>input_sequence_81429
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-----------ATGGATGAGCTGGGTGCAGGCGCCGGGAAGAAGGGCAAGGCATGGCCCTGGTGGCTTGGAGCGAGTGCA
GCGCAGATCACCGGCGCGCTGGTTTGGTTCCGGCGAGGCAAGGGCGGCAGCGACATGACGATGCCGTTCAGAGCGTTCGC
CGTCGCCTCGCTCTTCGTCGGCGCCGGCGCCACGACCGTCACCGCCGGAGTGTCCGCGGCGGGCGTCGGATCGGTAAGTC
GCCGGAGCCAAAACACCTCGCATCCGTGCGACGGATTCTCGATCTGGACGCGGCAAAT--TTTACACCGCGCGTCTCTGT
T-TCTGCATCTGCAGGTGGAGGAGATGAAGGGCTTGGGCGCGAGGATCCGGAAGTGGAGCAGAGTTCCTCCTCGCCGGGT
GGAGGGAGGCGAGTAG----------------------------------------------------------------
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>chr2B_1_TraesCS2B01G434500
GTCATGTCATTTTGCTGTCTGGTACCTGCAAGTATGTTCATCAGAGA-------TTTTTCTTGTATGCAAGCCCATATAT
AGGCTTGCTTACAGAATAATTGGTCAAAATCCCTGGTTTCTGTGTAAGCAAGCCTCTGGGAGTTGCCACCGGAAAAATAT
CATATCAATCAACCTCCCGGGAATGAAATAATTTTGTAACTTCGGT----TAAATATCGGTTTTAGCAGGTACTTCCACT
CTAGTTTGACCACTGCACCAGCATAATTCATTTATCGTCGCCATTCACCCCAGTGCTCCCACT-----------------
------AAAATTGAAATGATAGCATGCCACAA-------GCCACAACCAATCCCCATCGCAGGCACACATGGACGAATTG
TACAGAGAAGGACGGCAGCAAGCAACTGACCTGTGCCATCGCAGCGGAGCTCCTCGCAGGCGGAGCAGCCAGCGACGACG
GCATCCACAGCCGACCCCCCTGCGCCGCCGGTTTTCACCACGTCCCACGCCGCCCTGACCGCCTCCCGGAACGGCCAGGT
GCTCACCACCACCGGAAACACGCCGCCCCCTTCCTCCGCGCCTCCGCCATCCACGGCCTGGGTTAAAATTCCCCAATCGC
AGCGACTCCATCAACGATAACACGAACAAAATCGACCTGTGCAAAAATTGGATCGGATCGGATCAACGACTCACCAAGCA
CCAATTGAGCCGCAGCAGCAGGAGCCCCAGGAGAAGCCCCGGGTTGCTCCGAGCCATGGAAGCTGGGGAGGCGGTTGAGG
CGGATTGGGGAA-------TGGCAGTACTACTGGTGATCACTGAGAGGTGGGAGAGAAG--AACCTACCCCGTTATGCTG
GA-GGTGAACTGGCAACGGGTCCCACATGTCAGTGGATGGACATGACACGGCCTACCAAGGGCCCCACATGTCGGTGAGC
ATTGTGCGTTTCAGTGTGTGCATACTTTGCAACTCCCACAGAGCTGTGGTGTCCCCCACATAACCTAGCGGCGGCGGCGG
CGGCGGCGGCGATGGATGAGCTGGGTGCAGGCGCCGGGAAGAAGGGCAAGGCATGGCCCTGGTGGCTTGGAGCGAGTGCA
GCGCAGATCACCGGCGCGCTGGTTTGGTTCCGGCGAGGCAAGGGCGGCAGCGACATGACGATGCCGTTCAGAGCGTTCGC
CGTCGCCTCGCTCTTCGTCGGCGCCGGCGCCACGACCGTCACCGCCGGAGTGTCCGCGGCGGGCGTCGGATCGGTAAGTC
GCCGGAGCCAAAACACCTCGCATCCGTGCGACGGATTCTCGATCTGGACGCGGCAAAT--TTTACACCGCGCGTCTCTGT
T-TCTGCATCTGCAGGTGGAGGAGATGAAGGGCTTGGGCGCGAGGATCCGGAAGTGGAGCAGAGTTCCTCCTCGCCGGGT
GGAGGGAGGCGAGTAGTAGTGCTGCCATGGATTTGATCTAGGAAACTACTGTACTTACTAGAGTGGCAAGAGTTTCCATG
TGATCTG---GATTGCTTCACATGATCACACATTTGGGAGATGCAAAGCAATAATCACATCTGTACCGTACTATTGTTCT
------------GTAACGTTGTAGCGAAAGCTTTGTTTGCTCGAATTTTGATCCTGCCCTGTGGACGATAGCCATTGTAC
TCGTCTCCCAGATGGAAACTTGTGAAACTGCTTGTTTAAATCTC-TTGGTAATGTTATCTAACGAATGTCAGCCGGAAAG
GGGTTGACAAGCTAACGTTGTTTCCTCACAGTTGCTTCGCGAGATCAGACGGTGACAATTCTAAACGAAAAATACCTTCT
TGTCATTTCCTCCTATTGAATGTGGTTTTGAAGAAATTAGCATTCCCTCACGGTTAAAATTGTCAGCGAAATCGTTTGAA
