCCATTCCACCCCC-TCCCCCTCGCCACACGACTGCGCAAACA
CACATCC-------------AATTACCCATCTGCCCTTCCCGTCTCCCCACAACCACGAGCACGCCACTCGGCTGCGGTC
CCTCTGCACGAGAGCGCGGTGGCAGGGACGTAATTCCCTCCGAGGCCCGGGGGCCCTCTCTGGCGCGCTCCAGTATAAAT
AGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTTA
TAAGCCAGAAGAATTTTCTCTCGCCTCCTCCCCCTC------TGCTCCCCCCGTCTCTCCTCCGATCTTTCTCT--CGTC
-----CCGTTGTTCCCTCCCCTCCTCTCGTTCGGCCT--CTGCCCTGTGAAGTTACCGTCCTGCCCCCGGTGGGCCCCAC
GGCCATCAATCTCCTGGAGATTTTTTTT-CCTCCTCCCGATTGTTTTTATTTCTTTCTTTTCTTTGCCTCTTCCGCATAC
ATACATATCCCATCACCA---GAAACCGCTTTCCTCTCCATCGACGGCTCCCCTCGGCTGGTGCTGCTGACGTGGCGGGG
TCGCGGCCGTCGATATGTCGCTGAGCGAGAAGCTGGAAGCGGCGCGTATCGCACTGGGCAAGCGCAAGGAGCGGGAGCTG
CAGCAGCTGGGCCCCGCCCCGGCCCCGGCCCT---------------------------------------AGCCCAGCT
GTCCAAGCCGGCTCGGGCCGGCAACAACAACAAGCTGCTAGCCGGTAACCTGGCCCACGAGTTCCTGACCCACGGCACGC
TCCTGGGCCGCCGGATCGAGCCGAGCCACCACCACCAACCCGCTGCCGCGGCCGCCTCCCCGCGGCCCGAGCCCGAGCCG
AAGAGGAGGTACGCGGAGCTGTCCTGGCTGCTCATGACGAACGGGGCCCACATCCCCGGCGTCGTCAACCCCACGCAGCT
CGGCCGCTGGCTCCAGATAAAGGAGTGACGCCCGCCGCCGGCCGCCCCCATCGGCGCCCACAAGAACCACCACCA---GG
AGAACGAGGAGGAGGAAGGGCAGCAGCACATCAAGACAAAGCGGTTTCGTCGTTCGCCTCGCCTCTCCCACCCCCTCCCC
TTGTCTTGTTTCCTAGATCTAGCGAGAAAACTTGTTGCTGTTGCTGTTGTACTTAGCGCTATCCGTTCGATGCATTGGCA
CTGCTAGTCTTTAATTTCTTCTACTATTACCGTGTTTGCGTATCATTCATTCATGCGTGTTCGCCTTTA--TTTTCCCTG
TCTGCGCCGCGCTCGTCGCGATAGCAAACTGCAAAAGCCGACGGATGGATGGATCGATCGTGGCGGAAATGTTGC-----
----------AACGAGCATGGCGTGCGCTGGTGGAGATGGCTCGGTA-------GTTGGTCCCCGTTTTTATTTCCGTCT
CCGTGTCTGGGTGGGCATGGCCGCATTCGGTTTGGTTTGGTTTGGTTTGGGTGAGCGCCCCGGCTCGGGGCTCTGCTCCG
TAATAAATACAGGCAAGCTGGCGCCCACCGCGTGCGAGGTGAAGGATCAAAGAACCGGGCGCGTGGTAGATATGTCATCT
TATCTGTGTATGTTTCGTAGC--------ACTACTAGTATACAGTAGTATACTTAGTGCCGACCGATTGATTATCCTAGA
T---------------------------------------------------------------GATTTTGTTTATTGGA
TCAAGGGACGAAGGGGGTCTGGTCCGGTCTGGTCTGGACCCGTCGTGTTTCCAGACGAAAGCTTTGATTAGTTTTTTGTA
GGGAAGCTTTGATGAGTTGGTCCTTGTTGTTTCCACTGATCGATGAAAGGTATTTTGGCTCTTGCGCGCCTACCTGGTCC
GTTACGACCTGTCTTTATTTGCATTTAAATACACGGGGATCGCTGCTGATTTGGTCGATCTTGATTTCCATCCATCGTCC
ACCGTATCGGTGCTGGTGAATGGTGGGAGGGAGG
>SNPs
SSSSSSSSSSSSSS------S--------S----S--S-----------------------------S------------
---------------SSS-----------S-S-------------S----------------------------------
----------------------S--------S----------S-------------------------------------
-------S------------------------------------------------------------------------
----S----S---------------------------S-S--S-------------------------------------
---------------------------------------------------S----------------------------
-------------------S------------------------------------------------------------
-------S-------------------------------------------------------S----------------
---------S----------------------------------------------------------------------
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---------------------------SS-SS--SS-SS-S-S-----S---S-----------------S---SS----
S--S---------------------------------SS--------S---------S--------SS------------
----------------------------S-----------------------S---------------------------
------------------SSS-----------------------------------------------------------
----------------------------------------------------S---------------------------
--------------------------------S--------S--S---SSS--SS-------------------------
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---------------------------------------------------------------------------SSS--
---------------------S----------------------------------------------------------
------------S-------------------------------------------------------------------
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-----------------------------------------------SSSSSSS--------------------------
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------------------------S------SSSS------------S--------------------------S-----
----S---------------------S---------------------S------S------------------------
------------S-S--------------------------S--------------------------------------
-----------------------------S----------------S---------------------------------
------------------------------------------------------------S--S----------------
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>forward_183
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---GTGAGGACACACCGGATACC---------------------------------------------------------
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>reverse_1334
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-----------------------------------------------------GACTAAAGCCGAGCTGTCCA-------
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>forward_1027
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-----------------------------------------------CGAAGTTACCATCCTGCCCT-------------
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>reverse_2275
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----------------------------------AAGTAGAACGTGGTGCCGAT--------------------------
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