>input_sequence_81427
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--------------------------------------------------ATGGCGATTAGTCAGAAAAATGTAAGCTTT
GTATGCTTAGCAGCCCTCATGTTGGTGATGGCGACCATTATGTTGTCATGTGATGCTGATCCAAAAGGTTAACATCATTT
CTTTCC-TATTGTG----TATACCTAGAATTTTCCTTGCAGCTATGCGTGTATAGCTGATAGCACGCACTGACAGTGACA
CATGAATGAACCCATATGATATTTAACATGGTAATTTATTTAATATTTTGTTGTAGAATCATGCTACGGGCTTGAAGATG
GATGCGCCGAATTGAAATGCAAGGAATATTGTGTGGACTATGGTTACACCAAGGGATCTTATTGCCAGAATGACGCTTTA
TGTTGTTGTTTGACTGCTGCCAAGCCCAAGGTGGAATTCACCCGTCGTCGTGATTGA-----------------------
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>chr2A_1_TraesCS2A01G588600
AATACTCCATCTGTCCCTAGATATAAGTCTTTTGAGATTCAACTATAAACTACATACGGCATATTTTAGAGTATAAATTC
ACTCATTTTGCTCCGTACGTAGTTCATAGTGAAATATCTAAAAGACTTATATTTAGGAATGTAGGGAGTTCTTATTAACA
CGCAAGTACGCACAATCTAATTCAGATCGATCAGTGCATAGTGCTGGAGAGCATCGACAACGCTGGGCAGAGATGTGCAT
GACAGCGATGGGCTGACGGCGACTGTACATGTCCAGCAATTAACTGGACAGAGAGGTGTCCAGCCAAGATGGAGGCGGGG
TAGCTGGGGACGGTGCCGTGAACGGTAGCTAGGGACGATCGCGTCGCGAGGAACTACGAAAATGGAGCGGGGGTGGTGGG
CGCTCTGGTCGATCCTCATGTTTGGAGTCTTCGTGATGAACCGTACTACACCCTCCGTTCCTCCATAATATAAGTGTGTG
TTTTACACTAGTGTAAAAAACCACTCTTACATGATGAGACGAAGGGAGTATAAGTATTTCGAAAGATTTCACTATGGACT
ACATTCAGATGTATATAGACGTAGTTTAGAGTGAAGATTCACTCATTTTGCTCCGTATATCGTCCATATTGAAATCTCTA
AAGAAACTTATATTTAGGAACAAAGGGAGTACTTTAACTCCAACAATAACTCTTTTTTATAACAGATCTTCATATCCAGA
TAGATATAACGGATGCGCCAAAAAAGGGAAGAAATCAATTCACAATAAAAGCATTGATGTGATAAGTATGCACT---TCT
ATTTAAAGATATGCATTAATCTATCCATTAATTTCACCCTAAAAATAGGATGTTATTTAATTATCAGGATAAAACTCAGG
ATCAATTAGCATGCTTGCCCCTATATAAATGCTAGCACAACAAGCTGCTCTTCAACACATTTGGCAGATCAAATCAAACA
GTAAAGAGAAGAGTTCG-----GTACTTAGTTT--GCGTTGTATCTTGTGATGGCGATTAGTCAGAAAAATGTAAGCTTT
GTATGCTTAGCAGCCCTCATGTTGGTGATGGCGACCATTATGTTGTCATGTGATGCTGATCCAAAAGGTTAACATCATTT
CTTTCC-TATTGTG----TATACCTAGAATTTTCCTTGCAGCTATGCGTGTATAGCTGATAGCACGCACTGACAGTGACA
CATGAATGAACCCATATGATATTTAACATGGTAATTTATTTAATATTTTGTTGTAGAATCATGCTACGGGCTTGAAGATG
GATGCGCCGAATTGAAATGCAAGGAATATTGTGTGGACTATGGTTACACCAAGGGATCTTATTGCCAGAATGACGCTTTA
TGTTGTTGTTTGACTGCTGCCAAGCCCAAGGTGGAATTCACCCGTCGTCGTGATTGAGTGCCTACAAACGTTGTTCATAT
CTATCAGATATCAAAAGTGACCATGTGTTGCAATGGGTATAAAATAAATATATTTTAAAAAAGAAACATTTAGCC----C
CTCCCGTAATTGTTGA------ATAAAGTGAGTCATCAACGTGCCACATGGGTGGGGATTTGAGACCACACCCCCTCCTT
TTATCTCCTGCCATGAATGCTCTCGTATTTTCTCAAGCGATGGTTCCGCCACATGGGTCGTGACCATGGACCATTGCTGT
CATGGATGATGCGTTACCTCACTTCCGAATCAACTCATTCCGTTACAAGTAGTTGTAGAAAATAAATGAAATATGCATAA
GCTGCACATAATTCTAAGAAGCTCTCTCACGTTGGAGGCAAAATGTGTTTTTTTAGAACTGCAAAATGTGTTCTCTAACT