ATATCACCCCCACCCCCTCCCCCTACTAGAGAATGTTCGTCGG-------------------------------------
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-----------------------------------------------CTAAGAGGGTCCTAAATTTTAGTGAAATCCTTT
AACAGAGGAAAT----GGATGTTTAAGAAAAACACAGTACAATTGAAGTCGCTCAT---ATACACGAGCATACATTCTCC
TGTATGTGTGATCATATGAAGCAATCTACTAGATCTGGCTGACATTCCATGTGTGCTTCGCGCATGCTCGCTACCGGGAT
GTCGCCGTCGATGCCGGTGTCGCGACCTGCCATAGTGCCTGATAATGTTTCAGTGCCTGATAAAGTGTCTGCTCCCTCTC
CATTGCGTATTTCCCTCGACATAGCGAGAAGAAATTCAGATGTCGATCCTTCTGCAGCAAAGTCAGTTTCTCTCATCATT
CCGACTCTATCATTTTATGATGATGAAGTGATTTCCGTTGAAGATGAGCTCAAATATCCATATCCTTGCGAGCAACTGCC
TTTATTCTCCACAGGCCTTGGCGTCAAAGGGCCTCTTTTCAATCGGAACACTCATCTTGTTTTCTTTTAAGAGAGTCCAT
ACA
>chr2D_3
CATA--TCATTTTGTTGTCTGGTACCTGCAAGTATGTTCATCAGAGA-------TCTTTCCTGTATGTAAACCCATTTAT
AGGCTTGCTTACAGAATAATTGGTCAGAATCCCTGGTTTCTATGTAAGCGAGCTTCTGGGAGTTGCAACCGGAAAAATAT
CATATCAATCAACCACCAGGGAACAAAATGATTTTCTAACTTTGGTATTAAATAACGG---TTTAGCAGGTATTTCCA-T
CTAATTTTACCACTGTACAAGCATAGTTCCTTCATCATCGCCATTCACCCCAGTGCTACCACTTCAGCTCAGCGAGTGCT
GAGGTGAAAATTGAAATGATACCATGCCACAA-------GCCACAACCAATCCCCATCGCAGGCACACATGGACGAATTG
CACAGAGAAGGACGGCAGCAAGCAGCTGACCTGTGCCATCGCAGCGGAGCTCCTCGCAGGCGGAGCAGCCGGCGACGACG
GCATCCACAGCCGACCCCCCTGCGCCACCGGTTTTCACCACGTCCCACGCCGCCCTGACCGCCTCCCGGAACGGCCAGGT
GCTCACCACCACCGGAAACACGCCGCCCCCTTCCTCCGCGCCTCCGCCATCCACGCCCTGGTTTAATATCCCCCAATCGC
ACCGATTCCATCAACGATAACACGAACAAAGTCGACCTGTACGAAAATCAGATCGGATCGGATCAACAACTCACCAAGCA
CCAATTGAGCCGCAGCAGAAGCAGCCCTAGGAGAAGCCCCGGGTTGCTCCGAGCCATGGAAGCTGGG----CGGTTGAGG
TGGATTGGAGAATGGGGAATGGCAGTAGTACTGGTGATCACTGAGAGGTGGGAGAGAAGGGAGCCTACCCCGTTATGTTG
GGGGGTGAACTGGCAACGGGTCCCACATGTCAGCGGATGGACATGACACGGCCTACCAAGGGCCCCACATGTCGGTGAGC
ATTGTGTGTTTCAGTGTGTGCATAGTTTGCAACTCCCACAGAGCTGTGGTGTCCCCCGAATACCCTAGCGGCGGCGGCGG
CGG------CGATGGATGAGCTGGGTGGAGGCGGCGGGAAGAAGGGCAAGGCATGGCCCTGGTGGCTTGGAGCGAGTGCG
GCCCAGATCACCGGCGCGCTGGTTTGGTTCCGGCGAGGCAAGGGCGGCAGCGACATGACGATGCCATTCAGGGCGTTCGC
CGTCGCCTCTCTCTTCGTCGGCGCCGGCGCCACGACCGTCACCGCCGGAGTGTCCGCGGCGGGCGTCGGATCGGTAAGTT
GCCGGAGTCTAAAGCCCTCGCATCCGTGTGACGGATTCTCGATCTGGATGCGGCAAAAAATTTACATCGCGCGTCTGTGT
TCTCTGTATCTGCAGGTGGAGGAGATGAAGGGCTTGGGCGCGAGGATCCGGAAGTGGAGCAGAGTTCCTCCTCGCCGGGT
GGAGGGAGGCGAGTAGTAGTGCTGCCATGGATTTGATCTAGGAAAGTA---------CTGGAGCGGCAAGAGTTTGCATG
TGGTCTG---GATTGCTTCACATGATCACACATTTGGGAGATGCAAAGCAATAATCACATCTGTACTGTAC------TCT
------------GTAACGTTGTAGCGAAAGCTT-GTTTACTCGAATTTTGATCCTGCCTTCTCGATTATAGCCATTGTAC
TCGTCTC--------AAACTTGTGAAACTGCTTGCTTAAAAGA-TTTGGTAATGTTATTTGACGAATGTCAGCCGGAA-G
GGGTTGACAAGCAAACGTTGTTTCCTCACAGTTGCTTCGCGAGATCAGACGGTGGCAGTTTTAAACCAAAAA----TTCT
