>input_sequence_81430
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-----------------------------------------ATGGTACAGGCGTCTGCGGATGATGCTCATTCTCCTCTA
TGTGCAGAAGCTTTGGCGATTAGGCTAGCAGCTGCGGTGGCGGCCTCTCTTCACCTTAATCAGGTTTCTTTCCTCACCGA
CAATCTTTCCTTGGCAAAGATGGCGGCGTCCAGAAATATAAATGATGTCTTGATCATGTGGAGATATCGCAGCCCTCTCA
GCAAGTTTATCCAGGACACATCCTTCGTAAATGCTGTTGTTTATCACATCCCCAGG------------------------
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-----------------------------------------------------------AACATCAATGGGGTAGCTCAT
GATTGTGCTCATCAGGTTCTCAACTCAAGAGTAGAATATTTCTTCAGTTGTACTCATTCCTCTCAAG-CAATGGTTCTTA
CCCTCTTTTACTTTCTCTTCAAAATCTTCAGGTGGAAGGGAATGTAA---------------------------------
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>chr2D_1_TraesCS2D01G265300
CTTTGTTAATTTTGTGACTTTTTTTAAACCTGTGAACTTTTATCAAAATTAAGAACTATCTTAAAATTTTAAATTCTTCA
ATTTTTTTAATGTTTTCCGATTACTGAACCTTTTTTCATAATTTTTCACTTTTTAAAAAAATTTATGATTTTTTAATTTT
TCGATGGTGAATGGTCAACGGGTATTATGATCTTTTTTCAAAATTGCCTGGTTCTTCAAATTCATGATTTTTTTGATTGC
ATGGATTATGCCAGTAGTGAGAATAGTGAACGAAAAAAAACCCGAAGCTGGCGAGCGAGCGAGAGTGCGGACAGGGAATT
GGGACACAGCCCACGAACTAGCCTAGCAAGCGTCGGTGAAGCACCGAACATGACTTGTCTTAAAGAAAGCCAAAGTTGCT
TCTCCATGTGGGACATTCATCAAGTGTGTTGGGCCTCGTGCTGACCACATAGACCACCGAGGAGGATAATGTGGACCACG
TTCTACTATAGTGCGCGTATGCGAGGTAGTCGTGGTACCTAGTCCTTAGCCACTTTCGTCTGACCGTCGTGGGAGAAGTA
ATCTTTTCCTTGCTTTTTAATCCAGTAATAACTAACTCTTGTGTATACCAAATTTCTTTTTCCATGTGAAGTTGGTGGAG
CACCCGCCTTTCACATGAAGAAACAATGTTTACTCATCGTTTTAGTGGGAATAACTCACTCGGTATTGATCTTCGGTATA
AGTGTTGCCGTTGTTGCAATAAAATCCCATTTCTAAGTAAGGACCCCAACTCATCTCCATCCTCTGCCCAACAAGTTGCA
GCACCATCAAGCTCTCAAACCCAAGGTGCAGAACAAATTTTGCAGGGATCCACAATCAGATCTGATTTACTCATTGCAGG
AACTAAAGTCTATTCTGATGCTGCTTGGCGCAAGAAAAATATCCCTGGCAGGGGATCGAA-GGTGCCACTGGGATTGGTG
TTTTTGTCCATGTCACTGATCAAGGAATTGATAAGAAAATCATGGTACAGGCGTCTGCGGATGATGCTCATTCTCCTCTA
TGTGCAGAAGCTTTGGCGATTAGGCTAGCAGCTGCGGTGGCGGCCTCTCTTCACCTTAATCAGGTTTCTTTCCTCACCGA
CAATCTTTCCTTGGCAAAGATGGCGGCGTCCAGAAATATAAATGATGTCTTGATCATGTGGAGATATCGCAGCCCTCTCA
GCAAGTTTATCCAGGACACATCCTTCGTAAATGCTGTTGTTTATCACATCCCCAGG------------------------
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-----------------------------------------------------------AACATCAATGGGGTAGCTCAT
GATTGTGCTCATCAGGTTCTCAACTCAAGAGTAGAATATTTCTTCAGTTGTACTCATTCCTCTCAAG-CAATGGTTCTTA
CCCTCTTTTACTTTCTCTTCAAAATCTTCAGGTGGAAGGGAATGTAATTCACGCTTTACTTTGCTTCTGAGATGAATGAA
AATTTGGTGCTTACTTGTGTTCAAAAAGAAAAGTAAGGACATCTGGGTGATGAGGACTTGGCGGCAAAGATAGAA--ATA
ATGGCTTGTTATCGACAGTACAAATTGAAAAACAAAACTAAAGTTTACAAGTGGTCGTTCACCATGACCCCTGTTGATAC
CGGCAATAATAAACCGAAGAAGAGGGGAGAGGGACCAAGAGTGGAACACTGAAGATGCAGCCCAAGTCCATCGACACTCT
ACAATCGTTTATAAGTGGAAAAAAAGTGTTTCTAAGGAATTACTAGTTCCTTCGAAGGTGTCATCCTTGATAAC------
-------------TACGAGAAAATGTTTATTTCGTTA----CATCGTTATCGTTACATGATGCCAATACATGATGAACTG