CAACAAGCATGGCAATTGGAAATGGGCTTTGCCTATCTACTAATTTGGTTGAAGAAACGGCCATTAGGCCTCTTGTTTCC
AAATCAAAGCCCAAGGGAAAAAAACTCGCCGTCTCTGTCTCTCCCGTAGCCGCCGGCCACCCACATCGCCTTCCTCCCCC
AGCTCGCCACGGGCCGGCCCTCTCCCCCTCTGACCCCCACCTCAGTTAGTGCCATCCGTCCACACCAAGCACCCAACCCA
GCCCTCTCCCAGCAACCCCCCTCCGTCTATTTGCTAACTAAGAATATTTTTTGCCATTTGATAGAAAGGAGATATTTCCT
AATAAGTTCCAGCTCAGATTGAAATATGCAAGGTATTTCAATTATGTTACACTAATACTGAATTGTGATGTTATACTTTT
CAGGTTTGCTTTGAAGATCTGTACTTACACCATTAACAAATGAAAACAAAGTACTCGACAACTTGGCATATTCATCTTCT
TTCCTATATTTGCTAACTAAGCATCGGTAAACATAGTACATGACAACATGACAATAGTAATGTTTATATATTTACCAATT
GGGTCTCTGGGGCCAAAACTTATTCAT
>chr2B_781
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------------------------------------------------------------GATAAGTATGTAGTATATCT
ATCCAAGGATATGCATAAATCAATTCATTAATTCCATCTTAATATTAGGATCGTATTTAATTACCACCATAAAACTTAGG
ATCGG-TAGCGTGCTCGCCCCTATATAAATGCTAGCAAAATGAGTTGCTCGTCAACACATTTGGCAGATCAGGTCACACA
GCAAAAAGAAGAGAGGATATCAATACATAGCTA--GCATTGTATCTTGTCATGGCGTTTATTAAGAGAAATGCAAGTCTT
GTATGGTTGGCGGCCCTCGTGTTGGTGATGGCAACTGTGATGTCGTCTTGTGATGCTGATCCAAAAGGTTAACATCCTTT
TCCCCC-TATTGTGTATATAC-CTAAAAAAAATCTCTACATCTATGTTTGCA--GTTGA------------------ACC
GACGAATGAAGATATATTGTAATTAATATGCTAATTAATTTAATCTTTTTGTGTAGAATACTGCAGTGGGCTTGAAGATG
GTTGCACCAAATCTAAGTGCAGGGATTGGTGTGCTGGCGTAGGTTACACCAAGGGATCTCATTGCCAGGAAGCCGGCGTA
TGTTGTTGTTTGACTGCTGCTAAACCCAAGGTGGACGTCGTCCGTCGTCGTGATTGAGCGCATGCGAATGTTGTT-----
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>chr2D_802
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----AAGGATGTGCAATAATTGTTCCATTAATT---CCCTAATATTAGGATGGTATTTAATTACCACCATAAAACTCAGG
ATGACTTAGCGTGCTCG-CCCTATATAAACGCCTGCAAATCGGTTTACTCATCAACACATTTGGTAGATCAGATCAAACG
GTAAAAAGAAGAGGG--TACCAGTACATAGCTA--GCATTGTATTTTGTGATGGCGATTAGTAAGAGCAATGCAAGCTTT
GTATGCTGGGCGGCCCTGATGTTGGTGATGGCCACTCTGATGTTGTCATGTGATGCTGATCCAAAAGGTTAACATCCTTT
TTTCCC-TATTGTGTACATATACTTAAATTTTTCCTTGCACCTATGTTTGTA--GCTAATAGCAACCATCAACAATGATT
GATGAAGGAGCCCATATTATATTTAAGATTGTAATTCATTTAATCTTTTTGTGTAGAATCATGCGATTTGATTGAAGATG
GATGCAACGAAGCCCAGTGTAGGGACTATTGTAGGATCATTGGTCACACCAAGGGATCTT---GCCGGGAAGCCGAGTAT
TGTTGTTGTTTGATTGCCGCAAAGCCCAAGGTG---------CATCATCGTGATTGAGCTTCTATGAACATTATTTTATT
AGAT-ATATAGCAAAAGAGCCC-----TTGTAACGGGTACAAAATAAATAAATTTTATG-CAGAAACATTTAATTAGCGC
CTCCCATCACAGTTGC------ATAAGCTGAGTCATCAACATGCCACTTTGACCCGGATTTGGG---ACAGCCCCTCCTT
TTATCTTCTGCCATGATTGCTCCCC-ATTTTCATAAACCATGGTTCCGCCTCTTGGGTCATGACGGTGGAACCTTGGCAC
CATGGATCATGTGTTGTCTCGCCTCTGACTCAGCTCATTATATGACAAGAAGTGGTAGAAAAAAAATTAAATATGCTTAA