TGTCATTTCCTCCTAGCGAGGGTGGTTTTGAAGAAATTAGTATTCCCTCACGGCTAATACTGTCAGCGAAATAGTTCGAA
ATATCACCCCCTCC------------------------------------------------------------------
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>chr2A_3
CATA--TCATTTTGCTGTCTGGTACCTGCAAGTATGTTCATCAGAGATTTTATTTTTTTCTTGTATGCAAACCCATTTAT
AGGCTTGCTTACAGAATAATTGGTCAGAATCCCTGGTTTCTATGTAAGCAAGCCTCTGGGAGTTGCAACCGGAAAAATAT
CATATCAATCAACCTCCCCGGAACGAAA------TGTAACTTCGGTATTATAAATATCGGTTTTAGCAGGTATGTC----
----------------------------CATTTCTCGTCGCCATCCACCCCAGTGCTCCCACTGAGAC------------
-----------TGAAATGATACCATGCCACAAGCCACAGGCCACAACCAATCCCCATCACAGGCACACATGGACGAATTG
TACAGAGAAGGACGGCAGCAAGCAACTGACCTGTGCCATCGCAGCGGAGCTCCTCGCAGGCGGAGCAGCCAGCGACGACA
GCATCCACAGCCGAGCCCCCTGCGCCACCGGTTTTCACCACGTCCCACGCCGCCCTGACCGCCTCCCGGAACGGCCAGGT
GCTCACCACCACCGGAAACACGAAGCCCCCTTCCTCCACGCCTCCGCCATCCACGGCCTGGTTCAAAATCCCCCCATCGC
AGCGACTCCATCAACGATAACACGAACAAAATCGACCTGCACAAAAATCGGATCGGATCGGATCAACGACTCACCACGCA
CCAGGTGAGCCGCAGCAGCAGGAGCCCCAGGAGAAGCCCCGGGTTGCTCCGAGCCATGGAAGCTGGG----CGGTTGAGG
TGTG-----GATTGGGGAATGGCAC---TACTGGTGATCACTGAGAGGTGGGGGAGAAG--AGCCTACCCCGTTATGTTG
GG-GGTGAACTGGCAACGGGTCCCACACGTCAGTGGATGGACATGACACGGCCTGCCAAGGACCCCACGTGTCGGTGAGC
CTTGTGTGTTTCAGTGTGTGCATAGTTTGCAACTCCCACCGAGCTGTGGTGTCCCCCAAATAACCTAGCGGCGGCGGCGG
CGGCGGCGGTGATGGATGAGCTGGGTGGAGGCGGCGGGAAGAAGGGCAAGGCATGGCCCTGGTGGCTTGGAGCGAGTGCG
GCCCAGATCACCGGCGCGCTGGTTTGGTTCCGGCGAGGCAAGGGCGGCAGCGACATGACGATGCCGTTCAGGGCGTTCGC
CGTCGCCTCGCTCTTCGTCGGCGCCGGCGCCACGACCGTCACCGCCGGAGTGTCCGCGGCGGGCGTCGGATCGGTAAGTC
GCCGGAGCCAAAACCCCCCGCATCCGTGTGACGGATTCTCGATCTGGATGCGGCAAAT--TTTACACCGTGCGTCTGTGT
TCTCTGTATCTGCAGGTGGAGGAGATGAAGGGCTTGGGCGCGAGGATCCGGAAGTGGAGCAGAGTTCCTCCTCGCCGGGT
GGAGGGAGGCGAGTAGCAGTACTGCCATGGATTTGATCTACTG--------------CTAGAGCGGCAAGAGTTTCCATG
TGAGGATCAAGATTGCTTCACATGATCACACATTTGGGAGATGCAAATCAATAATCACATCTGTACTGTAC------TAC
TACTCTGTAGGAGTAACTTTGTAGCGAAAGCTT-GTTTACTCGAATTTTGATCCTGCCTTCTGGAATATAGCCATTGTAC
TCGTCTCCCAGATTGAAAC---TGAAACTGCTTGTTTAAATTTTTTTGGTGATGTTATCTGACGAATGTCAGCCGGAA-A
GGGGT------------TTGTTTCCTCACAGTTGCTTCGCGAGATCAGATGGTGGCAATTTTAAACGAAAAATACCTTCT
TGTCATTTCCTCCTAGCAAATGTGGTTTTGAAGAAATTAGCATTCCCTCACGGTTAAAANNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAGAGGGTCCTAAATTTTAGTGAAATCCTTT
TTTTAATAGAGGTAAAGGATGTTTAAGAAAAACACAGTATAATTGAAGTTGCTCATAGTATACACGAGCATACACTCGCC
CGTATG--------------------------------------------------------------------------
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>SNPs
SSS-SS----------------------------------------------------------------S-----S---
--------------------------S--------------S------------------------S-------------