AAC-ACCCCCTTAAAATGGAAATAAAAACAAGAAATAAAGCGGCA-TCTTCAATCAATATCAGTTACAAACATACTAGCC
ACCAGTGAATACACCGATAAAAGAAATATATGCGTGTAAATATATCACGGGTCAAGTTAATTAAGCACGATTATATGTAT
GTACGAACGAATGCAAT----CAAGCAAGCAATCAAAGTAGCGAGTTAACCATGCACTTTGCAGCATCCAAGGTTTTTTT
TAGATTGCTCACCATCCATGCTGAATGGTCCACCCGATGGTTGAATCGATGATTATTTGTTGACGGCGTAGCACTTGCTC
CTGATCTCGCCCTGTTCTCCGGTGAGCACGCCGACGTTGCCCATCTTGACCATGGACTCGGCAAAGTCGCGGAAGAACTC
GGCGGCGAAGAGGCCGGTGGCCTGGCGCTCGACGTATGCCCTGGTGGTCGGGTGTTCTAGGAGCGCGGAGTCGGAGTGTA
GGATTCCTCTGCGCTTTGCCACGAGGCGGTAGTAGCCGGCGTCGAAGGTGAGGAAGCTGCCGGGGTCCATCTCCGCGAGC
GTGGTGTTGTCGGCGAGGCTCCGGCACTGGGACCTCAG
>chr6A_761
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----------------------------------------GGACCCCAACTCATCTCCATCTTCTGCCCAACAAGTTGCA
GCACCATCAAGCTCTCAAACCCAATGTGCAGAACAAATTTTGCAGGGATCCACAATCAAATCTGATTTACTCATTGCAGG
AACTAAAGTCTATTCTGATGCTGATTGGCGCAAGAAAAATATCCCTGGAAGGGGATTGGAGGGTGCCACTGGGATTGGTG
TTTTTGTCCATATTACTGATCAAGGAATTGATAGGAAAATCATGATACAGGCGTCTGCGGATGATGCTCTTTCTCCTCTA
TGTGCAGAAGCTTTGGCGATTAGGCTAGCAGCTGCAGTGACGGCCTCTCTTCACCTTAATCAGGT---TTTCCTCACCGA
CAATCTTTCCTTGGCAAAGATGGCGGCGTCCAGAAATATAAATGATGTCTTGATCACGTGGAGATGTCGCAGCCGTCTCA
GCAGGTTTATCCAGGACACATCCTCCCTAAATGTTGCTGTTTATCACATCCCCAGG------------------------
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-----------------------------------------------------------AACATCAATGGGGTAGCTCAT
GATTGTGCTTATCAGGTTCTCAACTCAAGAGTAGAATCTGTCTTCAGTTGTACTCATTCCTCTCAAGGCAATGGTTCTTG
CCCTCTTTTACTTCCTCTTCAAAATCTTCAGGTGGAAGGCTATGTAATTCACGCTGTACTTTGCTTCTGAGATGAATGGA
AATTTGGCGCTT--------------------------------------------------------------------
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>chr4B_761
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----------------------------------------GGACCCCAACTCATGTCCATCCTCTGCCCAACAAGTTGCA
GCACCATCAAGCTCTCAAATCCAAGGTGCGGAACAAAATTTGCAGGGATCCACAATCAAATCTGATTTACTCATTGCATG
AACTAAAGTCTATTCTGATGCTGCTTGGCAAAAGAAAAATATCCCGGGCAGGGGATCGGAGGGTGCCACTGGGATTGGTG
GTTTTGTCCATATTACCGATCAAGGAATTGATAGGAAAATCATGGTACAGGCGTCTGCGGATGATGCTCATTCTCCTCTA
TGTGCAGAAGCTTTGGCGATTAGGCTAGCAGCTGCGGTGGTGGCCTCTCTTCACCTTAATCAAGTTTCTTTCCTCACCGA
CAATCTTTCCTTGGCAAAGATGGTGGCATCCAGAATTATAAACGATGTCTTGATCACGTGGAGATGTCGCAGCCCTCTCA
GTAGGTTTATCCAGGACACATCCTCCCTAAATGCTGTTGTTTATCACATCCCCAGG------------------------
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-----------------------------------------------------------AACATCAATGGGGTAGCTCAT
GATTGTGCTCATCAGGTTCTCAACTCAAGAGTAGAATATGTCTTCAGTTGTACTCATTCTTCTAAAGGCAATGGCTCTTG
CTCTCTTTTACTTTCTCTTCAAAATCTTCAGGTGGAAGGGTATGTAATTCACGTTGTACTTTGCTTCTGAGATGAATGGA
AATTTGGTGCTT--------------------------------------------------------------------
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>chr4D_761
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----------------------------------------GGACCCCAACTCATATCCATCCCCTGCCCAACAAGTTGCA