GTTGCACCTAATTCTTAAG-------------------------------------------------------------
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>chrUn_802
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----AAGGATGTGCAATAATTGTTCCATTAATT---CCCTAATATTAGGGTGGTATTTAATTACCATCATAAAACTCGGT
ATGACTTAGCGTGCCCG-CCCTATATAAACGCTAGCAAATCGATTTACTCGTCAACACATTTGGTAGATCAGATCAAACG
GTAAAAAGAAGAGGG--TACCAGTACATAGCTATAGCATTGTATTTTGTGATGGCGATTAGTAAGAGCAATGCAAGCTTT
GCATGCTGTGCGGCCCTCATGTTGGTGATGGCCACTCTGATGTTGTCATGTGATGCTGATCCAAAAGGTTAACATCCATT
TTTTCCCTATTGTG--CATATACTTAAATTTTTCCTTGCATCTATGTTTGTA--GCTAATAGCACCCATCAACAATGATT
GATGAAGGAGCCCATATTATATTTACAATTGTAATTCATTTAATCTTTTTGTGTAGAATCATGCGATTTGATTGAAGATG
GATGCAACGAAGCCCAGTGTAGGGACTATTGTAGGATCATTGGTCACACCAAGGGATCTT---GCCGGGAAGCCGAGTAT
TGTTGTTGTTTGATTGCCGCAAAGCCCAAGGTGGACGTTGTGCATCATCGTGATTGAGCTTCTACGAACATTATTTTATT
AGAT-ATATAGCAAAAGAGCCC-----TTGTAACCGGTACAAAATAAATAAATTTTATG-AAGAAACATTTAGCA----C
CTCGAGGACAGCCCCTCCTTTTATAACCTGAGTCATCAACATGCCACTTTTGCCCGGATTTGGG---ACAGCCCCTCCTT
TTATCTTCTTCCATGATTGCTCCCC-ATTTTCTCAAACCATGGTTCTGCCTCTTGGGTCATGACTGTGGAACCTTGGCAA
CATGGATCATGTGTT-----------------------------------------------------------------
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>chr2A_821
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-----------------------TCCATTAATT---CCCTAATATTAGGGTGGTATTTAATTGCCACCA-AAAACTCAGG
ATGACTTAGCGTGCTCG-CCCTATATAAACGCTAGCAAATCGATGTACTCATCAACACATTTGGTAGATCAGATCAAACG
GTAAAAAGAAGAGAG--TGCCAGTACATAGC--TAGCATTGTATTTTGTGATGGCGATTAGGAAGAGCAATGCAAGCTTT
GTATGCTGGGCGGCCCTGATGTTGGTGATGGCCACTCTGATGTTGTCATGTGATGCTGATCCAAAAGGTTAACATCCTTC
TTTTTCCTATTGTGTGCATATACTT-AATTTTTCCTTGCATCTATGTTTGTA--GCTAATAGCACCTATCAACAATGATT
GATGAAGGAACCCATATTTTATTTATGATTGTAATTCATTTAATCTTTTTGTGTAGAATCATGCGGTTTGATTGAAGATG
GATGCAACGAAGCCCAGTGTAGGGACTATTGTAGGATCATTGGTCACACCAAGGGATCTT---GCCGGGAAGCCGAGTAT
TGTTGTTGTTTGATTGCCGCAAAGCCCAAGGTCGACGTTGTGCATCATCGTGATTGAGCTTCTATGAACATTATTTTATT
AGAT-ATATAGCAAAAGAGCCC-----TTGTAACGGGTACAAAATAAATAAATTTTATG-CAGAAACATTTAGCA----C
CTCCCATCACAGTTGC------ATAAGCTGAGTCATCAACATGCCACTTTGGCCCGGATTTGGG---ACAGCCCCTCCTT
TTATCTTCTGCCATGATTGCTCCCC-ATTTTCTCAAACCATGGTTCCGCCTCTTGGGTCATGACTGTGGAACCTTGGCAC
CATGGATCATGTGTTGCCTCGCCTCTGACTCAGCTCATTGTACGACAAGAAGTGGTAGAAAA------AAATATGCTTAA
GTTGCACCTAATTCTTAAGTAGCT--------------------------------------------------------
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>chr2D_821
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-----------------------TCCATTAATT---CCCTAATATTAGGGTGGTATTTAATTACCACCATAAAACTCAGG