-----------------------S-----S------------------------------------------S-----S-
---S---S-------S--S------S------------------------------------------------------
---------------------S----------------------------------------------------------
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--------------------------S-----------------------------------------------------
-------------------------------------------------------------S-------S----------
----------------------------------------S-------S-------------------------------
-------------------------------------------------------------------SSSS---------
S-------S------------------S----------------------------------S--------------S--
-S------------------------------------------------------------------------------
------S-----------------S---------------------------------S---------------------
---------------------------S-----S---------------------------------------------S
--S--------------------------------------------------------------------S--------
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--------------S-------------S-------------------S---------------------------S---
------S-------------------------------------------------------------------------
---------------------------------------------S--SSSSSSSSS------S----------------
------------------------------------------------------------------S----SSSSSS---
---------------------------------S----S-------------------S-S----SS-------------
-------------S---------------------------S-S----------------S-----------------S-
------------S-----------------------------------------S-----S-------------------
---------------SS------------------------------------------S------------S---S---
-----------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------
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SSSSS-SSS-SS---------------------------S---------S------------------------S--S--
S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS
>forward_967
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-------------------------------------------------------------------CATGTCGGTGAGC
ATTGTGC-------------------------------------------------------------------------
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>reverse_2384
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---------------------------------------------------------------AGTGTCTGCTCCCTCTC
CAT-----------------------------------------------------------------------------
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