GCACCATCAAGCTCTCAAATCCAAGGTGCAGAATAAATTTTGGAGGGATCCACAATCAAATCTGATTTACTTATTGCAGG
AACTAAAGTCTATTCTGATGCTACTTGGCACAAGAAAAATTCGCCTCTATT----------------ACTGGGATTGGTG
TTTTTGTCCGTATTACTGATCAAGGAATTGATAGGAAAATCATGGTACAGGCGTGTGCAGATGATGCTCATTCTCCTGTA
TGTGCAGAAGCTTTGGCATTTAGGCTAGCAACTGCGGTGGTGGCCTCTCTTCACCTTAACCAGGTTTCTTTCCTGACTAA
CAATCTTTCCTTCGCATAGATGGCGGCGGCTAGAAATATAAATGATGTCTTGATCACGTGGAGATGTCGCAACCCTCTCT
GTAGATTTATCCAGGACACATCTTCTCTAAATGTTGTTGTTTATCACATCCCCAGAAACCCCGATGATCAGGCGCACACC
GACCAGCACGAGGCGAGGTTTCAGAACCATGTTGCTTCTGATCGCCTGGCACATTTGGAAGGAGAGGAACGCCTGCGTTT
TCAGAGCCAAAATGTCACGGCCAGACGACGTCCTCCAGGCTATCAAGCTGGATCTTGCACAATGGAGACTCGACGGAGCG
ACATGCTTAGAGCCCCCGTTCGAGGACGCCGCTATGAGATAGCACGCCAAAGGCCTCCCAGTTTCGCTTCTCTTCTGTTT
CTTTTGCTTTGTGCTCTCCGTTTGCACACCTCTCTTGTGCTCATGATCACTTGATCCCCGCTGTTTCGCGTATGCTTTCT
CCTAAATCAATGAAGCCGGCCAAAACCGGGTCTTTCCAAAAAAAAAAAACATCCCCAGAAACATCAATGGGG--------
--TTGTGCTTATCAGG-TCTCAACTAAAGAATAGAATCTGTCTTCGCTTGTACTCATTCCTCTCAAGGCAACGGTTCGTG
CCCTCTTTTACTTTCTCTTCAAAATCTTCAGGTGAGAGGGTATGCAGTTCACGCTGTACTTTGCTCCTTAGATGAATGGG
AATTTGGCGCTT--------------------------------------------------------------------
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>chr3B_856
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-------------------------------------------------------TCAAATCAGATTTTCTTATTACAGG
AACAAAAATATACTTTGATGCTTCTTGGCGAAAGAAGAACATCCTAGGTCGAGGACAAGGACTGGGAACCGGAATTGGAG
TGTTTATTCAGATTCCAGGAGACGAGACTGAAAGGAAAATCATGATCCAAGCTTCTGCAGGTGATGCTCACTCCCCTCTA
TGCGCTGAAGCATTGGCGCTTCAACTTGCAGCAAGAGTCGCCACACAAATGCAATTTCAGCACACTACTTTCTTCATGTA
TAATCTCTCGTTGGCCAAGATGGTTGCTTCAAGGAACATAAATGATGACTTGATCAACTGGAGGTGTCGCGCCCCAATTA
GCAGTTTTCTTCAGGACACTTCTTCTATCCAGACTACAGTTTACCATATTAACAGG------------------------
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-----------------------------------------------------------AACATCAATGGAATAGCTCAT
GATTGTGCTCATCAGGTTCTCAACTCAAGAGTAGAATCTGTCTTTAGTTGTACTCATTCCTCTCAAAGCAGTTCTTTTTG
CCCAACTTTGCTTTATCTTCATAACTTCCAAGTTCAGGGATATGTAATACATGTTGTACTATGCTTTTGAGATGAATGAT
ATATTGGCGCTT--------------------------------------------------------------------
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>chr2B_1466
AAGTAA--------------------------------------------------------------------------
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-----------------------------------AGGATATCTGGGTTATGAGGACTTGGCGGCAAAGATTGAAACATA
ACGGCTTGTTTTAGAAAGCACAAA-TGAAGAAAAAAACTAAAGTTTACAAATGGTCGTTCATAACCCG---TGTTGATAC
CGGCGATAATATACCAACGAAGAGGGGAGTGGGACCAAGAGTGGAACACTCAAGATGCAGCCCAAGTCCAGCGATTGTTG
GGAGAA------------AAAAAGAATATTTCTAAGGAATTACAAGTTCCTGCGAAGGATTCATCTATCTATGATAAATA
AGAGAAGATCTCATACGAGAAAATGTTTATTAATTTCGTTGCATCGTTACCGTTACATGATGCCAATACATGATGAACTG
AAAAACCCCCTTAAAATGGAAATAAAAACAAGAAATTAAGCGGCACTCTACAATCAATATCAGTTACAAACA---TAGCC