ATGACTTAGCATGCTCG-CCCTATATAAACGCTAGCAAATCGATTTACTCATCAACACATTTGGTAGATCAGATCAAACG
GTGAAAAGAAGAGAG--TGCCAGTACATAGC--TAGCATTGTATTTTGTGATGGCGTTTAGTAAGAGCAATGCAAGCTTT
GCATGCTGGGCGGCCCTGATGTTGGTGATGGCCACTCTGATGTTGTCATGTGATGCTGATCCAAAAGGTTCACATCCTTT
GTTTCC-TATTGTGTACATATACTTAAATTATTCCTTGCACCTATGTTTGTA--GCTAGTAGCACCCATCAACAATGATT
GATGAAGGAGCCCATATTTTATTTACGGTCGTAATTCATTTAATCTTTTTGTGTAGAATCATGTGATTTGATTGAAGATG
GATGCAACGAAGCCCAGTGTAGGGACTATTGTAGGATCATTGGTCACACCAAGGGATCTT---GCCGGGAAGCCGAGTAT
TGTTGTTGTTTGATTGCCGCAAAGCCCAAGGTGGACGTTGGGCATCATCGTGATTGAGCTTCTATGAACATTACTTTATT
AGAT-ATATAGCAAAAGAGCCC-----TTGTAACGGGTACAAAATAAATAGATTTTATG-CAGAAACATTTAGCA----A
CTCGAGGACAGCCCCTCCTTTTATAAGCTGAGTCATCAACATGCCACTTTGGCCCGGATTTGGG---ACAGCCCCTCCTT
TTATCTTCTGCCATGATTGCTCCCC-ATTTTCTCAAACCATGGTTCCGCCTCTTGGATCATGACTGTGGAACCTTGGCAC
CATGGATCATGTGTTGCCTCGCCTCTGACTCAGCTCATTATATGACAAGAAATGGTAGAAAGAAAATTAAATATGCTTAA
GTTGCACCTAATTCTTAAGTAGCTATCACA--------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S-S-------
--SS--S--------------S-----------S--------S-S-------S----------S--SS------------
----S----------S---------------------S---S--S-----S--------------------S--------
-----S-------SSSS---------S---S-S----S------------------------S---S-----S-------
--------S--S--------------------S--SS-S-------------------------------------S---
S----------------------S--S-------------S-----SS----SS-----------S--SSS---S----S
S----------------S--------S---------S-------S----SS-------------S-S-------------
-----S------SS--S----S---S-------S--S-SS----------------------------S-S-S--SS---
--------------------S--------------SS--SS-----------------S------S---------SSSS-
SS--S-S---S------S-S--SSSSS---S--S-----S----------S------SSS--------------S-----
---------SS----S----------SS------------S------S-S--SSS-------S-SSS---S---------
------S---------S-----S-SS----------S-S-----------S-S------S----SS----S-S---SSSS
-------S---S---S----S-S--S--S---S------SSS-S-----S---S--------S----S--------S---
-S-----S-------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_358
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------------------TGAACGGTAGCTAGGGACGA------------------------------------------
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>reverse_2045
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--------------------------------------------GTTAGTGCCATCCGTCCACA----------------
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