ACCAGTGAATACACCGATAAAAGAAATAAGTGCGCGTAAATATATGACAGGTCAAGTTAATTAACCACGATTATA----T
GTATGAACCAATGCAATCAAGCAAGCAAGCAATCATAGTACCGAGTTAACCATGCATGCACTTTGCACTAC---------
--------------------------------CCCGATGGTTGAATCGATGATTATTTGTTGACGGCGTAGCACTTGTTC
CTGATCTCGCCCTGTTCTCCGGTGAGCACGCCGATGTTGCCCATCTTGACCATGGACTCGGCGAAGTCGCGGAAGAACTC
GGCGGCGAAGAGGCCGGTGGCCTGGCGCCCGACGTATGCCCTGGTGGTCGGGTGTTCCAGGAGCGCGGAGTCGGAGTGTA
GGATTCCTCTGCGCTTTGCCACGAGGCGGTAGTAGCCGGCGTCGAAGGTGAGGAAGCTGCCGGGGTCCATCTCCGCGAGC
GTGGTGTTGTCGGCGAGGCTCCGGCACTGGGACCTCAG
>SNPs
SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------------
----------------------------------------------------------S---------------------
----------------------------------------------------------S---------------------
-----------S-S-------------------S----------------------------------------------
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--------------------------------------------------------S--------S--------------
---S--------------------S-S-----------------------------------------------------
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---------------------------------------S---------------------------------------S
----------------------------------------S--------------S------------------------
------------SSSSSSSSSSSSSSSSSSSSSSS----S--------S----------------------S--------
-S--------S-S--S--S-----S----S--S-----------------S----------SS-SSSSSSS---------
----S------S---S-S-----------S--------------------S-------------------S---SSS-SS
SS-SSSSSSSSSSSSSSS-----S-S-S---------------S-------S------SS-----SS-SSSSSS------
-------------------------------SSS--S------------S------------------------------
--S---------------------------------S------------S----------------------SSS-----
----------------------------SS----S----------S--S---------------S----------SSSS-
---S----S--------------------------S----S---------------SSSSSSSSSSS-S-SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------------------S--
----------------------------------S---------------------------S-----------------
----------------------------S----------------------------S----------------------
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>forward_321
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-------------------------------------------------------------AGAGTGCGGACAGGGAATT
G-------------------------------------------------------------------------------
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>reverse_2558
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-----------------------------------------------------------------------------CTC
CTGATCTCGCCCTGTTC---------------------------------------------------------------
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